Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38252 * 119.99944 * 2 1 4 4 C 1.38207 * 119.99943 * 179.78439 * 3 2 1 5 5 C 1.38261 * 119.99964 * 0.42817 * 4 3 2 6 6 C 1.50708 * 119.99730 * 179.80734 * 5 4 3 7 7 O 1.42896 * 109.47409 * 359.72325 * 6 5 4 8 8 C 1.42902 * 114.00033 * 180.02562 * 7 6 5 9 9 H 1.09004 * 110.88200 * 32.42912 * 8 7 6 10 10 C 1.55150 * 111.00287 * 156.35097 * 8 7 6 11 11 C 1.54337 * 103.02027 * 153.38354 * 10 8 7 12 12 N 1.47019 * 107.26147 * 338.13566 * 11 10 8 13 13 C 1.36935 * 125.64724 * 178.85267 * 12 11 10 14 14 H 1.08000 * 120.00518 * 179.42288 * 13 12 11 15 15 C 1.38817 * 119.99990 * 359.68939 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46860 * 120.00310 * 17 15 13 20 20 H 1.48500 * 109.47264 * 240.00123 * 17 15 13 21 21 C 1.47426 * 108.70639 * 358.58796 * 12 11 10 22 22 C 1.38215 * 120.00080 * 359.53031 * 5 4 3 23 23 C 1.50693 * 119.99916 * 180.25400 * 22 5 4 24 24 C 1.38213 * 120.00058 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47499 * 270.01935 * 1 2 3 26 26 H 1.09002 * 109.47354 * 30.02632 * 1 2 3 27 27 H 1.09002 * 109.47224 * 150.01936 * 1 2 3 28 28 H 1.08006 * 120.00119 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00254 * 180.23368 * 4 3 2 30 30 H 1.09000 * 109.46625 * 239.72037 * 6 5 4 31 31 H 1.09001 * 109.46658 * 119.72688 * 6 5 4 32 32 H 1.09007 * 110.72187 * 271.93659 * 10 8 7 33 33 H 1.09003 * 110.72397 * 35.03173 * 10 8 7 34 34 H 1.09000 * 109.99057 * 218.66460 * 11 10 8 35 35 H 1.08997 * 109.78177 * 97.49092 * 11 10 8 36 36 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.36316 * 143.19145 * 21 12 11 38 38 H 1.08994 * 110.36480 * 265.51515 * 21 12 11 39 39 H 1.09011 * 109.46894 * 90.00327 * 23 22 5 40 40 H 1.09004 * 109.47058 * 210.00090 * 23 22 5 41 41 H 1.08998 * 109.47583 * 330.00288 * 23 22 5 42 42 H 1.08003 * 119.99667 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 0.0045 5 6 4.2716 -0.0001 0.0001 6 6 5.7787 0.0000 0.0006 7 8 6.2550 1.3473 -0.0005 8 6 7.6796 1.4601 -0.0007 9 1 8.1347 0.6335 -0.5462 10 6 8.1291 2.8262 -0.5828 11 6 9.4945 3.0615 0.0971 12 7 9.5207 2.2431 1.3181 13 6 10.5681 2.1519 2.1954 14 1 10.4852 1.5271 3.0725 15 6 11.7346 2.8669 1.9605 16 7 11.8336 3.6328 0.8947 17 14 13.1631 2.7430 3.1577 18 1 12.8017 1.8235 4.2663 19 1 14.3583 2.2182 2.4495 20 1 13.4654 4.0885 3.7086 21 6 8.2302 1.5417 1.4449 22 6 3.5806 -1.1971 0.0009 23 6 4.3341 -2.5021 0.0019 24 6 2.1981 -1.1970 0.0005 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1326 0.0083 30 1 6.1423 -0.5147 -0.8888 31 1 6.1417 -0.5130 0.8912 32 1 8.2401 2.7664 -1.6655 33 1 7.4238 3.6119 -0.3117 34 1 9.6061 4.1148 0.3544 35 1 10.2978 2.7543 -0.5724 36 1 12.6485 4.1326 0.7307 37 1 8.3805 0.5412 1.8506 38 1 7.5499 2.1106 2.0785 39 1 4.5157 -2.8160 1.0299 40 1 3.7450 -3.2621 -0.5114 41 1 5.2865 -2.3721 -0.5120 42 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222853711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = -7.705998 kcal Electronic energy + Delta-G solvation = -20780.376182 eV Core-core repulsion = 17725.568256 eV Total energy + Delta-G solvation = -3054.807926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.79724 -38.20934 -35.97256 -33.90240 -32.34486 -31.82256 -29.33420 -28.45792 -27.27798 -26.86112 -24.64477 -24.09347 -22.00941 -20.33368 -20.19197 -19.93858 -17.00842 -16.71051 -16.07847 -15.42456 -15.07219 -14.72838 -14.57835 -14.21827 -13.94274 -13.66331 -13.33201 -13.19476 -13.11725 -12.68948 -12.39377 -12.25985 -12.13444 -11.93746 -11.76779 -11.48569 -11.03465 -10.97867 -10.89395 -10.84835 -10.64490 -10.18985 -10.06440 -9.78117 -9.71297 -9.17243 -8.74898 -8.59845 -8.38319 -6.83100 -5.70872 -3.04776 1.27632 1.39867 3.40325 3.45582 3.48304 3.68082 3.85680 4.51583 4.66358 4.74200 4.93963 4.97728 5.16420 5.20571 5.36636 5.37512 5.39813 5.45259 5.47791 5.52754 5.59988 5.61845 5.66374 5.73123 5.77400 5.80633 5.87703 6.08427 6.12231 6.26812 6.42629 6.46983 6.54480 6.56412 6.62776 6.70552 6.77767 7.01344 7.56326 7.62465 7.63416 7.83372 8.25925 9.22105 9.82182 10.47949 11.40955 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.003197 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.163578 B = 8756.746927 C = 9050.609468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.086 4.086 5 C -0.088 4.088 6 C 0.104 3.896 7 O -0.376 6.376 8 C 0.073 3.927 9 H 0.067 0.933 10 C -0.137 4.137 11 C 0.179 3.821 12 N -0.604 5.604 13 C -0.227 4.227 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.922 5.922 17 Si 0.913 3.087 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.118 3.882 22 C -0.081 4.081 23 C -0.118 4.118 24 C -0.124 4.124 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.135 0.865 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.252 0.748 37 H 0.037 0.963 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.613 -9.261 -4.162 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.104 4.104 5 C -0.088 4.088 6 C 0.027 3.973 7 O -0.295 6.295 8 C 0.015 3.985 9 H 0.085 0.915 10 C -0.175 4.175 11 C 0.054 3.946 12 N -0.332 5.332 13 C -0.355 4.355 14 H 0.096 0.904 15 C -0.205 4.205 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.217 1.217 21 C -0.009 4.009 22 C -0.081 4.081 23 C -0.175 4.175 24 C -0.142 4.142 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.522 -9.019 -4.142 21.900 hybrid contribution 0.967 -0.188 0.629 1.169 sum -18.555 -9.207 -3.512 21.009 Atomic orbital electron populations 1.20765 0.91449 1.02522 1.02139 1.19885 0.95857 0.93281 1.00085 1.21045 0.94272 0.97370 1.01970 1.21074 0.93576 0.98617 0.97157 1.19626 0.94494 0.93127 1.01601 1.21181 0.90425 0.85306 1.00383 1.87831 1.21985 1.24579 1.95098 1.23420 0.78779 0.98606 0.97737 0.91546 1.22972 0.99770 0.95278 0.99482 1.21170 0.90317 0.95872 0.87250 1.44369 1.11369 1.51725 1.25751 1.19114 0.91261 1.23306 1.01860 0.90361 1.24820 0.98169 0.99400 0.98160 1.69967 1.27047 1.32628 1.27364 0.86026 0.82339 0.77284 0.80004 1.20500 1.21740 1.21718 1.21932 0.88939 0.95910 0.94097 1.19611 0.93708 0.94508 1.00245 1.20833 1.00125 0.93999 1.02530 1.20770 0.93138 0.97420 1.02838 0.91351 0.91659 0.91791 0.86226 0.84701 0.92296 0.92037 0.91846 0.91520 0.93602 0.93309 0.93765 0.94518 0.95487 0.90944 0.91559 0.91320 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.97 5.88 -104.63 -0.62 -1.58 16 3 C -0.13 -1.50 9.70 -39.59 -0.38 -1.88 16 4 C -0.09 -1.17 9.38 -39.58 -0.37 -1.54 16 5 C -0.09 -1.19 5.88 -104.62 -0.62 -1.80 16 6 C 0.10 1.45 4.93 36.01 0.18 1.63 16 7 O -0.38 -6.37 8.63 -35.23 -0.30 -6.67 16 8 C 0.07 1.36 3.49 -24.59 -0.09 1.28 16 9 H 0.07 1.20 7.90 -51.93 -0.41 0.78 16 10 C -0.14 -2.70 6.68 -24.89 -0.17 -2.86 16 11 C 0.18 4.44 5.38 -3.06 -0.02 4.43 16 12 N -0.60 -15.92 3.39 -170.07 -0.58 -16.49 16 13 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 14 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.38 10.31 55.49 0.57 -26.81 16 17 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 C 0.12 2.57 6.97 -2.53 -0.02 2.56 16 22 C -0.08 -0.94 5.88 -104.63 -0.62 -1.55 16 23 C -0.12 -1.08 9.60 36.00 0.35 -0.74 16 24 C -0.12 -1.32 9.36 -39.59 -0.37 -1.69 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 28 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 29 H 0.14 1.92 7.01 -52.49 -0.37 1.55 16 30 H 0.06 0.76 7.46 -51.93 -0.39 0.37 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 35 H 0.05 1.32 7.37 -51.93 -0.38 0.93 16 36 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.07 0.62 6.64 -51.93 -0.34 0.28 16 42 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -31.13 339.51 -9.73 -40.86 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.89 Total: -2.05 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.62 Total: -11.23 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.00 Total: -43.30 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.30 Total: -6.67 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.13 -9.73 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222853711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.158 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds