Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 O 1.42903 * 109.47026 * 270.21473 * 9 8 2 11 11 C 1.42900 * 113.99706 * 179.97438 * 10 9 8 12 12 C 1.53939 * 113.73691 * 248.77085 * 11 10 9 13 13 N 1.48194 * 86.09742 * 221.95889 * 12 11 10 14 14 C 1.46901 * 111.06719 * 137.52107 * 13 12 11 15 15 C 1.50705 * 109.46896 * 70.56622 * 14 13 12 16 16 H 1.07998 * 120.00220 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99583 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00073 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00039 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46768 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47299 * 119.99362 * 19 17 15 22 22 H 1.48503 * 109.47226 * 239.99661 * 19 17 15 23 23 C 1.47954 * 90.80064 * 24.60094 * 13 12 11 24 24 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 25 25 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 26 26 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 27 27 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 29 29 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 31 31 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 32 32 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 33 33 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 34 34 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 35 35 H 1.09005 * 112.93908 * 20.34128 * 11 10 9 36 36 H 1.08997 * 113.75639 * 336.24304 * 12 11 10 37 37 H 1.09001 * 113.75731 * 107.60590 * 12 11 10 38 38 H 1.08993 * 109.46975 * 190.56305 * 14 13 12 39 39 H 1.08999 * 109.46954 * 310.56370 * 14 13 12 40 40 H 0.97005 * 119.99495 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.75845 * 221.08494 * 23 13 12 42 42 H 1.09004 * 113.76264 * 89.71937 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 8 1.2017 -2.9173 1.3362 11 6 0.4886 -4.1509 1.4441 12 6 -0.9396 -3.9948 1.9970 13 7 -0.6537 -5.2088 2.7973 14 6 -1.1549 -5.0660 4.1708 15 6 -2.6614 -5.1079 4.1627 16 1 -3.1932 -5.2282 3.2305 17 6 -3.3605 -4.9916 5.3453 18 7 -2.7128 -4.8447 6.4804 19 14 -5.2278 -5.0428 5.3353 20 1 -5.7108 -5.2143 3.9416 21 1 -5.6963 -6.1815 6.1656 22 1 -5.7609 -3.7729 5.8908 23 6 0.7988 -4.9353 2.7318 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6581 2.1326 0.0004 28 1 4.1204 2.1326 0.0100 29 1 5.3516 0.0002 0.0096 30 1 4.5118 -2.8187 1.0287 31 1 3.7470 -3.2607 -0.5166 32 1 5.2885 -2.3708 -0.5089 33 1 0.4942 -2.3709 -0.5265 34 1 2.0358 -3.2608 -0.5225 35 1 0.5448 -4.7548 0.5383 36 1 -1.0822 -3.0964 2.5974 37 1 -1.7184 -4.1349 1.2473 38 1 -0.7721 -5.8817 4.7839 39 1 -0.8201 -4.1139 4.5825 40 1 -3.2047 -4.7632 7.3125 41 1 1.4063 -5.8253 2.5682 42 1 1.1657 -4.3125 3.5477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222827780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = 5.974522 kcal Electronic energy + Delta-G solvation = -20922.597805 eV Core-core repulsion = 17868.383111 eV Total energy + Delta-G solvation = -3054.214694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.01318 -39.13686 -36.41280 -33.67748 -32.93834 -32.44343 -29.13834 -27.97984 -26.73839 -25.76517 -25.57157 -24.64652 -21.50364 -20.95133 -20.78289 -19.27598 -16.88712 -16.44623 -16.36087 -16.16553 -15.29252 -14.68128 -14.48223 -14.33949 -14.09687 -13.65372 -13.26543 -13.11883 -13.04244 -12.97503 -12.72712 -12.12777 -12.06368 -11.90323 -11.83329 -11.67067 -11.37315 -11.20940 -10.93434 -10.77952 -10.72263 -10.53883 -10.24441 -9.65328 -9.14221 -9.11003 -8.75842 -8.61742 -8.48282 -7.78864 -6.03741 -4.05573 1.20022 1.29262 3.30691 3.37773 3.42765 3.49103 4.10850 4.43139 4.67046 4.68686 4.83166 4.86797 4.91757 4.98153 5.11193 5.20768 5.28486 5.32410 5.36902 5.42559 5.55686 5.59557 5.60184 5.61860 5.77497 5.85438 5.92716 6.07053 6.15965 6.18386 6.21327 6.38677 6.43152 6.45599 6.51751 6.61464 6.70370 6.93337 7.25672 7.50467 7.64773 7.89363 8.12667 8.43023 9.01835 9.58770 11.07622 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003602 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.482053 B = 7771.057703 C = 8312.152001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.133 4.133 4 C -0.110 4.110 5 C -0.134 4.134 6 C -0.062 4.062 7 C -0.118 4.118 8 C -0.090 4.090 9 C 0.098 3.902 10 O -0.367 6.367 11 C 0.050 3.950 12 C 0.006 3.994 13 N -0.476 5.476 14 C 0.163 3.837 15 C -0.509 4.509 16 H 0.062 0.938 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.002 3.998 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.000 1.000 40 H 0.261 0.739 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.858 9.688 -15.640 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C -0.151 4.151 4 C -0.128 4.128 5 C -0.152 4.152 6 C -0.062 4.062 7 C -0.175 4.175 8 C -0.090 4.090 9 C 0.021 3.979 10 O -0.286 6.286 11 C -0.008 4.008 12 C -0.123 4.123 13 N -0.201 5.201 14 C 0.037 3.963 15 C -0.548 4.548 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.127 4.127 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.620 9.169 -15.472 21.971 hybrid contribution -0.807 0.712 0.446 1.165 sum 11.812 9.881 -15.026 21.516 Atomic orbital electron populations 1.20905 0.90969 1.03827 1.02219 1.19821 0.96257 0.92406 0.97295 1.20997 0.94258 0.97393 1.02437 1.21108 0.94315 0.97872 0.99485 1.20962 0.99598 0.91946 1.02669 1.19785 0.93025 0.95563 0.97796 1.20875 0.99376 0.94262 1.02944 1.19379 0.92905 0.93894 1.02833 1.21345 0.98038 0.92863 0.85625 1.88081 1.76299 1.39627 1.24552 1.24438 0.92892 0.84963 0.98474 1.24225 0.95292 0.94915 0.97892 1.68555 1.02668 1.33076 1.15796 1.20198 0.96154 0.96184 0.83788 1.21129 0.90808 1.49437 0.93423 0.91963 1.24999 0.98828 0.95317 0.95443 1.69975 1.35501 1.50217 0.97982 0.86435 0.85298 0.77547 0.78122 1.19658 1.20946 1.21047 1.24135 0.94444 0.98066 0.96040 0.91200 0.90356 0.91372 0.86106 0.86191 0.86174 0.90555 0.91226 0.91766 0.92457 0.92461 0.89494 0.90779 0.90482 0.94927 0.98177 0.92932 0.90088 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.19 36.00 0.33 -1.03 16 2 C -0.06 -0.71 5.88 -104.63 -0.62 -1.32 16 3 C -0.13 -1.45 9.70 -39.58 -0.38 -1.84 16 4 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.13 -1.41 9.70 -39.58 -0.38 -1.80 16 6 C -0.06 -0.72 5.88 -104.62 -0.62 -1.34 16 7 C -0.12 -1.15 9.61 36.01 0.35 -0.81 16 8 C -0.09 -1.16 5.51 -104.62 -0.58 -1.73 16 9 C 0.10 1.25 4.68 36.01 0.17 1.41 16 10 O -0.37 -5.88 10.33 -35.23 -0.36 -6.25 16 11 C 0.05 0.83 4.48 -25.80 -0.12 0.71 16 12 C 0.01 0.12 7.32 -2.63 -0.02 0.10 16 13 N -0.48 -10.65 6.25 -239.76 -1.50 -12.15 16 14 C 0.16 4.38 4.58 -4.97 -0.02 4.36 16 15 C -0.51 -14.67 8.84 -34.44 -0.30 -14.97 16 16 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 19 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.00 0.04 7.81 -2.76 -0.02 0.02 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.99 6.70 -51.93 -0.35 0.64 16 26 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.65 5.95 -51.93 -0.31 0.34 16 32 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 34 H 0.06 0.64 5.95 -51.93 -0.31 0.33 16 35 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 36 H 0.07 1.59 7.79 -51.93 -0.40 1.18 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.00 0.01 7.70 -51.93 -0.40 -0.39 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.38 7.79 -51.93 -0.40 0.98 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -31.73 343.05 -10.39 -42.12 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -6.70 Total: -1.15 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.71 Total: -18.24 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.76 Total: -38.54 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.36 Total: -6.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.73 -10.39 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222827780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.094 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds