Wall clock time and date at job start Mon Mar 30 2020 02:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.99556 * 2 1 4 4 C 1.38212 * 119.99561 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00123 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.47171 * 359.97438 * 6 5 4 8 8 C 1.42902 * 114.00186 * 180.02562 * 7 6 5 9 9 C 1.53927 * 113.73144 * 248.76467 * 8 7 6 10 10 N 1.48186 * 86.10195 * 221.95578 * 9 8 7 11 11 C 1.46898 * 111.07304 * 137.52019 * 10 9 8 12 12 C 1.50703 * 109.47132 * 70.56918 * 11 10 9 13 13 H 1.08004 * 119.99708 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00311 * 179.97438 * 12 11 10 15 15 N 1.31523 * 120.00020 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00331 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47223 * 60.00261 * 16 14 12 18 18 H 1.48499 * 109.47339 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47188 * 299.99991 * 16 14 12 20 20 C 1.47957 * 90.79871 * 24.59982 * 10 9 8 21 21 C 1.38211 * 119.99925 * 0.25121 * 5 4 3 22 22 C 1.50706 * 120.00115 * 179.73083 * 21 5 4 23 23 C 1.38212 * 120.00607 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47697 * 89.99907 * 1 2 3 25 25 H 1.09007 * 109.46618 * 210.00217 * 1 2 3 26 26 H 1.08997 * 109.47396 * 329.99306 * 1 2 3 27 27 H 1.07995 * 119.99949 * 0.02562 * 3 2 1 28 28 H 1.08009 * 119.99753 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47152 * 239.99626 * 6 5 4 30 30 H 1.09001 * 109.46980 * 119.99726 * 6 5 4 31 31 H 1.09000 * 112.93500 * 20.32926 * 8 7 6 32 32 H 1.09005 * 113.76265 * 336.23704 * 9 8 7 33 33 H 1.08998 * 113.76312 * 107.60349 * 9 8 7 34 34 H 1.09002 * 109.47506 * 190.56694 * 11 10 9 35 35 H 1.08995 * 109.47252 * 310.56779 * 11 10 9 36 36 H 0.96995 * 119.99774 * 180.02562 * 15 14 12 37 37 H 1.09002 * 113.76528 * 221.08524 * 20 10 9 38 38 H 1.09002 * 113.85644 * 89.73353 * 20 10 9 39 39 H 1.08995 * 109.47197 * 90.00000 * 22 21 5 40 40 H 1.09002 * 109.46866 * 209.99739 * 22 21 5 41 41 H 1.08996 * 109.46670 * 329.99122 * 22 21 5 42 42 H 1.08006 * 119.99275 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0002 0.0005 7 8 6.2550 1.3475 -0.0001 8 6 7.6795 1.4604 -0.0007 9 6 8.2573 2.0186 1.3123 10 7 9.1624 2.8200 0.4553 11 6 9.2847 4.1951 0.9572 12 6 10.0751 4.1931 2.2403 13 1 10.4495 3.2632 2.6425 14 6 10.3213 5.3783 2.9003 15 7 9.8667 6.5108 2.4099 16 14 11.3004 5.3757 4.4912 17 1 12.6533 4.8180 4.2388 18 1 11.4242 6.7658 4.9985 19 1 10.6014 4.5411 5.5012 20 6 8.1987 2.7483 -0.6651 21 6 3.5807 -1.1968 -0.0052 22 6 4.3342 -2.5019 -0.0114 23 6 2.1981 -1.1969 -0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6581 2.1327 0.0004 28 1 4.1203 2.1329 0.0001 29 1 6.1421 -0.5136 -0.8894 30 1 6.1420 -0.5135 0.8906 31 1 8.1772 0.5555 -0.3494 32 1 7.5489 2.6181 1.8841 33 1 8.7711 1.2724 1.9183 34 1 9.7971 4.8083 0.2159 35 1 8.2915 4.6039 1.1430 36 1 10.0402 7.3446 2.8740 37 1 8.6656 2.5840 -1.6363 38 1 7.4724 3.5611 -0.6746 39 1 4.5158 -2.8214 1.0147 40 1 3.7452 -3.2591 -0.5289 41 1 5.2866 -2.3690 -0.5246 42 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222853559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:52 Heat of formation + Delta-G solvation = -18.272894 kcal Electronic energy + Delta-G solvation = -20470.903791 eV Core-core repulsion = 17415.637651 eV Total energy + Delta-G solvation = -3055.266141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02960 -40.44479 -37.84954 -35.07736 -34.64574 -32.92661 -31.08004 -29.34392 -27.97959 -27.28128 -26.68263 -25.33984 -23.55745 -22.75855 -21.15810 -20.72485 -18.66874 -18.07710 -17.40109 -16.70880 -16.61162 -16.33908 -16.04911 -15.60563 -15.26126 -15.05279 -14.64599 -14.32253 -14.00479 -13.97654 -13.90337 -13.69614 -13.40486 -13.32932 -12.96074 -12.82455 -12.74545 -12.65202 -12.50950 -12.19629 -12.16733 -11.85686 -11.66292 -11.47751 -11.21016 -10.67445 -10.56205 -9.67066 -9.64200 -9.28889 -8.26223 -6.37773 0.38110 0.48725 1.38007 1.42036 1.50106 2.36289 2.55231 2.78069 3.06601 3.27172 3.52695 3.80944 3.91323 4.00988 4.08102 4.12549 4.29444 4.33070 4.47235 4.50555 4.56051 4.56496 4.69016 4.69792 4.75857 4.82827 4.86805 4.88007 4.92921 4.94782 4.96434 5.08677 5.10376 5.26719 5.36102 5.47406 5.53684 5.68919 5.70870 5.72780 6.06517 6.13375 6.30165 6.34907 6.76612 7.32185 8.85709 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025743 B = 0.003135 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.417001 B = 8928.436851 C = 9263.772061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.112 4.112 5 C -0.112 4.112 6 C 0.101 3.899 7 O -0.390 6.390 8 C 0.082 3.918 9 C -0.001 4.001 10 N -0.488 5.488 11 C 0.179 3.821 12 C -0.532 4.532 13 H 0.062 0.938 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.003 4.003 21 C -0.083 4.083 22 C -0.117 4.117 23 C -0.128 4.128 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.004 0.996 35 H -0.030 1.030 36 H 0.266 0.734 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.662 -19.224 -5.980 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.160 4.160 4 C -0.130 4.130 5 C -0.112 4.112 6 C 0.025 3.975 7 O -0.309 6.309 8 C 0.024 3.976 9 C -0.130 4.130 10 N -0.212 5.212 11 C 0.052 3.948 12 C -0.570 4.570 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.191 1.191 20 C -0.132 4.132 21 C -0.084 4.084 22 C -0.173 4.173 23 C -0.145 4.145 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.022 0.978 35 H -0.013 1.013 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.116 -19.068 -6.048 25.688 hybrid contribution -0.050 1.260 0.915 1.559 sum -16.166 -17.808 -5.132 24.592 Atomic orbital electron populations 1.20822 0.89252 1.03582 1.03100 1.20279 0.97569 0.92835 0.98631 1.21241 0.93829 0.98679 1.02280 1.21051 0.94584 0.98231 0.99106 1.19742 0.94551 0.93684 1.03259 1.21426 0.90802 0.83542 1.01719 1.87939 1.21065 1.27298 1.94553 1.24096 0.80216 0.98557 0.94717 1.24261 0.94435 0.97540 0.96793 1.68449 1.34470 1.12875 1.05401 1.19829 0.94002 0.85998 0.94958 1.21378 1.34328 0.93707 1.07547 0.91972 1.25992 0.97031 0.94862 1.01899 1.70087 1.47120 0.98762 1.41465 0.85374 0.79107 0.77324 0.78463 1.19041 1.20579 1.19147 1.24220 0.94120 0.96969 0.97852 1.19935 0.94320 0.94877 0.99219 1.20892 1.00239 0.92903 1.03287 1.21163 0.93152 0.98422 1.01811 0.90255 0.90223 0.91246 0.85427 0.87035 0.90070 0.91061 0.85887 0.93454 0.89124 0.97797 1.01264 0.92509 0.87512 0.92835 0.90209 0.89750 0.90924 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.23 0.71 -0.73 16 2 C -0.09 -1.82 5.88 -19.87 -0.12 -1.93 16 3 C -0.14 -3.35 9.70 22.27 0.22 -3.13 16 4 C -0.11 -3.08 9.38 22.27 0.21 -2.87 16 5 C -0.11 -2.79 5.88 -19.87 -0.12 -2.91 16 6 C 0.10 2.40 4.90 71.24 0.35 2.75 16 7 O -0.39 -12.19 8.84 -148.98 -1.32 -13.51 16 8 C 0.08 2.61 4.48 31.24 0.14 2.75 16 9 C 0.00 -0.04 7.32 86.36 0.63 0.59 16 10 N -0.49 -22.21 6.25 -915.76 -5.72 -27.93 16 11 C 0.18 10.09 4.58 85.56 0.39 10.49 16 12 C -0.53 -31.38 8.84 25.60 0.23 -31.16 16 13 H 0.06 3.57 7.80 -2.91 -0.02 3.55 16 14 C 0.00 0.02 5.46 84.65 0.46 0.49 16 15 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 16 Si 0.97 45.23 29.54 68.60 2.03 47.26 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 C 0.00 -0.10 7.81 86.41 0.67 0.57 16 21 C -0.08 -1.66 5.88 -19.87 -0.12 -1.78 16 22 C -0.12 -1.56 9.60 71.24 0.68 -0.88 16 23 C -0.13 -2.33 9.36 22.27 0.21 -2.12 16 24 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.80 8.09 -2.38 -0.02 0.78 16 26 H 0.07 0.85 8.09 -2.39 -0.02 0.84 16 27 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 28 H 0.11 3.48 7.01 -2.91 -0.02 3.46 16 29 H 0.08 1.58 7.48 -2.39 -0.02 1.56 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.12 3.10 7.89 -2.39 -0.02 3.08 16 32 H 0.05 2.14 7.79 -2.38 -0.02 2.12 16 33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H -0.03 -1.85 7.70 -2.39 -0.02 -1.87 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 38 H 0.05 2.18 7.80 -2.39 -0.02 2.16 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 41 H 0.07 0.90 6.63 -2.39 -0.02 0.89 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -70.05 345.95 0.80 -69.25 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.98 Total: 12.48 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 4.56 Total: -29.88 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -5.44 Total: -85.59 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.32 Total: -13.51 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.05 0.80 -69.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222853559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.977 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds