Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.00203 * 2 1 4 4 C 1.38213 * 119.99901 * 179.78520 * 3 2 1 5 5 C 1.38256 * 120.00197 * 0.42252 * 4 3 2 6 6 C 1.50700 * 119.99989 * 179.80738 * 5 4 3 7 7 O 1.42898 * 109.47251 * 359.72507 * 6 5 4 8 8 C 1.42895 * 114.00038 * 179.97438 * 7 6 5 9 9 H 1.08996 * 110.64095 * 328.31055 * 8 7 6 10 10 C 1.55163 * 110.87026 * 205.06585 * 8 7 6 11 11 C 1.55140 * 101.48282 * 205.89618 * 10 8 7 12 12 N 1.47425 * 104.72236 * 37.29725 * 11 10 8 13 13 C 1.36933 * 125.64884 * 155.81526 * 12 11 10 14 14 H 1.08003 * 119.99721 * 193.32768 * 13 12 11 15 15 C 1.38816 * 119.99961 * 13.32323 * 13 12 11 16 16 N 1.31616 * 119.99775 * 27.26821 * 15 13 12 17 17 Si 1.86796 * 119.99890 * 207.26642 * 15 13 12 18 18 H 1.48502 * 109.47389 * 60.00434 * 17 15 13 19 19 H 1.48499 * 109.47223 * 300.00034 * 17 15 13 20 20 H 1.48503 * 109.47024 * 180.02562 * 17 15 13 21 21 C 1.47029 * 108.70123 * 335.55406 * 12 11 10 22 22 C 1.38214 * 119.99694 * 359.53432 * 5 4 3 23 23 C 1.50703 * 119.99754 * 180.25232 * 22 5 4 24 24 C 1.38223 * 120.00238 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47466 * 270.02523 * 1 2 3 26 26 H 1.09004 * 109.46971 * 30.02358 * 1 2 3 27 27 H 1.09004 * 109.47108 * 150.02121 * 1 2 3 28 28 H 1.07997 * 119.99566 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99717 * 180.22621 * 4 3 2 30 30 H 1.09000 * 109.47139 * 239.72574 * 6 5 4 31 31 H 1.09003 * 109.47144 * 119.72630 * 6 5 4 32 32 H 1.08998 * 111.00445 * 324.13396 * 10 8 7 33 33 H 1.08992 * 111.00651 * 87.99364 * 10 8 7 34 34 H 1.08995 * 110.49999 * 278.45345 * 11 10 8 35 35 H 1.08999 * 110.33731 * 156.05932 * 11 10 8 36 36 H 0.97006 * 120.00147 * 5.85176 * 16 15 13 37 37 H 1.08996 * 109.88404 * 120.70446 * 21 12 11 38 38 H 1.08999 * 109.87400 * 241.87250 * 21 12 11 39 39 H 1.09003 * 109.47058 * 89.99621 * 23 22 5 40 40 H 1.08994 * 109.47228 * 209.99750 * 23 22 5 41 41 H 1.08999 * 109.47185 * 330.00641 * 23 22 5 42 42 H 1.08003 * 119.99398 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0045 5 6 4.2717 -0.0001 0.0001 6 6 5.7787 -0.0001 0.0007 7 8 6.2550 1.3472 -0.0005 8 6 7.6795 1.4600 0.0004 9 1 8.1307 0.6257 0.5375 10 6 8.1264 2.8135 0.6135 11 6 9.5026 3.0233 -0.0713 12 7 9.3193 2.5166 -1.4436 13 6 10.0534 2.8910 -2.5372 14 1 9.7134 2.6339 -3.5296 15 6 11.2346 3.6009 -2.3704 16 7 11.9311 3.4682 -1.2616 17 14 11.8353 4.7446 -3.7197 18 1 10.8165 5.7964 -3.9672 19 1 12.0569 3.9672 -4.9654 20 1 13.1104 5.3792 -3.2994 21 6 8.2220 1.5381 -1.4422 22 6 3.5805 -1.1970 0.0010 23 6 4.3341 -2.5021 0.0021 24 6 2.1981 -1.1970 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6582 2.1326 -0.0004 29 1 4.1204 2.1326 0.0082 30 1 6.1423 -0.5148 -0.8887 31 1 6.1417 -0.5131 0.8913 32 1 7.4302 3.6101 0.3512 33 1 8.2382 2.7347 1.6948 34 1 10.2760 2.4533 0.4434 35 1 9.7593 4.0825 -0.0892 36 1 11.6659 2.8125 -0.5978 37 1 7.4322 1.8658 -2.1180 38 1 8.5957 0.5618 -1.7510 39 1 4.5158 -2.8160 1.0300 40 1 3.7450 -3.2621 -0.5111 41 1 5.2865 -2.3722 -0.5117 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222853715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = -27.619668 kcal Electronic energy + Delta-G solvation = -20831.966493 eV Core-core repulsion = 17776.295046 eV Total energy + Delta-G solvation = -3055.671447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80344 -39.87641 -37.78107 -34.95582 -34.24972 -32.90497 -31.12706 -29.68726 -28.68218 -27.97177 -26.32409 -25.33333 -23.01140 -22.16690 -21.89510 -21.00808 -19.68675 -18.15212 -17.33251 -16.75555 -16.35961 -16.08855 -15.76874 -15.62336 -15.30866 -15.13654 -14.76689 -14.65986 -14.06000 -14.01800 -13.95817 -13.47444 -13.40612 -13.07226 -12.83825 -12.75761 -12.66576 -12.53290 -12.43514 -12.25587 -11.90495 -11.87113 -11.73669 -11.61998 -11.55674 -10.76632 -10.54514 -9.65512 -9.31413 -9.09776 -8.38041 -5.37413 0.36260 0.47692 1.55773 1.64293 1.83714 2.43780 2.64404 2.76587 3.14346 3.50264 3.64243 3.80185 3.87433 3.89949 4.01657 4.06917 4.10251 4.29540 4.35799 4.38453 4.46344 4.48487 4.58505 4.67575 4.79123 4.79755 4.84115 4.85583 4.88626 4.91741 4.94506 5.01345 5.07150 5.21895 5.26036 5.33491 5.51598 5.58552 5.67593 5.69786 6.11669 6.23431 6.26682 6.84428 7.64927 8.21316 8.95527 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032712 B = 0.003264 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.740796 B = 8577.438349 C = 8766.138786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.101 3.899 7 O -0.380 6.380 8 C 0.095 3.905 9 H 0.087 0.913 10 C -0.114 4.114 11 C 0.147 3.853 12 N -0.626 5.626 13 C -0.353 4.353 14 H 0.059 0.941 15 C -0.077 4.077 16 N -0.945 5.945 17 Si 1.118 2.882 18 H -0.282 1.282 19 H -0.274 1.274 20 H -0.287 1.287 21 C 0.114 3.886 22 C -0.085 4.085 23 C -0.118 4.118 24 C -0.128 4.128 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.016 0.984 35 H 0.027 0.973 36 H 0.258 0.742 37 H 0.024 0.976 38 H 0.020 0.980 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.660 -10.727 5.719 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.157 4.157 4 C -0.127 4.127 5 C -0.112 4.112 6 C 0.025 3.975 7 O -0.299 6.299 8 C 0.036 3.964 9 H 0.105 0.895 10 C -0.152 4.152 11 C 0.022 3.978 12 N -0.355 5.355 13 C -0.481 4.481 14 H 0.077 0.923 15 C -0.272 4.272 16 N -0.588 5.588 17 Si 0.941 3.059 18 H -0.208 1.208 19 H -0.199 1.199 20 H -0.213 1.213 21 C -0.012 4.012 22 C -0.085 4.085 23 C -0.174 4.174 24 C -0.145 4.145 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.038 0.962 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.595 -9.466 5.222 23.260 hybrid contribution -0.522 -1.163 0.214 1.293 sum -21.117 -10.629 5.437 24.258 Atomic orbital electron populations 1.20825 0.89124 1.03634 1.03142 1.20296 0.97629 0.92806 0.98474 1.21256 0.93685 0.98740 1.02041 1.21064 0.94625 0.98108 0.98855 1.19672 0.93985 0.93984 1.03587 1.21369 0.91289 0.83631 1.01191 1.87867 1.20220 1.26892 1.94930 1.22919 0.80504 0.98716 0.94210 0.89534 1.22834 0.95638 0.96326 1.00415 1.21532 0.94618 0.96728 0.84917 1.44739 1.38359 1.46849 1.05517 1.20047 1.04754 1.37042 0.86225 0.92321 1.27200 0.92666 1.03057 1.04293 1.70900 1.38201 1.37770 1.11976 0.82829 0.75485 0.75002 0.72541 1.20796 1.19940 1.21298 1.21869 0.90478 0.91798 0.97024 1.19906 0.94438 0.94733 0.99415 1.20890 1.00002 0.93214 1.03340 1.21147 0.92939 0.98582 1.01862 0.90203 0.91026 0.90346 0.84942 0.86525 0.92024 0.90537 0.90959 0.88013 0.96585 0.95464 0.93165 0.95754 0.96190 0.89858 0.89785 0.91706 0.83664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.23 0.71 -0.66 16 2 C -0.09 -1.76 5.88 -19.87 -0.12 -1.88 16 3 C -0.14 -3.14 9.70 22.27 0.22 -2.92 16 4 C -0.11 -2.94 9.38 22.27 0.21 -2.73 16 5 C -0.11 -2.92 5.88 -19.87 -0.12 -3.03 16 6 C 0.10 2.70 4.92 71.24 0.35 3.05 16 7 O -0.38 -12.53 8.56 -148.98 -1.27 -13.81 16 8 C 0.09 3.39 3.39 31.78 0.11 3.49 16 9 H 0.09 2.74 7.88 -2.39 -0.02 2.73 16 10 C -0.11 -4.25 6.83 32.07 0.22 -4.03 16 11 C 0.15 7.19 5.22 86.94 0.45 7.64 16 12 N -0.63 -33.90 3.33 -691.53 -2.30 -36.20 16 13 C -0.35 -21.05 10.05 84.03 0.84 -20.20 16 14 H 0.06 3.49 7.96 -2.91 -0.02 3.47 16 15 C -0.08 -4.54 5.09 84.86 0.43 -4.11 16 16 N -0.95 -59.26 12.82 21.65 0.28 -58.98 16 17 Si 1.12 52.55 30.00 68.60 2.06 54.61 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 C 0.11 5.11 7.01 86.73 0.61 5.72 16 22 C -0.08 -1.80 5.88 -19.87 -0.12 -1.92 16 23 C -0.12 -1.85 9.60 71.24 0.68 -1.17 16 24 C -0.13 -2.38 9.36 22.27 0.21 -2.18 16 25 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.81 8.09 -2.38 -0.02 0.79 16 27 H 0.08 0.77 8.09 -2.38 -0.02 0.75 16 28 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.12 3.46 7.01 -2.91 -0.02 3.44 16 30 H 0.06 1.63 7.49 -2.39 -0.02 1.61 16 31 H 0.08 1.76 8.10 -2.39 -0.02 1.74 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.02 0.83 6.84 -2.39 -0.02 0.81 16 35 H 0.03 1.46 7.73 -2.39 -0.02 1.44 16 36 H 0.26 16.23 5.83 -92.70 -0.54 15.69 16 37 H 0.02 1.14 8.06 -2.39 -0.02 1.12 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 41 H 0.06 1.07 6.64 -2.39 -0.02 1.05 16 42 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -71.26 338.85 4.67 -66.59 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.21 Total: 12.70 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: 4.70 Total: -24.92 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -2.02 Total: -95.18 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.27 Total: -13.81 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.06 Total: 54.61 kcal Total: -71.26 4.67 -66.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222853715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.974 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds