Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.99556 * 2 1 4 4 C 1.38212 * 119.99561 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00123 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47171 * 359.97438 * 6 5 4 8 8 C 1.42902 * 114.00186 * 180.02562 * 7 6 5 9 9 C 1.53927 * 113.73144 * 248.76467 * 8 7 6 10 10 N 1.48186 * 86.10195 * 221.95578 * 9 8 7 11 11 C 1.46898 * 111.07304 * 137.52019 * 10 9 8 12 12 C 1.50703 * 109.47132 * 70.56918 * 11 10 9 13 13 H 1.08004 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00311 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00020 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00331 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47223 * 60.00261 * 16 14 12 18 18 H 1.48499 * 109.47339 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47188 * 299.99991 * 16 14 12 20 20 C 1.47957 * 90.79871 * 24.59982 * 10 9 8 21 21 C 1.38211 * 119.99925 * 0.25121 * 5 4 3 22 22 C 1.50706 * 120.00115 * 179.73083 * 21 5 4 23 23 C 1.38212 * 120.00607 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47697 * 89.99907 * 1 2 3 25 25 H 1.09007 * 109.46618 * 210.00217 * 1 2 3 26 26 H 1.08997 * 109.47396 * 329.99306 * 1 2 3 27 27 H 1.07995 * 119.99949 * 0.02562 * 3 2 1 28 28 H 1.08009 * 119.99753 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47152 * 239.99626 * 6 5 4 30 30 H 1.09001 * 109.46980 * 119.99726 * 6 5 4 31 31 H 1.09000 * 112.93500 * 20.32926 * 8 7 6 32 32 H 1.09005 * 113.76265 * 336.23704 * 9 8 7 33 33 H 1.08998 * 113.76312 * 107.60349 * 9 8 7 34 34 H 1.09002 * 109.47506 * 190.56694 * 11 10 9 35 35 H 1.08995 * 109.47252 * 310.56779 * 11 10 9 36 36 H 0.96995 * 119.99774 * 180.02562 * 15 14 12 37 37 H 1.09002 * 113.76528 * 221.08524 * 20 10 9 38 38 H 1.09002 * 113.85644 * 89.73353 * 20 10 9 39 39 H 1.08995 * 109.47197 * 90.00000 * 22 21 5 40 40 H 1.09002 * 109.46866 * 209.99739 * 22 21 5 41 41 H 1.08996 * 109.46670 * 329.99122 * 22 21 5 42 42 H 1.08006 * 119.99275 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0002 0.0005 7 8 6.2550 1.3475 -0.0001 8 6 7.6795 1.4604 -0.0007 9 6 8.2573 2.0186 1.3123 10 7 9.1624 2.8200 0.4553 11 6 9.2847 4.1951 0.9572 12 6 10.0751 4.1931 2.2403 13 1 10.4495 3.2632 2.6425 14 6 10.3213 5.3783 2.9003 15 7 9.8667 6.5108 2.4099 16 14 11.3004 5.3757 4.4912 17 1 12.6533 4.8180 4.2388 18 1 11.4242 6.7658 4.9985 19 1 10.6014 4.5411 5.5012 20 6 8.1987 2.7483 -0.6651 21 6 3.5807 -1.1968 -0.0052 22 6 4.3342 -2.5019 -0.0114 23 6 2.1981 -1.1969 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6581 2.1327 0.0004 28 1 4.1203 2.1329 0.0001 29 1 6.1421 -0.5136 -0.8894 30 1 6.1420 -0.5135 0.8906 31 1 8.1772 0.5555 -0.3494 32 1 7.5489 2.6181 1.8841 33 1 8.7711 1.2724 1.9183 34 1 9.7971 4.8083 0.2159 35 1 8.2915 4.6039 1.1430 36 1 10.0402 7.3446 2.8740 37 1 8.6656 2.5840 -1.6363 38 1 7.4724 3.5611 -0.6746 39 1 4.5158 -2.8214 1.0147 40 1 3.7452 -3.2591 -0.5289 41 1 5.2866 -2.3690 -0.5246 42 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222853559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = 1.326696 kcal Electronic energy + Delta-G solvation = -20470.053889 eV Core-core repulsion = 17415.637651 eV Total energy + Delta-G solvation = -3054.416239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.90340 -39.17616 -36.55348 -33.92950 -32.81352 -32.05118 -29.32758 -28.29836 -27.25131 -25.59105 -24.96474 -24.35696 -22.16204 -21.37021 -20.25298 -19.26905 -16.97599 -16.39654 -16.23672 -15.47113 -15.29939 -15.07466 -14.72199 -14.32178 -14.12023 -13.75299 -13.51258 -13.22240 -13.16454 -12.95218 -12.71370 -12.19328 -12.09110 -12.03522 -11.76737 -11.69837 -11.39651 -11.12191 -11.00446 -10.85412 -10.78041 -10.62910 -10.23746 -9.64658 -9.25719 -9.15242 -8.78894 -8.47770 -8.43835 -7.80068 -6.03689 -4.05706 1.23146 1.35939 3.33522 3.37172 3.40257 3.63702 3.73858 4.42837 4.62153 4.68461 4.84768 4.89497 4.92306 5.00171 5.10715 5.17481 5.24513 5.32215 5.36083 5.38877 5.42784 5.44382 5.52489 5.63014 5.67527 5.75154 5.90099 6.04094 6.10283 6.13997 6.20048 6.36358 6.43505 6.49854 6.55261 6.60566 6.69720 6.97283 7.24702 7.48740 7.64028 7.88754 8.12307 8.42655 9.01036 9.58529 11.07611 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.003135 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.417001 B = 8928.436851 C = 9263.772061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.086 4.086 5 C -0.091 4.091 6 C 0.104 3.896 7 O -0.374 6.374 8 C 0.053 3.947 9 C 0.006 3.994 10 N -0.477 5.477 11 C 0.164 3.836 12 C -0.511 4.511 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.002 3.998 21 C -0.081 4.081 22 C -0.118 4.118 23 C -0.124 4.124 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.000 1.000 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.215 -16.397 -6.278 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.091 4.091 6 C 0.027 3.973 7 O -0.292 6.292 8 C -0.005 4.005 9 C -0.123 4.123 10 N -0.201 5.201 11 C 0.038 3.962 12 C -0.550 4.550 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.127 4.127 21 C -0.081 4.081 22 C -0.174 4.174 23 C -0.142 4.142 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.153 0.847 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.018 0.982 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.657 -16.220 -6.333 23.416 hybrid contribution -0.078 0.413 1.061 1.141 sum -15.735 -15.807 -5.272 22.918 Atomic orbital electron populations 1.20772 0.91398 1.02624 1.02142 1.19903 0.95909 0.93260 0.99882 1.21070 0.94285 0.97448 1.01764 1.21084 0.93646 0.98603 0.97034 1.19598 0.94415 0.93153 1.01977 1.21209 0.90660 0.85142 1.00279 1.87938 1.21785 1.24819 1.94702 1.24428 0.79409 0.98554 0.98156 1.24227 0.94931 0.97867 0.95308 1.68557 1.32287 1.15723 1.03569 1.20186 0.96348 0.83722 0.95981 1.21052 1.33876 0.93394 1.06639 0.92078 1.24994 0.96082 0.95442 0.98032 1.69952 1.46006 0.98018 1.39735 0.86540 0.80574 0.76909 0.83280 1.20131 1.21284 1.20237 1.24138 0.94889 0.95953 0.97717 1.19601 0.93727 0.94449 1.00346 1.20826 1.00063 0.94046 1.02474 1.20774 0.93139 0.97435 1.02833 0.91335 0.91749 0.91582 0.86133 0.84702 0.92220 0.92050 0.89397 0.90728 0.90439 0.94914 0.98172 0.92807 0.90045 0.91140 0.90982 0.91534 0.91402 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.13 -1.49 9.70 -39.58 -0.38 -1.87 16 4 C -0.09 -1.14 9.38 -39.58 -0.37 -1.51 16 5 C -0.09 -1.16 5.88 -104.62 -0.62 -1.78 16 6 C 0.10 1.31 4.90 36.01 0.18 1.48 16 7 O -0.37 -5.89 8.84 -35.23 -0.31 -6.20 16 8 C 0.05 0.86 4.48 -25.80 -0.12 0.74 16 9 C 0.01 0.12 7.32 -2.64 -0.02 0.10 16 10 N -0.48 -10.66 6.25 -239.79 -1.50 -12.15 16 11 C 0.16 4.40 4.58 -4.98 -0.02 4.38 16 12 C -0.51 -14.73 8.84 -34.44 -0.30 -15.04 16 13 H 0.06 1.74 7.80 -52.48 -0.41 1.33 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 16 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.00 0.04 7.81 -2.76 -0.02 0.02 16 21 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 22 C -0.12 -0.97 9.60 36.01 0.35 -0.62 16 23 C -0.12 -1.27 9.36 -39.58 -0.37 -1.64 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.42 8.09 -51.92 -0.42 0.00 16 26 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 27 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.14 1.93 7.01 -52.48 -0.37 1.56 16 29 H 0.06 0.66 7.48 -51.93 -0.39 0.27 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 32 H 0.07 1.61 7.79 -51.93 -0.40 1.20 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.00 0.01 7.70 -51.93 -0.40 -0.39 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.07 1.36 7.80 -51.93 -0.40 0.96 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 41 H 0.07 0.53 6.63 -51.93 -0.34 0.18 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 345.95 15.07 5.21 5.21 Total: -1.00 -31.44 345.95 -10.46 -41.89 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.91 Total: -1.54 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.67 Total: -17.77 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: -0.76 Total: -38.54 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.31 Total: -6.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.44 -10.46 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222853559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.220 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds