Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 O 1.42903 * 109.47026 * 270.21473 * 9 8 2 11 11 C 1.42900 * 113.99706 * 179.97438 * 10 9 8 12 12 C 1.53939 * 113.73691 * 248.77085 * 11 10 9 13 13 N 1.48194 * 86.09742 * 221.95889 * 12 11 10 14 14 C 1.46901 * 111.06719 * 137.52107 * 13 12 11 15 15 C 1.50705 * 109.46896 * 70.56622 * 14 13 12 16 16 H 1.07998 * 120.00220 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99583 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00073 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00039 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46768 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47299 * 119.99362 * 19 17 15 22 22 H 1.48503 * 109.47226 * 239.99661 * 19 17 15 23 23 C 1.47954 * 90.80064 * 24.60094 * 13 12 11 24 24 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 25 25 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 26 26 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 27 27 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 29 29 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 31 31 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 32 32 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 33 33 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 34 34 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 35 35 H 1.09005 * 112.93908 * 20.34128 * 11 10 9 36 36 H 1.08997 * 113.75639 * 336.24304 * 12 11 10 37 37 H 1.09001 * 113.75731 * 107.60590 * 12 11 10 38 38 H 1.08993 * 109.46975 * 190.56305 * 14 13 12 39 39 H 1.08999 * 109.46954 * 310.56370 * 14 13 12 40 40 H 0.97005 * 119.99495 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.75845 * 221.08494 * 23 13 12 42 42 H 1.09004 * 113.76264 * 89.71937 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 8 1.2017 -2.9173 1.3362 11 6 0.4886 -4.1509 1.4441 12 6 -0.9396 -3.9948 1.9970 13 7 -0.6537 -5.2088 2.7973 14 6 -1.1549 -5.0660 4.1708 15 6 -2.6614 -5.1079 4.1627 16 1 -3.1932 -5.2282 3.2305 17 6 -3.3605 -4.9916 5.3453 18 7 -2.7128 -4.8447 6.4804 19 14 -5.2278 -5.0428 5.3353 20 1 -5.7108 -5.2143 3.9416 21 1 -5.6963 -6.1815 6.1656 22 1 -5.7609 -3.7729 5.8908 23 6 0.7988 -4.9353 2.7318 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6581 2.1326 0.0004 28 1 4.1204 2.1326 0.0100 29 1 5.3516 0.0002 0.0096 30 1 4.5118 -2.8187 1.0287 31 1 3.7470 -3.2607 -0.5166 32 1 5.2885 -2.3708 -0.5089 33 1 0.4942 -2.3709 -0.5265 34 1 2.0358 -3.2608 -0.5225 35 1 0.5448 -4.7548 0.5383 36 1 -1.0822 -3.0964 2.5974 37 1 -1.7184 -4.1349 1.2473 38 1 -0.7721 -5.8817 4.7839 39 1 -0.8201 -4.1139 4.5825 40 1 -3.2047 -4.7632 7.3125 41 1 1.4063 -5.8253 2.5682 42 1 1.1657 -4.3125 3.5477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222827780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -14.118856 kcal Electronic energy + Delta-G solvation = -20923.469119 eV Core-core repulsion = 17868.383111 eV Total energy + Delta-G solvation = -3055.086008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08220 -40.46398 -37.71877 -35.01019 -34.49135 -33.46182 -31.00345 -28.95281 -27.53587 -27.29739 -26.92677 -26.22669 -23.40542 -21.82655 -21.60569 -20.82026 -18.66643 -18.02569 -17.36308 -17.27114 -16.74178 -16.27487 -15.77207 -15.67702 -15.25436 -14.79172 -14.60657 -14.29416 -14.03390 -13.91780 -13.81514 -13.70147 -13.51890 -13.41863 -13.02077 -12.85415 -12.74809 -12.56324 -12.48892 -12.19652 -12.17743 -11.79400 -11.60063 -11.45601 -11.18380 -10.68074 -10.41302 -9.70387 -9.57551 -9.44105 -8.25881 -6.37204 0.33949 0.46161 1.38629 1.39460 1.53447 2.36925 2.53055 3.03091 3.07462 3.29626 3.53667 3.79224 3.87967 3.98976 4.08825 4.12785 4.21048 4.36393 4.42605 4.45255 4.56219 4.59373 4.69327 4.74423 4.76617 4.78852 4.81275 4.84397 4.89638 4.96031 4.98002 5.02021 5.12322 5.27728 5.36448 5.48633 5.58026 5.63581 5.73637 5.75699 6.07442 6.12936 6.29154 6.35305 6.77762 7.32907 8.86453 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.003602 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.482053 B = 7771.057703 C = 8312.152001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.111 4.111 5 C -0.141 4.141 6 C -0.075 4.075 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.095 3.905 10 O -0.384 6.384 11 C 0.081 3.919 12 C 0.000 4.000 13 N -0.488 5.488 14 C 0.179 3.821 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.002 4.002 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.138 0.862 28 H 0.146 0.854 29 H 0.142 0.858 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.004 0.996 39 H -0.031 1.031 40 H 0.266 0.734 41 H 0.107 0.893 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.061 10.171 -17.500 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.077 4.077 3 C -0.161 4.161 4 C -0.129 4.129 5 C -0.159 4.159 6 C -0.075 4.075 7 C -0.173 4.173 8 C -0.116 4.116 9 C 0.020 3.980 10 O -0.303 6.303 11 C 0.022 3.978 12 C -0.129 4.129 13 N -0.212 5.212 14 C 0.052 3.948 15 C -0.567 4.567 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.131 4.131 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.156 0.844 28 H 0.164 0.836 29 H 0.160 0.840 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.022 0.978 39 H -0.013 1.013 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.839 9.654 -17.354 23.648 hybrid contribution -0.766 0.641 0.999 1.413 sum 12.073 10.296 -16.356 22.788 Atomic orbital electron populations 1.20881 0.90691 1.03043 1.03003 1.20072 0.96791 0.92988 0.97852 1.21285 0.94952 0.97659 1.02239 1.21485 0.94238 0.98994 0.98194 1.21308 1.00865 0.91702 1.02018 1.20103 0.92917 0.96889 0.97640 1.20894 1.00237 0.93465 1.02698 1.19547 0.93670 0.93973 1.04420 1.21525 0.98854 0.93629 0.83999 1.88063 1.75863 1.39264 1.27085 1.24097 0.89980 0.85282 0.98405 1.24250 0.98385 0.92739 0.97521 1.68449 1.05193 1.34579 1.12949 1.19837 0.95683 0.93266 0.86043 1.21432 0.91810 1.49789 0.93690 0.91958 1.25986 1.04434 0.94487 0.94859 1.70104 1.37800 1.50783 0.98770 0.85271 0.78445 0.77887 0.78646 1.18577 1.20114 1.20235 1.24210 0.92434 0.99467 0.96958 0.89630 0.92405 0.90803 0.84435 0.83607 0.83975 0.91389 0.90906 0.89756 0.91785 0.90529 0.86171 0.93408 0.89215 0.97817 1.01330 0.92542 0.87498 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.19 71.24 0.65 -1.95 16 2 C -0.08 -1.83 5.88 -19.87 -0.12 -1.95 16 3 C -0.14 -2.94 9.70 22.27 0.22 -2.72 16 4 C -0.11 -2.04 10.05 22.27 0.22 -1.81 16 5 C -0.14 -2.70 9.70 22.27 0.22 -2.48 16 6 C -0.08 -1.66 5.88 -19.86 -0.12 -1.78 16 7 C -0.12 -2.07 9.61 71.24 0.68 -1.38 16 8 C -0.12 -2.88 5.51 -19.87 -0.11 -2.99 16 9 C 0.10 2.32 4.68 71.24 0.33 2.65 16 10 O -0.38 -12.09 10.33 -148.98 -1.54 -13.63 16 11 C 0.08 2.56 4.48 31.24 0.14 2.70 16 12 C 0.00 0.01 7.32 86.37 0.63 0.64 16 13 N -0.49 -22.14 6.25 -915.67 -5.72 -27.87 16 14 C 0.18 10.06 4.58 85.56 0.39 10.45 16 15 C -0.53 -31.15 8.84 25.60 0.23 -30.92 16 16 H 0.06 3.59 7.80 -2.91 -0.02 3.56 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 19 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.00 -0.07 7.81 86.41 0.67 0.61 16 24 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.48 6.70 -2.39 -0.02 1.46 16 26 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 27 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.21 5.95 -2.39 -0.01 1.20 16 32 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 33 H 0.06 1.45 6.72 -2.39 -0.02 1.43 16 34 H 0.08 1.54 5.95 -2.39 -0.01 1.53 16 35 H 0.12 3.07 7.89 -2.38 -0.02 3.05 16 36 H 0.05 2.14 7.79 -2.39 -0.02 2.12 16 37 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 39 H -0.03 -1.89 7.70 -2.39 -0.02 -1.91 16 40 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 41 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.05 2.13 7.79 -2.38 -0.02 2.11 16 Total: -1.00 -69.90 343.05 0.55 -69.35 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.99 Total: 12.98 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 4.51 Total: -30.45 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -5.44 Total: -85.38 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.54 Total: -13.63 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.90 0.55 -69.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222827780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.229 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds