Wall clock time and date at job start Mon Mar 30 2020 02:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38253 * 119.99921 * 2 1 4 4 C 1.38217 * 119.99821 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00016 * 359.96249 * 4 3 2 6 6 C 1.50705 * 120.00096 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47280 * 89.99378 * 6 5 4 8 8 C 1.42904 * 114.00025 * 180.02562 * 7 6 5 9 9 H 1.09007 * 110.88381 * 327.57327 * 8 7 6 10 10 C 1.55154 * 111.00601 * 203.65011 * 8 7 6 11 11 C 1.54321 * 102.94494 * 206.42077 * 10 8 7 12 12 N 1.47026 * 107.26801 * 22.19429 * 11 10 8 13 13 C 1.36932 * 125.64654 * 181.02052 * 12 11 10 14 14 H 1.08006 * 119.99949 * 180.02562 * 13 12 11 15 15 C 1.38816 * 120.00526 * 0.04411 * 13 12 11 16 16 N 1.31621 * 119.99425 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00530 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46777 * 59.99885 * 17 15 13 19 19 H 1.48495 * 109.47256 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47071 * 300.00454 * 17 15 13 21 21 C 1.47422 * 108.70299 * 1.05914 * 12 11 10 22 22 C 1.38212 * 120.00206 * 359.84700 * 5 4 3 23 23 C 1.38214 * 119.99903 * 180.02562 * 2 1 3 24 24 C 1.50703 * 120.00023 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46642 * 269.97641 * 1 2 3 26 26 H 1.08992 * 109.47282 * 29.97268 * 1 2 3 27 27 H 1.09001 * 109.46764 * 149.97731 * 1 2 3 28 28 H 1.07997 * 119.99984 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.00011 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46901 * 209.99901 * 6 5 4 31 31 H 1.08997 * 109.46581 * 329.99567 * 6 5 4 32 32 H 1.09001 * 110.71745 * 324.79127 * 10 8 7 33 33 H 1.09002 * 110.72109 * 88.05940 * 10 8 7 34 34 H 1.08991 * 109.88645 * 262.77891 * 11 10 8 35 35 H 1.09003 * 110.01212 * 141.67876 * 11 10 8 36 36 H 0.96997 * 119.99759 * 179.97438 * 16 15 13 37 37 H 1.09007 * 110.36613 * 217.03599 * 21 12 11 38 38 H 1.09001 * 110.36730 * 94.71386 * 21 12 11 39 39 H 1.08000 * 120.00360 * 180.20760 * 22 5 4 40 40 H 1.09002 * 109.47152 * 90.00127 * 24 23 2 41 41 H 1.09001 * 109.46980 * 330.00228 * 24 23 2 42 42 H 1.09004 * 109.47113 * 210.00208 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0019 6 6 5.7788 -0.0001 0.0030 7 8 6.2541 0.0009 1.3506 8 6 7.6786 0.0016 1.4645 9 1 8.1346 -0.5449 0.6389 10 6 8.1274 -0.5784 2.8318 11 6 9.4944 0.0995 3.0629 12 7 9.5186 1.3223 2.2469 13 6 10.5657 2.1999 2.1553 14 1 10.4845 3.0736 1.5256 15 6 11.7318 1.9665 2.8715 16 7 11.8306 0.9018 3.6390 17 14 13.1604 3.1634 2.7460 18 1 12.7221 4.5069 3.2021 19 1 14.2785 2.6911 3.6015 20 1 13.6161 3.2440 1.3349 21 6 8.2286 1.4475 1.5445 22 6 3.5807 -1.1970 0.0058 23 6 2.1981 -1.1970 -0.0005 24 6 1.4446 -2.5021 -0.0005 25 1 -0.3632 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1326 -0.0004 29 1 4.1205 2.1326 0.0001 30 1 6.1424 -0.8904 -0.5099 31 1 6.1424 0.8895 -0.5112 32 1 7.4231 -0.3040 3.6170 33 1 8.2389 -1.6612 2.7735 34 1 10.2971 -0.5693 2.7524 35 1 9.6110 0.3544 4.1162 36 1 12.6455 0.7385 4.1391 37 1 8.3794 1.8519 0.5435 38 1 7.5475 2.0817 2.1121 39 1 4.1207 -2.1323 0.0103 40 1 1.2625 -2.8165 -1.0282 41 1 0.4923 -2.3718 0.5137 42 1 2.0339 -3.2619 0.5130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222853029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:18 Heat of formation + Delta-G solvation = -23.357755 kcal Electronic energy + Delta-G solvation = -20618.848786 eV Core-core repulsion = 17563.362149 eV Total energy + Delta-G solvation = -3055.486637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.69833 -39.74734 -37.60296 -34.79567 -33.98751 -33.06574 -31.16822 -29.59335 -28.67097 -27.89633 -26.38225 -25.19628 -23.00654 -22.09193 -21.88230 -21.01344 -18.98575 -18.00315 -17.01304 -16.90592 -16.67995 -16.18912 -15.80319 -15.46885 -15.21567 -14.97869 -14.72362 -14.08785 -13.97452 -13.90192 -13.62917 -13.57148 -13.26928 -13.13359 -12.92282 -12.78469 -12.68120 -12.61085 -12.24840 -12.12731 -12.08341 -11.83708 -11.75101 -11.64502 -11.46596 -10.73019 -10.50419 -9.67276 -9.38999 -8.95216 -7.87289 -5.24637 0.31217 0.48139 1.45265 1.49313 1.55689 2.42571 2.54443 3.04666 3.31253 3.70685 3.78677 3.82634 3.92432 4.02613 4.07241 4.12929 4.17201 4.25360 4.37902 4.53394 4.56110 4.60870 4.70848 4.73749 4.82058 4.87375 4.90008 4.93028 4.95850 5.00348 5.04873 5.07068 5.30111 5.35979 5.41019 5.53159 5.60124 5.68557 5.70340 5.73368 6.12447 6.13868 6.30297 7.06333 7.72202 8.37173 9.23131 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043259 B = 0.003029 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.102607 B = 9242.962159 C = 9641.172460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.117 4.117 5 C -0.106 4.106 6 C 0.098 3.902 7 O -0.381 6.381 8 C 0.090 3.910 9 H 0.079 0.921 10 C -0.124 4.124 11 C 0.187 3.813 12 N -0.626 5.626 13 C -0.249 4.249 14 H 0.083 0.917 15 C -0.066 4.066 16 N -0.952 5.952 17 Si 0.984 3.016 18 H -0.277 1.277 19 H -0.292 1.292 20 H -0.274 1.274 21 C 0.115 3.885 22 C -0.109 4.109 23 C -0.101 4.101 24 C -0.113 4.113 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.021 0.979 35 H 0.011 0.989 36 H 0.249 0.751 37 H 0.046 0.954 38 H 0.020 0.980 39 H 0.129 0.871 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.792 -5.367 -9.673 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.106 4.106 6 C 0.022 3.978 7 O -0.300 6.300 8 C 0.031 3.969 9 H 0.097 0.903 10 C -0.162 4.162 11 C 0.062 3.938 12 N -0.354 5.354 13 C -0.377 4.377 14 H 0.101 0.899 15 C -0.259 4.259 16 N -0.600 5.600 17 Si 0.811 3.189 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.200 1.200 21 C -0.011 4.011 22 C -0.127 4.127 23 C -0.101 4.101 24 C -0.169 4.169 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.158 0.842 29 H 0.141 0.859 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.039 0.961 35 H 0.029 0.971 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.147 0.853 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.732 -5.352 -9.442 25.190 hybrid contribution 1.513 0.780 0.110 1.706 sum -21.219 -4.572 -9.332 23.627 Atomic orbital electron populations 1.20877 0.89146 1.03894 1.03081 1.20196 0.97619 0.92352 0.99034 1.21277 0.93661 0.98719 1.00990 1.21229 0.95041 0.97646 0.99589 1.19690 0.93977 0.94248 1.02675 1.21465 0.90854 1.01579 0.83866 1.87947 1.20312 1.94951 1.26803 1.23104 0.80187 0.95370 0.98198 0.90283 1.22800 0.96660 1.00551 0.96226 1.20919 0.92428 0.86791 0.93692 1.44660 1.12475 1.25703 1.52530 1.19445 0.92320 1.02732 1.23241 0.89917 1.25724 1.00858 1.00041 0.99249 1.70173 1.27560 1.29074 1.33220 0.85082 0.78183 0.78018 0.77607 1.20341 1.21816 1.19997 1.22067 0.87146 0.96327 0.95567 1.21129 0.94257 0.97582 0.99744 1.20107 0.93335 0.96410 1.00277 1.20859 1.00226 0.92659 1.03174 0.90454 0.90579 0.90091 0.84188 0.85852 0.91339 0.92274 0.91265 0.89220 0.96109 0.97123 0.94187 0.93600 0.96204 0.85320 0.90046 0.90096 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.19 71.24 0.65 -0.70 16 2 C -0.09 -1.73 5.88 -19.86 -0.12 -1.85 16 3 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 4 C -0.12 -2.86 9.70 22.27 0.22 -2.64 16 5 C -0.11 -2.75 5.51 -19.87 -0.11 -2.86 16 6 C 0.10 2.70 5.94 71.24 0.42 3.13 16 7 O -0.38 -13.06 10.14 -148.98 -1.51 -14.57 16 8 C 0.09 3.37 3.49 31.98 0.11 3.48 16 9 H 0.08 2.77 7.90 -2.38 -0.02 2.75 16 10 C -0.12 -4.96 6.69 31.78 0.21 -4.74 16 11 C 0.19 9.66 5.38 86.73 0.47 10.13 16 12 N -0.63 -33.88 3.39 -691.99 -2.35 -36.23 16 13 C -0.25 -14.42 10.28 84.04 0.86 -13.56 16 14 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 15 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 16 N -0.95 -58.35 10.31 21.65 0.22 -58.13 16 17 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 C 0.11 5.07 6.97 86.85 0.61 5.67 16 22 C -0.11 -2.53 9.36 22.27 0.21 -2.32 16 23 C -0.10 -2.00 5.88 -19.86 -0.12 -2.12 16 24 C -0.11 -1.50 9.20 71.24 0.66 -0.84 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 27 H 0.08 0.75 6.70 -2.39 -0.02 0.74 16 28 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 30 H 0.07 1.66 8.06 -2.39 -0.02 1.64 16 31 H 0.06 1.57 8.09 -2.39 -0.02 1.55 16 32 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.02 1.17 7.38 -2.39 -0.02 1.15 16 35 H 0.01 0.61 7.50 -2.39 -0.02 0.59 16 36 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.86 6.70 -2.39 -0.02 0.84 16 42 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 Total: -1.00 -68.94 341.02 4.12 -64.81 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.98 Total: 10.69 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 4.76 Total: -15.01 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -2.13 Total: -94.36 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.51 Total: -14.57 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -68.94 4.12 -64.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222853029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.457 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds