Wall clock time and date at job start Mon Mar 30 2020 02:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 119.99905 * 2 1 4 4 C 1.38238 * 119.99832 * 180.24725 * 3 2 1 5 5 C 1.38241 * 120.00048 * 359.77243 * 4 3 2 6 6 C 1.38237 * 119.99896 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99766 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00163 * 179.78496 * 2 1 3 9 9 C 1.50699 * 119.99868 * 0.02562 * 8 2 1 10 10 O 1.42903 * 109.47120 * 269.72278 * 9 8 2 11 11 C 1.42902 * 113.99935 * 179.97438 * 10 9 8 12 12 H 1.08998 * 110.64069 * 328.31401 * 11 10 9 13 13 C 1.55448 * 110.70807 * 205.00306 * 11 10 9 14 14 C 1.54905 * 101.45165 * 206.14636 * 13 11 10 15 15 N 1.47419 * 104.92834 * 37.00468 * 14 13 11 16 16 C 1.36940 * 125.65165 * 155.84166 * 15 14 13 17 17 H 1.08001 * 120.00359 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99579 * 359.97016 * 16 15 14 19 19 N 1.31621 * 120.00215 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47351 * 89.99931 * 20 18 16 22 22 H 1.48502 * 109.46991 * 209.99842 * 20 18 16 23 23 H 1.48496 * 109.47037 * 329.99511 * 20 18 16 24 24 C 1.47026 * 108.70576 * 335.81449 * 15 14 13 25 25 H 1.09004 * 109.47114 * 270.21132 * 1 2 3 26 26 H 1.09000 * 109.47307 * 30.20911 * 1 2 3 27 27 H 1.08997 * 109.47261 * 150.21682 * 1 2 3 28 28 H 1.07993 * 120.00021 * 0.04431 * 3 2 1 29 29 H 1.07999 * 119.99943 * 179.79016 * 4 3 2 30 30 H 1.07993 * 119.99875 * 179.97438 * 5 4 3 31 31 H 1.08999 * 109.47606 * 269.97393 * 7 6 5 32 32 H 1.08999 * 109.47275 * 29.98137 * 7 6 5 33 33 H 1.09005 * 109.46579 * 149.98041 * 7 6 5 34 34 H 1.08998 * 109.47238 * 149.72312 * 9 8 2 35 35 H 1.09002 * 109.47225 * 29.72353 * 9 8 2 36 36 H 1.09002 * 111.11560 * 88.08951 * 13 11 10 37 37 H 1.09004 * 111.00873 * 324.15360 * 13 11 10 38 38 H 1.09002 * 110.36692 * 278.10842 * 14 13 11 39 39 H 1.08995 * 110.36664 * 155.89643 * 14 13 11 40 40 H 0.96996 * 120.00198 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.88266 * 120.47537 * 24 15 14 42 42 H 1.09000 * 109.88221 * 241.64354 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 -0.0052 5 6 4.2717 0.0000 -0.0056 6 6 3.5805 -1.1972 -0.0014 7 6 4.3340 -2.5022 -0.0024 8 6 2.1982 -1.1971 0.0045 9 6 1.4447 -2.5022 0.0088 10 8 1.2116 -2.9132 1.3575 11 6 0.4993 -4.1465 1.4744 12 1 -0.1938 -4.2703 0.6423 13 6 -0.2496 -4.2219 2.8345 14 6 -0.3386 -5.7531 3.0520 15 7 0.9360 -6.2847 2.5363 16 6 1.5186 -7.4657 2.9120 17 1 2.4579 -7.7681 2.4731 18 6 0.9017 -8.2741 3.8569 19 7 -0.2433 -7.9057 4.3914 20 14 1.6966 -9.8848 4.3698 21 1 2.5976 -9.6461 5.5259 22 1 0.6420 -10.8562 4.7565 23 1 2.4820 -10.4327 3.2349 24 6 1.4780 -5.3372 1.5514 25 1 -0.3633 0.0038 1.0277 26 1 -0.3634 0.8881 -0.5171 27 1 -0.3633 -0.8919 -0.5104 28 1 1.6582 2.1324 0.0007 29 1 4.1205 2.1325 -0.0086 30 1 5.3516 0.0000 -0.0100 31 1 4.5115 -2.8186 -1.0303 32 1 5.2885 -2.3711 0.5074 33 1 3.7470 -3.2610 0.5150 34 1 2.0318 -3.2624 -0.5064 35 1 0.4903 -2.3725 -0.5016 36 1 -1.2430 -3.7793 2.7608 37 1 0.3300 -3.7478 3.6265 38 1 -1.1769 -6.1677 2.4921 39 1 -0.4427 -5.9800 4.1130 40 1 -0.6742 -8.4704 5.0519 41 1 2.4599 -4.9897 1.8727 42 1 1.5536 -5.8187 0.5764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222826475.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:31 Heat of formation + Delta-G solvation = -18.297772 kcal Electronic energy + Delta-G solvation = -21274.640240 eV Core-core repulsion = 18219.373021 eV Total energy + Delta-G solvation = -3055.267220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86345 -39.63983 -37.46275 -34.48724 -34.35527 -33.31230 -31.09547 -29.26548 -28.53083 -27.51930 -26.78956 -26.02761 -22.19746 -21.80031 -21.66146 -21.59398 -18.99749 -17.98581 -17.19587 -17.17240 -16.73420 -16.17626 -15.76743 -15.43046 -14.93911 -14.75957 -14.63350 -14.26801 -14.04373 -13.80742 -13.62416 -13.54008 -13.47148 -13.15508 -12.97641 -12.86630 -12.64877 -12.46634 -12.28650 -12.15969 -12.02817 -11.83082 -11.78821 -11.50738 -11.34737 -10.76773 -10.46714 -9.60935 -9.43056 -8.92465 -7.79263 -5.24738 0.35090 0.47265 1.46355 1.48838 1.57435 2.45906 2.57445 3.06992 3.31510 3.70920 3.77836 3.82650 3.91213 4.01917 4.10150 4.13402 4.18601 4.22177 4.38516 4.45857 4.58401 4.63503 4.73163 4.77224 4.78942 4.81956 4.84575 4.96951 4.98148 4.99746 5.03144 5.06103 5.28470 5.37412 5.43512 5.58935 5.59175 5.64635 5.76392 5.77224 6.13891 6.25991 6.33739 7.08197 7.74407 8.38206 9.22854 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.003826 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.158960 B = 7316.888787 C = 7970.176936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.110 4.110 5 C -0.141 4.141 6 C -0.077 4.077 7 C -0.120 4.120 8 C -0.114 4.114 9 C 0.095 3.905 10 O -0.378 6.378 11 C 0.092 3.908 12 H 0.084 0.916 13 C -0.123 4.123 14 C 0.155 3.845 15 N -0.625 5.625 16 C -0.244 4.244 17 H 0.079 0.921 18 C -0.065 4.065 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.270 1.270 24 C 0.115 3.885 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.060 0.940 38 H -0.003 1.003 39 H 0.077 0.923 40 H 0.249 0.751 41 H 0.024 0.976 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 18.522 -11.384 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.075 4.075 3 C -0.157 4.157 4 C -0.128 4.128 5 C -0.159 4.159 6 C -0.077 4.077 7 C -0.176 4.176 8 C -0.114 4.114 9 C 0.019 3.981 10 O -0.297 6.297 11 C 0.033 3.967 12 H 0.101 0.899 13 C -0.161 4.161 14 C 0.030 3.970 15 N -0.352 5.352 16 C -0.373 4.373 17 H 0.097 0.903 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.195 1.195 24 C -0.011 4.011 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.015 0.985 39 H 0.095 0.905 40 H 0.059 0.941 41 H 0.042 0.958 42 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.351 18.459 -11.120 21.985 hybrid contribution 0.250 -1.312 0.254 1.360 sum 4.602 17.147 -10.867 20.815 Atomic orbital electron populations 1.20895 0.90120 1.03532 1.02792 1.20081 0.97149 0.92554 0.97709 1.21306 0.94738 0.97739 1.01904 1.21493 0.94456 0.98709 0.98123 1.21276 1.00773 0.91725 1.02147 1.20044 0.93160 0.96490 0.97988 1.20877 1.00035 0.93874 1.02845 1.19493 0.93432 0.93990 1.04474 1.21481 0.99079 0.93344 0.84159 1.88008 1.76805 1.38416 1.26484 1.23042 0.92200 0.82876 0.98541 0.89863 1.22989 1.00175 0.97240 0.95738 1.21740 0.86192 0.88522 1.00577 1.44696 1.23176 1.20798 1.46543 1.19462 1.03772 0.95478 1.18557 0.90281 1.25662 0.97870 1.02598 0.99615 1.70025 1.18561 1.38770 1.32432 0.85012 0.77087 0.78629 0.78180 1.21178 1.21692 1.19495 1.21854 0.96376 0.90751 0.92101 0.91183 0.89637 0.91316 0.83820 0.83413 0.84301 0.89927 0.90509 0.92763 0.92547 0.90970 0.88900 0.92145 0.98456 0.90473 0.94135 0.95848 0.95613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.60 71.23 0.68 -1.53 16 2 C -0.07 -1.72 5.88 -19.87 -0.12 -1.83 16 3 C -0.14 -2.69 9.70 22.27 0.22 -2.47 16 4 C -0.11 -2.01 10.05 22.27 0.22 -1.79 16 5 C -0.14 -2.94 9.70 22.27 0.22 -2.72 16 6 C -0.08 -1.92 5.88 -19.87 -0.12 -2.03 16 7 C -0.12 -2.82 9.19 71.23 0.65 -2.16 16 8 C -0.11 -3.00 5.51 -19.87 -0.11 -3.11 16 9 C 0.09 2.62 4.72 71.24 0.34 2.96 16 10 O -0.38 -12.99 10.04 -148.98 -1.50 -14.49 16 11 C 0.09 3.37 3.41 31.88 0.11 3.48 16 12 H 0.08 2.72 7.88 -2.39 -0.02 2.70 16 13 C -0.12 -4.91 6.83 32.09 0.22 -4.69 16 14 C 0.15 7.87 5.88 86.85 0.51 8.38 16 15 N -0.62 -33.77 3.39 -692.01 -2.35 -36.12 16 16 C -0.24 -14.15 10.27 84.03 0.86 -13.29 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.75 5.49 84.86 0.47 -3.28 16 19 N -0.95 -57.21 10.09 21.65 0.22 -56.99 16 20 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 C 0.11 5.09 7.02 86.73 0.61 5.69 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 27 H 0.07 1.29 5.94 -2.39 -0.01 1.27 16 28 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 33 H 0.05 1.53 6.69 -2.38 -0.02 1.52 16 34 H 0.06 1.53 6.70 -2.39 -0.02 1.52 16 35 H 0.07 1.73 5.90 -2.39 -0.01 1.72 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.08 4.45 5.87 -2.39 -0.01 4.44 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.02 1.08 8.06 -2.39 -0.02 1.06 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -67.98 335.91 4.15 -63.83 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.99 Total: 13.90 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 4.76 Total: -18.40 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -2.13 Total: -93.12 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -1.50 Total: -14.49 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -67.98 4.15 -63.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222826475.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.531 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds