Wall clock time and date at job start Mon Mar 30 2020 02:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00155 * 2 1 4 4 C 1.38209 * 120.00031 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00305 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00284 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46800 * 90.00061 * 6 5 4 8 8 C 1.42904 * 113.99749 * 179.97438 * 7 6 5 9 9 C 1.53514 * 114.17059 * 210.00163 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.13896 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 C 1.38219 * 119.99755 * 0.25333 * 5 4 3 22 22 C 1.38214 * 120.00133 * 180.02562 * 2 1 3 23 23 C 1.50702 * 119.99578 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.46852 * 90.00140 * 1 2 3 25 25 H 1.08998 * 109.47749 * 210.00300 * 1 2 3 26 26 H 1.09002 * 109.47617 * 330.00619 * 1 2 3 27 27 H 1.08000 * 120.00021 * 359.97438 * 3 2 1 28 28 H 1.08006 * 119.99749 * 179.97438 * 4 3 2 29 29 H 1.08997 * 109.47120 * 330.00068 * 6 5 4 30 30 H 1.08998 * 109.47232 * 209.99927 * 6 5 4 31 31 H 1.09002 * 113.25611 * 342.95779 * 8 7 6 32 32 H 1.09000 * 113.47331 * 105.37574 * 9 8 7 33 33 H 1.08995 * 113.52785 * 334.91164 * 9 8 7 34 34 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 35 35 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 37 37 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 38 38 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 39 39 H 1.07992 * 119.99814 * 179.72209 * 21 5 4 40 40 H 1.09002 * 109.47156 * 90.00104 * 23 22 2 41 41 H 1.08998 * 109.46820 * 209.99741 * 23 22 2 42 42 H 1.08997 * 109.47375 * 330.00050 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 8 6.2560 0.0005 1.3452 8 6 7.6806 0.0000 1.4570 9 6 8.2121 -0.6998 2.7157 10 7 9.2130 0.3776 2.8271 11 6 9.3789 0.7997 4.2244 12 6 10.5700 1.7162 4.3343 13 1 11.1465 1.9605 3.4543 14 6 10.9245 2.2423 5.5585 15 7 10.2227 1.9445 6.6303 16 14 12.4014 3.3778 5.6948 17 1 13.6203 2.5742 5.9660 18 1 12.5725 4.1225 4.4215 19 1 12.1853 4.3396 6.8055 20 6 8.2639 1.2564 2.1186 21 6 3.5806 -1.1970 -0.0053 22 6 2.1981 -1.1969 -0.0005 23 6 1.4445 -2.5020 -0.0017 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 6.1416 0.8897 -0.5162 30 1 6.1416 -0.8903 -0.5154 31 1 8.1845 -0.2943 0.5363 32 1 8.6483 -1.6788 2.5168 33 1 7.4980 -0.7159 3.5390 34 1 9.5359 -0.0772 4.8526 35 1 8.4832 1.3267 4.5534 36 1 10.4724 2.3142 7.4916 37 1 7.5630 1.7629 2.7821 38 1 8.7440 1.9353 1.4138 39 1 4.1206 -2.1322 -0.0098 40 1 1.2632 -2.8160 -1.0297 41 1 2.0334 -3.2620 0.5118 42 1 0.4919 -2.3720 0.5118 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222850929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:49 Heat of formation + Delta-G solvation = -13.201359 kcal Electronic energy + Delta-G solvation = -20230.588050 eV Core-core repulsion = 17175.541828 eV Total energy + Delta-G solvation = -3055.046222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13649 -40.52491 -37.95460 -35.09985 -34.49960 -33.09036 -31.16519 -29.39249 -27.95886 -27.11468 -26.74969 -25.27988 -23.44937 -23.02197 -21.24061 -20.79876 -18.68484 -18.00588 -17.24699 -17.02729 -16.62707 -16.31074 -16.02154 -15.79535 -15.25760 -15.00349 -14.84111 -14.29817 -14.15061 -13.97379 -13.71122 -13.57567 -13.43156 -13.31877 -12.97871 -12.84412 -12.71962 -12.53384 -12.45130 -12.22409 -12.10782 -11.78530 -11.72017 -11.60118 -11.23490 -10.64697 -10.42652 -9.79225 -9.67478 -9.40720 -8.25483 -6.36829 0.30146 0.46753 1.38702 1.41209 1.52666 2.36767 2.48009 3.01719 3.06728 3.38379 3.46424 3.79272 3.85856 3.98569 4.05593 4.12274 4.22839 4.33161 4.39244 4.49403 4.52226 4.53903 4.64175 4.69930 4.73453 4.74285 4.84702 4.85378 4.88610 4.91752 5.01226 5.03619 5.05109 5.25144 5.38000 5.51598 5.52766 5.66507 5.71670 5.73622 6.02534 6.11856 6.26360 6.37138 6.77229 7.32856 8.86235 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033580 B = 0.002780 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.618207 B =10069.210029 C =10246.269970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.117 4.117 5 C -0.109 4.109 6 C 0.098 3.902 7 O -0.386 6.386 8 C 0.083 3.917 9 C -0.008 4.008 10 N -0.478 5.478 11 C 0.177 3.823 12 C -0.528 4.528 13 H 0.062 0.938 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.264 1.264 19 H -0.279 1.279 20 C -0.012 4.012 21 C -0.109 4.109 22 C -0.103 4.103 23 C -0.115 4.115 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.139 0.861 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.002 0.998 35 H -0.024 1.024 36 H 0.266 0.734 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 -6.055 -17.740 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.135 4.135 5 C -0.109 4.109 6 C 0.023 3.977 7 O -0.305 6.305 8 C 0.025 3.975 9 C -0.137 4.137 10 N -0.201 5.201 11 C 0.049 3.951 12 C -0.566 4.566 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.195 1.195 18 H -0.188 1.188 19 H -0.205 1.205 20 C -0.141 4.141 21 C -0.127 4.127 22 C -0.103 4.103 23 C -0.171 4.171 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.157 0.843 28 H 0.144 0.856 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.148 0.852 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.625 -6.116 -17.617 26.356 hybrid contribution 0.265 0.866 1.011 1.357 sum -18.360 -5.250 -16.606 25.306 Atomic orbital electron populations 1.20914 0.89290 1.03711 1.03270 1.20184 0.97594 0.92441 0.99105 1.21283 0.93862 0.98639 1.01062 1.21249 0.94959 0.97793 0.99545 1.19756 0.94482 0.94075 1.02621 1.21538 0.90476 1.02190 0.83546 1.88029 1.20594 1.94415 1.27461 1.23723 0.80548 0.94914 0.98314 1.24111 0.93878 0.98398 0.97329 1.68846 1.30859 1.05690 1.14753 1.19916 0.95385 0.94404 0.85346 1.21419 1.12735 1.28092 0.94365 0.92002 1.26017 1.00370 0.98429 0.95119 1.70094 1.41521 1.46166 0.99816 0.85289 0.78540 0.78176 0.78049 1.19535 1.18805 1.20484 1.24286 0.94067 0.97436 0.98329 1.21146 0.94183 0.97718 0.99673 1.20104 0.93504 0.96342 1.00334 1.20895 1.00276 0.92696 1.03223 0.89935 0.90184 0.90986 0.84340 0.85643 0.91418 0.90615 0.85539 0.88178 0.92979 0.98014 1.00647 0.92507 0.93317 0.89409 0.85170 0.89968 0.91379 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.60 71.23 0.68 -0.71 16 2 C -0.09 -1.74 5.88 -19.87 -0.12 -1.85 16 3 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 4 C -0.12 -2.72 9.70 22.27 0.22 -2.50 16 5 C -0.11 -2.64 5.51 -19.86 -0.11 -2.75 16 6 C 0.10 2.32 5.90 71.24 0.42 2.74 16 7 O -0.39 -12.14 10.38 -148.98 -1.55 -13.68 16 8 C 0.08 2.65 4.65 30.94 0.14 2.80 16 9 C -0.01 -0.30 7.52 83.58 0.63 0.32 16 10 N -0.48 -22.02 6.32 -932.86 -5.89 -27.91 16 11 C 0.18 10.00 4.57 85.55 0.39 10.39 16 12 C -0.53 -31.54 9.39 25.60 0.24 -31.30 16 13 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 14 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 15 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 16 Si 0.98 45.49 29.54 68.60 2.03 47.51 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.01 -0.47 7.56 83.58 0.63 0.17 16 21 C -0.11 -2.40 9.36 22.27 0.21 -2.19 16 22 C -0.10 -1.99 5.88 -19.87 -0.12 -2.10 16 23 C -0.11 -1.50 9.60 71.24 0.68 -0.82 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.81 5.95 -2.39 -0.01 0.79 16 26 H 0.07 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 28 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 29 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 30 H 0.08 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.13 3.25 7.88 -2.39 -0.02 3.23 16 32 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.05 2.15 7.91 -2.39 -0.02 2.13 16 34 H 0.00 0.11 8.08 -2.38 -0.02 0.09 16 35 H -0.02 -1.48 7.30 -2.39 -0.02 -1.50 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.05 2.15 7.42 -2.39 -0.02 2.13 16 38 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 42 H 0.08 0.87 5.95 -2.39 -0.01 0.85 16 Total: -1.00 -70.74 346.82 0.44 -70.30 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.98 Total: 11.53 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 4.58 Total: -29.85 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.61 Total: -85.81 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.55 Total: -13.68 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.74 0.44 -70.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222850929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.101 kcal (2) G-P(sol) polarization free energy of solvation -70.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds