Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38252 * 119.99944 * 2 1 4 4 C 1.38207 * 119.99943 * 179.78439 * 3 2 1 5 5 C 1.38261 * 119.99964 * 0.42817 * 4 3 2 6 6 C 1.50708 * 119.99730 * 179.80734 * 5 4 3 7 7 O 1.42896 * 109.47409 * 359.72325 * 6 5 4 8 8 C 1.42902 * 114.00033 * 180.02562 * 7 6 5 9 9 H 1.09004 * 110.88200 * 32.42912 * 8 7 6 10 10 C 1.55150 * 111.00287 * 156.35097 * 8 7 6 11 11 C 1.54337 * 103.02027 * 153.38354 * 10 8 7 12 12 N 1.47019 * 107.26147 * 338.13566 * 11 10 8 13 13 C 1.36935 * 125.64724 * 178.85267 * 12 11 10 14 14 H 1.08000 * 120.00518 * 179.42288 * 13 12 11 15 15 C 1.38817 * 119.99990 * 359.68939 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47361 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46860 * 120.00310 * 17 15 13 20 20 H 1.48500 * 109.47264 * 240.00123 * 17 15 13 21 21 C 1.47426 * 108.70639 * 358.58796 * 12 11 10 22 22 C 1.38215 * 120.00080 * 359.53031 * 5 4 3 23 23 C 1.50693 * 119.99916 * 180.25400 * 22 5 4 24 24 C 1.38213 * 120.00058 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47499 * 270.01935 * 1 2 3 26 26 H 1.09002 * 109.47354 * 30.02632 * 1 2 3 27 27 H 1.09002 * 109.47224 * 150.01936 * 1 2 3 28 28 H 1.08006 * 120.00119 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.00254 * 180.23368 * 4 3 2 30 30 H 1.09000 * 109.46625 * 239.72037 * 6 5 4 31 31 H 1.09001 * 109.46658 * 119.72688 * 6 5 4 32 32 H 1.09007 * 110.72187 * 271.93659 * 10 8 7 33 33 H 1.09003 * 110.72397 * 35.03173 * 10 8 7 34 34 H 1.09000 * 109.99057 * 218.66460 * 11 10 8 35 35 H 1.08997 * 109.78177 * 97.49092 * 11 10 8 36 36 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 37 37 H 1.09000 * 110.36316 * 143.19145 * 21 12 11 38 38 H 1.08994 * 110.36480 * 265.51515 * 21 12 11 39 39 H 1.09011 * 109.46894 * 90.00327 * 23 22 5 40 40 H 1.09004 * 109.47058 * 210.00090 * 23 22 5 41 41 H 1.08998 * 109.47583 * 330.00288 * 23 22 5 42 42 H 1.08003 * 119.99667 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 0.0045 5 6 4.2716 -0.0001 0.0001 6 6 5.7787 0.0000 0.0006 7 8 6.2550 1.3473 -0.0005 8 6 7.6796 1.4601 -0.0007 9 1 8.1347 0.6335 -0.5462 10 6 8.1291 2.8262 -0.5828 11 6 9.4945 3.0615 0.0971 12 7 9.5207 2.2431 1.3181 13 6 10.5681 2.1519 2.1954 14 1 10.4852 1.5271 3.0725 15 6 11.7346 2.8669 1.9605 16 7 11.8336 3.6328 0.8947 17 14 13.1631 2.7430 3.1577 18 1 12.8017 1.8235 4.2663 19 1 14.3583 2.2182 2.4495 20 1 13.4654 4.0885 3.7086 21 6 8.2302 1.5417 1.4449 22 6 3.5806 -1.1971 0.0009 23 6 4.3341 -2.5021 0.0019 24 6 2.1981 -1.1970 0.0005 25 1 -0.3634 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1326 0.0083 30 1 6.1423 -0.5147 -0.8888 31 1 6.1417 -0.5130 0.8912 32 1 8.2401 2.7664 -1.6655 33 1 7.4238 3.6119 -0.3117 34 1 9.6061 4.1148 0.3544 35 1 10.2978 2.7543 -0.5724 36 1 12.6485 4.1326 0.7307 37 1 8.3805 0.5412 1.8506 38 1 7.5499 2.1106 2.0785 39 1 4.5157 -2.8160 1.0299 40 1 3.7450 -3.2621 -0.5114 41 1 5.2865 -2.3721 -0.5120 42 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222853711.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = -23.982464 kcal Electronic energy + Delta-G solvation = -20781.081982 eV Core-core repulsion = 17725.568256 eV Total energy + Delta-G solvation = -3055.513726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73985 -39.70129 -37.57327 -34.85740 -34.11511 -32.87126 -31.16033 -29.57480 -28.64063 -27.94501 -26.38199 -25.28492 -22.96303 -22.05121 -21.81872 -20.96953 -18.99384 -18.03621 -17.16352 -16.77167 -16.53011 -16.12495 -15.84004 -15.57739 -15.04246 -14.88144 -14.69390 -14.12133 -14.04921 -13.97234 -13.84353 -13.60172 -13.35305 -13.08525 -12.90558 -12.80858 -12.77746 -12.49375 -12.20136 -12.11606 -11.99399 -11.82244 -11.80896 -11.64839 -11.42877 -10.74902 -10.60007 -9.62038 -9.27537 -8.95064 -7.87638 -5.24773 0.39918 0.51241 1.45620 1.47039 1.57552 2.42533 2.60018 2.80239 3.31174 3.70408 3.78270 3.88909 3.93220 4.03714 4.09910 4.12690 4.17456 4.34104 4.47449 4.50016 4.51290 4.61660 4.69719 4.73657 4.82387 4.87739 4.90728 4.95136 4.97313 5.01727 5.04101 5.09970 5.29489 5.36670 5.41694 5.55249 5.60494 5.70212 5.72254 5.73158 6.13569 6.15872 6.32989 7.06523 7.72201 8.36880 9.23099 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036874 B = 0.003197 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.163578 B = 8756.746927 C = 9050.609468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.111 4.111 6 C 0.101 3.899 7 O -0.381 6.381 8 C 0.092 3.908 9 H 0.080 0.920 10 C -0.124 4.124 11 C 0.187 3.813 12 N -0.626 5.626 13 C -0.245 4.245 14 H 0.083 0.917 15 C -0.066 4.066 16 N -0.951 5.951 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.292 1.292 21 C 0.115 3.885 22 C -0.085 4.085 23 C -0.118 4.118 24 C -0.128 4.128 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.010 0.990 35 H 0.021 0.979 36 H 0.248 0.752 37 H 0.046 0.954 38 H 0.020 0.980 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.310 -11.161 -4.108 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.157 4.157 4 C -0.126 4.126 5 C -0.111 4.111 6 C 0.026 3.974 7 O -0.300 6.300 8 C 0.033 3.967 9 H 0.098 0.902 10 C -0.162 4.162 11 C 0.062 3.938 12 N -0.353 5.353 13 C -0.374 4.374 14 H 0.101 0.899 15 C -0.259 4.259 16 N -0.600 5.600 17 Si 0.810 3.190 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.219 1.219 21 C -0.011 4.011 22 C -0.085 4.085 23 C -0.175 4.175 24 C -0.146 4.146 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.038 0.962 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.255 -10.941 -4.082 24.252 hybrid contribution 1.377 0.378 0.630 1.561 sum -19.878 -10.563 -3.452 22.773 Atomic orbital electron populations 1.20821 0.89180 1.03673 1.03036 1.20286 0.97591 0.92836 0.98583 1.21253 0.93706 0.98698 1.02033 1.21077 0.94593 0.98161 0.98800 1.19688 0.94033 0.93963 1.03433 1.21347 0.91172 0.83757 1.01165 1.87833 1.20393 1.26745 1.94989 1.23078 0.79992 0.98270 0.95323 0.90235 1.22799 0.96707 0.96234 1.00496 1.20916 0.92498 0.93594 0.86814 1.44673 1.12429 1.52422 1.25821 1.19507 0.92175 1.23259 1.02471 0.89926 1.25712 1.00857 0.99305 1.00037 1.70182 1.27437 1.33378 1.29026 0.84952 0.78707 0.77185 0.78113 1.18951 1.21577 1.21872 1.22065 0.87121 0.95589 0.96324 1.19904 0.94418 0.94751 0.99455 1.20888 1.00141 0.93262 1.03163 1.21138 0.92952 0.98558 1.01917 0.90442 0.90923 0.90311 0.84927 0.86371 0.90886 0.91816 0.89301 0.91095 0.97186 0.96092 0.94218 0.93604 0.96234 0.90360 0.89661 0.91401 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.65 16 2 C -0.09 -1.78 5.88 -19.87 -0.12 -1.89 16 3 C -0.14 -3.10 9.70 22.27 0.22 -2.89 16 4 C -0.11 -2.91 9.38 22.27 0.21 -2.70 16 5 C -0.11 -2.88 5.88 -19.86 -0.12 -3.00 16 6 C 0.10 2.73 4.93 71.24 0.35 3.08 16 7 O -0.38 -12.59 8.63 -148.98 -1.29 -13.87 16 8 C 0.09 3.36 3.49 31.98 0.11 3.48 16 9 H 0.08 2.73 7.90 -2.39 -0.02 2.71 16 10 C -0.12 -4.86 6.68 31.79 0.21 -4.65 16 11 C 0.19 9.57 5.38 86.73 0.47 10.03 16 12 N -0.63 -33.54 3.39 -691.98 -2.35 -35.88 16 13 C -0.25 -14.13 10.28 84.04 0.86 -13.27 16 14 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 15 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 16 N -0.95 -58.08 10.31 21.65 0.22 -57.86 16 17 Si 0.98 46.28 29.55 68.60 2.03 48.31 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 C 0.11 5.00 6.97 86.85 0.61 5.61 16 22 C -0.09 -1.81 5.88 -19.87 -0.12 -1.93 16 23 C -0.12 -1.88 9.60 71.23 0.68 -1.19 16 24 C -0.13 -2.40 9.36 22.27 0.21 -2.19 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 27 H 0.08 0.75 8.09 -2.39 -0.02 0.74 16 28 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.12 3.45 7.01 -2.91 -0.02 3.43 16 30 H 0.07 1.74 7.46 -2.39 -0.02 1.73 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 33 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.01 0.57 7.52 -2.39 -0.02 0.55 16 35 H 0.02 1.17 7.37 -2.39 -0.02 1.15 16 36 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 41 H 0.07 1.08 6.64 -2.39 -0.02 1.07 16 42 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -68.04 339.51 4.35 -63.69 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.98 Total: 11.14 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 4.76 Total: -15.53 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -2.13 Total: -93.74 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.29 Total: -13.87 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -68.04 4.35 -63.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222853711.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.708 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds