Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38253 * 119.99921 * 2 1 4 4 C 1.38217 * 119.99821 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00016 * 359.96249 * 4 3 2 6 6 C 1.50705 * 120.00096 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47280 * 89.99378 * 6 5 4 8 8 C 1.42904 * 114.00025 * 180.02562 * 7 6 5 9 9 H 1.09007 * 110.88381 * 327.57327 * 8 7 6 10 10 C 1.55154 * 111.00601 * 203.65011 * 8 7 6 11 11 C 1.54321 * 102.94494 * 206.42077 * 10 8 7 12 12 N 1.47026 * 107.26801 * 22.19429 * 11 10 8 13 13 C 1.36932 * 125.64654 * 181.02052 * 12 11 10 14 14 H 1.08006 * 119.99949 * 180.02562 * 13 12 11 15 15 C 1.38816 * 120.00526 * 0.04411 * 13 12 11 16 16 N 1.31621 * 119.99425 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00530 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46777 * 59.99885 * 17 15 13 19 19 H 1.48495 * 109.47256 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47071 * 300.00454 * 17 15 13 21 21 C 1.47422 * 108.70299 * 1.05914 * 12 11 10 22 22 C 1.38212 * 120.00206 * 359.84700 * 5 4 3 23 23 C 1.38214 * 119.99903 * 180.02562 * 2 1 3 24 24 C 1.50703 * 120.00023 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46642 * 269.97641 * 1 2 3 26 26 H 1.08992 * 109.47282 * 29.97268 * 1 2 3 27 27 H 1.09001 * 109.46764 * 149.97731 * 1 2 3 28 28 H 1.07997 * 119.99984 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00011 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46901 * 209.99901 * 6 5 4 31 31 H 1.08997 * 109.46581 * 329.99567 * 6 5 4 32 32 H 1.09001 * 110.71745 * 324.79127 * 10 8 7 33 33 H 1.09002 * 110.72109 * 88.05940 * 10 8 7 34 34 H 1.08991 * 109.88645 * 262.77891 * 11 10 8 35 35 H 1.09003 * 110.01212 * 141.67876 * 11 10 8 36 36 H 0.96997 * 119.99759 * 179.97438 * 16 15 13 37 37 H 1.09007 * 110.36613 * 217.03599 * 21 12 11 38 38 H 1.09001 * 110.36730 * 94.71386 * 21 12 11 39 39 H 1.08000 * 120.00360 * 180.20760 * 22 5 4 40 40 H 1.09002 * 109.47152 * 90.00127 * 24 23 2 41 41 H 1.09001 * 109.46980 * 330.00228 * 24 23 2 42 42 H 1.09004 * 109.47113 * 210.00208 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0019 6 6 5.7788 -0.0001 0.0030 7 8 6.2541 0.0009 1.3506 8 6 7.6786 0.0016 1.4645 9 1 8.1346 -0.5449 0.6389 10 6 8.1274 -0.5784 2.8318 11 6 9.4944 0.0995 3.0629 12 7 9.5186 1.3223 2.2469 13 6 10.5657 2.1999 2.1553 14 1 10.4845 3.0736 1.5256 15 6 11.7318 1.9665 2.8715 16 7 11.8306 0.9018 3.6390 17 14 13.1604 3.1634 2.7460 18 1 12.7221 4.5069 3.2021 19 1 14.2785 2.6911 3.6015 20 1 13.6161 3.2440 1.3349 21 6 8.2286 1.4475 1.5445 22 6 3.5807 -1.1970 0.0058 23 6 2.1981 -1.1970 -0.0005 24 6 1.4446 -2.5021 -0.0005 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 0.0001 30 1 6.1424 -0.8904 -0.5099 31 1 6.1424 0.8895 -0.5112 32 1 7.4231 -0.3040 3.6170 33 1 8.2389 -1.6612 2.7735 34 1 10.2971 -0.5693 2.7524 35 1 9.6110 0.3544 4.1162 36 1 12.6455 0.7385 4.1391 37 1 8.3794 1.8519 0.5435 38 1 7.5475 2.0817 2.1121 39 1 4.1207 -2.1323 0.0103 40 1 1.2625 -2.8165 -1.0282 41 1 0.4923 -2.3718 0.5137 42 1 2.0339 -3.2619 0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222853029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = -6.370240 kcal Electronic energy + Delta-G solvation = -20618.112152 eV Core-core repulsion = 17563.362149 eV Total energy + Delta-G solvation = -3054.750003 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79827 -38.22533 -35.98621 -33.73467 -32.35359 -32.02081 -29.32028 -28.51297 -27.23994 -26.84682 -24.64528 -23.98889 -22.18173 -20.33300 -20.24854 -19.90443 -16.95752 -16.60170 -16.03026 -15.91087 -15.05358 -14.64347 -14.50673 -14.34657 -14.01407 -13.65681 -13.24098 -13.10849 -13.04034 -12.70746 -12.36067 -12.23590 -12.13997 -11.93428 -11.81369 -11.54183 -11.08555 -10.94856 -10.87117 -10.82690 -10.64480 -10.17816 -10.10419 -9.76541 -9.69047 -9.05308 -8.81259 -8.57843 -8.54375 -6.81793 -5.69347 -3.03302 1.20173 1.34253 3.42030 3.45668 3.47306 3.51646 4.20712 4.53197 4.64825 4.68231 4.86279 4.96589 5.04575 5.18180 5.35116 5.36675 5.42034 5.44298 5.46466 5.46629 5.56746 5.61096 5.66273 5.67204 5.69435 5.79952 5.87358 6.05793 6.08833 6.30568 6.37583 6.49585 6.52728 6.57078 6.61081 6.71235 6.75607 6.95575 7.56979 7.64087 7.65509 7.84602 8.27591 9.23379 9.83527 10.49637 11.42379 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043259 B = 0.003029 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.102607 B = 9242.962159 C = 9641.172460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.084 4.084 6 C 0.102 3.898 7 O -0.372 6.372 8 C 0.071 3.929 9 H 0.066 0.934 10 C -0.137 4.137 11 C 0.178 3.822 12 N -0.604 5.604 13 C -0.229 4.229 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.118 3.882 22 C -0.096 4.096 23 C -0.094 4.094 24 C -0.114 4.114 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.253 0.747 37 H 0.036 0.964 38 H 0.027 0.973 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.957 -5.158 -8.544 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.117 4.117 5 C -0.084 4.084 6 C 0.025 3.975 7 O -0.291 6.291 8 C 0.013 3.987 9 H 0.084 0.916 10 C -0.175 4.175 11 C 0.054 3.946 12 N -0.332 5.332 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.205 4.205 16 N -0.571 5.571 17 Si 0.744 3.256 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.009 4.009 22 C -0.114 4.114 23 C -0.094 4.094 24 C -0.171 4.171 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.859 -5.149 -8.288 23.028 hybrid contribution 1.063 0.698 -0.213 1.290 sum -19.796 -4.451 -8.501 21.999 Atomic orbital electron populations 1.20813 0.91448 1.02617 1.02247 1.19769 0.95841 0.92742 1.00431 1.20985 0.94086 0.97402 1.01459 1.21075 0.94079 0.97788 0.98792 1.19663 0.94572 0.93357 1.00771 1.21279 0.89945 1.00746 0.85532 1.87962 1.21787 1.95033 1.24353 1.23442 0.79028 0.97716 0.98545 0.91584 1.22968 0.99724 0.99453 0.95342 1.21171 0.90273 0.87210 0.95971 1.44351 1.11409 1.25618 1.51825 1.19022 0.91397 1.02062 1.23202 0.90468 1.24818 0.98147 0.98149 0.99391 1.69950 1.27223 1.27400 1.32488 0.86172 0.81871 0.80202 0.77350 1.21151 1.21565 1.21169 1.21933 0.88944 0.94143 0.95851 1.20931 0.93334 0.97704 0.99439 1.19723 0.93577 0.94874 1.01203 1.20803 0.99996 0.94154 1.02110 0.91231 0.91676 0.91438 0.86070 0.85805 0.92833 0.92516 0.91502 0.91869 0.93383 0.93548 0.93665 0.94544 0.95502 0.85994 0.91349 0.91435 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.19 36.01 0.33 -0.52 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 4 C -0.10 -1.24 9.70 -39.58 -0.38 -1.63 16 5 C -0.08 -1.12 5.51 -104.62 -0.58 -1.69 16 6 C 0.10 1.45 5.94 36.01 0.21 1.66 16 7 O -0.37 -6.60 10.14 -35.23 -0.36 -6.95 16 8 C 0.07 1.36 3.49 -24.59 -0.09 1.28 16 9 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 10 C -0.14 -2.76 6.69 -24.90 -0.17 -2.93 16 11 C 0.18 4.50 5.38 -3.06 -0.02 4.48 16 12 N -0.60 -16.09 3.39 -170.07 -0.58 -16.67 16 13 C -0.23 -6.54 10.28 -15.06 -0.15 -6.70 16 14 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 16 N -0.92 -27.55 10.31 55.49 0.57 -26.98 16 17 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.12 2.61 6.97 -2.53 -0.02 2.59 16 22 C -0.10 -1.17 9.36 -39.58 -0.37 -1.54 16 23 C -0.09 -1.02 5.88 -104.62 -0.62 -1.63 16 24 C -0.11 -0.91 9.20 36.01 0.33 -0.58 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.07 0.43 6.70 -51.93 -0.35 0.08 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 30 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 35 H 0.05 1.28 7.50 -51.93 -0.39 0.89 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.46 6.70 -51.93 -0.35 0.12 16 42 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -31.73 341.02 -9.76 -41.49 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.91 Total: -2.58 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.61 Total: -10.81 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.01 Total: -43.65 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.36 Total: -6.95 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.73 -9.76 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222853029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.120 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds