Wall clock time and date at job start Mon Mar 30 2020 02:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00155 * 2 1 4 4 C 1.38209 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00305 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00284 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46800 * 90.00061 * 6 5 4 8 8 C 1.42904 * 113.99749 * 179.97438 * 7 6 5 9 9 C 1.53514 * 114.17059 * 210.00163 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.13896 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 C 1.38219 * 119.99755 * 0.25333 * 5 4 3 22 22 C 1.38214 * 120.00133 * 180.02562 * 2 1 3 23 23 C 1.50702 * 119.99578 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.46852 * 90.00140 * 1 2 3 25 25 H 1.08998 * 109.47749 * 210.00300 * 1 2 3 26 26 H 1.09002 * 109.47617 * 330.00619 * 1 2 3 27 27 H 1.08000 * 120.00021 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.99749 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47120 * 330.00068 * 6 5 4 30 30 H 1.08998 * 109.47232 * 209.99927 * 6 5 4 31 31 H 1.09002 * 113.25611 * 342.95779 * 8 7 6 32 32 H 1.09000 * 113.47331 * 105.37574 * 9 8 7 33 33 H 1.08995 * 113.52785 * 334.91164 * 9 8 7 34 34 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 35 35 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 38 38 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 39 39 H 1.07992 * 119.99814 * 179.72209 * 21 5 4 40 40 H 1.09002 * 109.47156 * 90.00104 * 23 22 2 41 41 H 1.08998 * 109.46820 * 209.99741 * 23 22 2 42 42 H 1.08997 * 109.47375 * 330.00050 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 8 6.2560 0.0005 1.3452 8 6 7.6806 0.0000 1.4570 9 6 8.2121 -0.6998 2.7157 10 7 9.2130 0.3776 2.8271 11 6 9.3789 0.7997 4.2244 12 6 10.5700 1.7162 4.3343 13 1 11.1465 1.9605 3.4543 14 6 10.9245 2.2423 5.5585 15 7 10.2227 1.9445 6.6303 16 14 12.4014 3.3778 5.6948 17 1 13.6203 2.5742 5.9660 18 1 12.5725 4.1225 4.4215 19 1 12.1853 4.3396 6.8055 20 6 8.2639 1.2564 2.1186 21 6 3.5806 -1.1970 -0.0053 22 6 2.1981 -1.1969 -0.0005 23 6 1.4445 -2.5020 -0.0017 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 6.1416 0.8897 -0.5162 30 1 6.1416 -0.8903 -0.5154 31 1 8.1845 -0.2943 0.5363 32 1 8.6483 -1.6788 2.5168 33 1 7.4980 -0.7159 3.5390 34 1 9.5359 -0.0772 4.8526 35 1 8.4832 1.3267 4.5534 36 1 10.4724 2.3142 7.4916 37 1 7.5630 1.7629 2.7821 38 1 8.7440 1.9353 1.4138 39 1 4.1206 -2.1322 -0.0098 40 1 1.2632 -2.8160 -1.0297 41 1 2.0334 -3.2620 0.5118 42 1 0.4919 -2.3720 0.5118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222850929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:49 Heat of formation + Delta-G solvation = 7.347528 kcal Electronic energy + Delta-G solvation = -20229.696984 eV Core-core repulsion = 17175.541828 eV Total energy + Delta-G solvation = -3054.155156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92699 -39.37654 -36.68028 -33.77815 -32.78998 -32.33496 -29.39050 -28.40152 -27.21089 -25.37613 -25.08177 -24.31039 -22.24385 -21.52499 -20.30754 -19.35603 -16.93199 -16.30777 -16.20057 -16.00824 -15.33511 -14.81932 -14.76014 -14.49187 -14.34523 -13.75989 -13.38756 -13.24548 -13.04026 -12.97199 -12.70526 -12.21688 -12.16543 -12.02636 -11.84146 -11.80877 -11.25815 -11.18052 -11.01441 -10.85780 -10.79315 -10.50908 -10.17074 -9.73831 -9.20925 -9.10614 -8.86995 -8.62204 -8.41375 -7.89905 -6.01497 -4.02816 1.13576 1.28216 3.33615 3.38924 3.42338 3.44119 4.08043 4.44989 4.58669 4.62682 4.78976 4.85202 4.86303 4.98958 5.02745 5.12546 5.25386 5.27928 5.33690 5.33817 5.39339 5.44540 5.48966 5.58057 5.61473 5.66880 5.91882 5.98718 6.04063 6.11591 6.20556 6.30841 6.34691 6.43186 6.48272 6.52622 6.62140 6.89384 7.22286 7.46489 7.67060 7.87593 8.12152 8.46975 9.04414 9.60961 11.09691 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033580 B = 0.002780 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.618207 B =10069.210029 C =10246.269970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.087 4.087 6 C 0.102 3.898 7 O -0.368 6.368 8 C 0.050 3.950 9 C -0.003 4.003 10 N -0.464 5.464 11 C 0.161 3.839 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.900 3.100 17 H -0.280 1.280 18 H -0.273 1.273 19 H -0.287 1.287 20 C -0.004 4.004 21 C -0.095 4.095 22 C -0.093 4.093 23 C -0.116 4.116 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.005 0.995 36 H 0.261 0.739 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.771 -5.934 -16.122 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.117 4.117 5 C -0.087 4.087 6 C 0.025 3.975 7 O -0.286 6.286 8 C -0.008 4.008 9 C -0.132 4.132 10 N -0.189 5.189 11 C 0.035 3.965 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.148 4.148 15 N -0.540 5.540 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.213 1.213 20 C -0.134 4.134 21 C -0.114 4.114 22 C -0.093 4.093 23 C -0.172 4.172 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.140 0.860 28 H 0.142 0.858 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.205 -5.984 -15.975 24.949 hybrid contribution 0.272 0.863 0.542 1.055 sum -17.933 -5.120 -15.433 24.208 Atomic orbital electron populations 1.20856 0.91407 1.02872 1.02194 1.19775 0.95913 0.92734 1.00211 1.20992 0.94085 0.97452 1.01346 1.21061 0.94124 0.97715 0.98849 1.19635 0.94469 0.93419 1.01210 1.21317 0.90169 1.00712 0.85272 1.88048 1.21276 1.94566 1.24749 1.24034 0.79766 0.98519 0.98440 1.24044 0.94732 0.98141 0.96278 1.68952 1.28571 1.03548 1.17787 1.20263 0.97099 0.96183 0.82950 1.21099 1.11963 1.27235 0.94027 0.91858 1.25020 0.97156 0.96909 0.95708 1.69965 1.39721 1.45119 0.99150 0.86461 0.82684 0.80424 0.77627 1.20602 1.19837 1.21283 1.24240 0.94623 0.96040 0.98495 1.20922 0.93369 0.97653 0.99410 1.19722 0.93579 0.94927 1.01078 1.20844 1.00113 0.94111 1.02181 0.91260 0.91173 0.91627 0.86015 0.85837 0.92476 0.92637 0.88837 0.90387 0.91297 0.95254 0.97688 0.92901 0.91087 0.90630 0.85966 0.91296 0.91535 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.60 36.00 0.35 -0.49 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.27 9.70 -39.59 -0.38 -1.65 16 4 C -0.10 -1.16 9.70 -39.59 -0.38 -1.55 16 5 C -0.09 -1.08 5.51 -104.62 -0.58 -1.66 16 6 C 0.10 1.27 5.90 36.01 0.21 1.49 16 7 O -0.37 -5.93 10.38 -35.23 -0.37 -6.30 16 8 C 0.05 0.84 4.65 -26.20 -0.12 0.71 16 9 C 0.00 -0.05 7.52 -7.53 -0.06 -0.11 16 10 N -0.46 -10.55 6.32 -246.08 -1.55 -12.10 16 11 C 0.16 4.38 4.57 -4.98 -0.02 4.35 16 12 C -0.50 -14.77 9.39 -34.44 -0.32 -15.10 16 13 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 16 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.00 -0.09 7.56 -7.54 -0.06 -0.15 16 21 C -0.10 -1.09 9.36 -39.58 -0.37 -1.46 16 22 C -0.09 -0.96 5.88 -104.62 -0.62 -1.58 16 23 C -0.12 -0.88 9.60 36.01 0.35 -0.53 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.44 5.95 -51.93 -0.31 0.13 16 26 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 29 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.09 1.35 7.88 -51.93 -0.41 0.94 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 34 H 0.03 0.85 8.08 -51.92 -0.42 0.43 16 35 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 1.50 7.42 -51.93 -0.39 1.11 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.07 0.46 5.95 -51.93 -0.31 0.15 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -32.28 346.82 -10.50 -42.78 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.81 Total: -2.33 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.72 Total: -17.74 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.82 Total: -38.77 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.37 Total: -6.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.28 -10.50 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222850929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.127 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds