Wall clock time and date at job start Mon Mar 30 2020 02:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00097 * 2 1 4 4 C 1.38202 * 120.00008 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00219 * 359.81464 * 4 3 2 6 6 C 1.50706 * 120.00056 * 180.22731 * 5 4 3 7 7 C 1.38210 * 119.99822 * 0.42064 * 5 4 3 8 8 C 1.50700 * 120.00060 * 179.81007 * 7 5 4 9 9 O 1.42898 * 109.47251 * 179.72313 * 8 7 5 10 10 C 1.42895 * 114.00038 * 179.97438 * 9 8 7 11 11 H 1.08996 * 110.64095 * 328.31055 * 10 9 8 12 12 C 1.55163 * 110.87026 * 205.06585 * 10 9 8 13 13 C 1.55140 * 101.48282 * 205.89618 * 12 10 9 14 14 N 1.47425 * 104.72236 * 37.29725 * 13 12 10 15 15 C 1.36933 * 125.64884 * 155.81526 * 14 13 12 16 16 H 1.08003 * 119.99721 * 193.32768 * 15 14 13 17 17 C 1.38816 * 119.99961 * 13.32323 * 15 14 13 18 18 N 1.31616 * 119.99775 * 27.26821 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 207.26642 * 17 15 14 20 20 H 1.48502 * 109.47389 * 60.00434 * 19 17 15 21 21 H 1.48499 * 109.47223 * 300.00034 * 19 17 15 22 22 H 1.48503 * 109.47024 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70123 * 335.55406 * 14 13 12 24 24 C 1.38218 * 120.00014 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47075 * 270.01846 * 1 2 3 26 26 H 1.09005 * 109.46976 * 30.02447 * 1 2 3 27 27 H 1.09005 * 109.46739 * 150.02065 * 1 2 3 28 28 H 1.08002 * 119.99766 * 359.97438 * 3 2 1 29 29 H 1.08007 * 119.99736 * 180.02562 * 4 3 2 30 30 H 1.08993 * 109.47188 * 270.18670 * 6 5 4 31 31 H 1.08996 * 109.47026 * 30.19125 * 6 5 4 32 32 H 1.09000 * 109.46711 * 150.18863 * 6 5 4 33 33 H 1.09000 * 109.47139 * 59.72381 * 8 7 5 34 34 H 1.09003 * 109.47144 * 299.72437 * 8 7 5 35 35 H 1.08998 * 111.00445 * 324.13396 * 12 10 9 36 36 H 1.08992 * 111.00651 * 87.99364 * 12 10 9 37 37 H 1.08995 * 110.49999 * 278.45345 * 13 12 10 38 38 H 1.08999 * 110.33731 * 156.05932 * 13 12 10 39 39 H 0.97006 * 120.00147 * 5.85176 * 18 17 15 40 40 H 1.08996 * 109.88404 * 120.70446 * 23 14 13 41 41 H 1.08999 * 109.87400 * 241.87250 * 23 14 13 42 42 H 1.08000 * 119.99433 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0049 6 6 5.7787 0.0000 0.0107 7 6 3.5807 -1.1969 0.0000 8 6 4.3342 -2.5020 0.0005 9 8 3.4056 -3.5882 0.0014 10 6 4.0201 -4.8783 0.0013 11 1 4.9686 -4.8520 -0.5351 12 6 3.0718 -5.9423 -0.6120 13 6 3.5777 -7.2387 0.0736 14 7 3.9240 -6.8262 1.4460 15 6 3.9660 -7.6487 2.5399 16 1 4.0179 -7.2253 3.5321 17 6 3.9418 -9.0267 2.3736 18 7 4.4059 -9.5639 1.2653 19 14 3.2508 -10.1183 3.7227 20 1 1.8304 -9.7618 3.9691 21 1 4.0340 -9.9210 4.9689 22 1 3.3391 -11.5400 3.3030 23 6 4.2227 -5.3866 1.4442 24 6 2.1981 -1.1970 0.0005 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0010 30 1 6.1460 0.0019 -1.0155 31 1 6.1400 0.8890 0.5276 32 1 6.1400 -0.8909 0.5243 33 1 4.9611 -2.5593 0.8903 34 1 4.9606 -2.5603 -0.8896 35 1 2.0337 -5.7375 -0.3505 36 1 3.1967 -6.0000 -1.6932 37 1 4.4584 -7.6237 -0.4404 38 1 2.7887 -7.9906 0.0912 39 1 4.8416 -9.0066 0.6016 40 1 3.5435 -4.8662 2.1194 41 1 5.2548 -5.2220 1.7537 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222907895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:38 Heat of formation + Delta-G solvation = -10.086849 kcal Electronic energy + Delta-G solvation = -20944.041229 eV Core-core repulsion = 17889.130062 eV Total energy + Delta-G solvation = -3054.911167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.84547 -38.38096 -36.15587 -34.13694 -32.52151 -31.37791 -29.39626 -29.14204 -27.33141 -26.23089 -24.83167 -24.16021 -21.99074 -20.64776 -20.15508 -19.96746 -17.56977 -16.82621 -16.06606 -15.54941 -15.12228 -15.04226 -14.48907 -14.09797 -13.77361 -13.72282 -13.45466 -13.33894 -13.08025 -12.87189 -12.77298 -12.25911 -12.13652 -12.02919 -11.83308 -11.49609 -11.20258 -10.96793 -10.92712 -10.72239 -10.56392 -10.47818 -10.00761 -9.97684 -9.55416 -9.31142 -8.73700 -8.44486 -8.40511 -6.94396 -6.08244 -3.10676 1.24239 1.36727 3.51845 3.56337 3.64451 3.73386 3.76647 4.61734 4.68901 4.72770 4.83202 4.99310 5.04549 5.17034 5.23379 5.34441 5.38719 5.41181 5.43431 5.45145 5.50269 5.55633 5.57227 5.60329 5.71884 5.76284 5.81023 6.03818 6.06422 6.13959 6.26493 6.35411 6.38518 6.49808 6.57317 6.60044 6.68601 6.96830 6.98059 7.03777 7.54039 7.79073 8.49317 9.03505 9.83421 10.37107 11.25282 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.003523 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.692353 B = 7946.014463 C = 8291.107799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.090 4.090 6 C -0.118 4.118 7 C -0.080 4.080 8 C 0.102 3.898 9 O -0.374 6.374 10 C 0.077 3.923 11 H 0.065 0.935 12 C -0.128 4.128 13 C 0.145 3.855 14 N -0.602 5.602 15 C -0.335 4.335 16 H 0.066 0.934 17 C -0.027 4.027 18 N -0.921 5.921 19 Si 1.065 2.935 20 H -0.293 1.293 21 H -0.293 1.293 22 H -0.285 1.285 23 C 0.117 3.883 24 C -0.091 4.091 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.058 0.942 39 H 0.268 0.732 40 H 0.036 0.964 41 H 0.021 0.979 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 20.921 -5.394 21.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.090 4.090 6 C -0.174 4.174 7 C -0.080 4.080 8 C 0.026 3.974 9 O -0.292 6.292 10 C 0.019 3.981 11 H 0.083 0.917 12 C -0.167 4.167 13 C 0.019 3.981 14 N -0.330 5.330 15 C -0.463 4.463 16 H 0.084 0.916 17 C -0.228 4.228 18 N -0.563 5.563 19 Si 0.895 3.105 20 H -0.221 1.221 21 H -0.220 1.220 22 H -0.210 1.210 23 C -0.009 4.009 24 C -0.109 4.109 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.722 19.317 -4.894 20.112 hybrid contribution 0.807 1.674 -0.292 1.881 sum -1.915 20.990 -5.186 21.706 Atomic orbital electron populations 1.20776 0.91258 1.02625 1.02310 1.19951 0.96135 0.93114 1.00323 1.20977 0.94136 0.97389 1.01543 1.20889 0.94129 0.97069 1.01651 1.19609 0.95919 0.92355 1.01146 1.20824 0.91315 1.02956 1.02340 1.19593 0.94204 0.93260 1.00953 1.21211 0.91188 0.84570 1.00435 1.87867 1.32750 1.13548 1.95071 1.23189 0.95918 0.81928 0.97020 0.91722 1.22962 0.99676 0.95191 0.98866 1.21608 0.97612 0.93389 0.85471 1.44459 1.80141 1.03315 1.05132 1.19783 1.51634 0.89454 0.85401 0.91574 1.25739 0.99899 0.94368 1.02755 1.70795 1.36146 1.38161 1.11197 0.83520 0.76357 0.76192 0.74452 1.22084 1.22044 1.21043 1.21739 0.97532 0.87374 0.94231 1.20968 0.93567 0.98044 0.98281 0.91238 0.91822 0.91392 0.86359 0.86175 0.91123 0.91499 0.91350 0.91932 0.92219 0.90667 0.91477 0.95514 0.92379 0.91989 0.94642 0.96135 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.01 0.36 -0.69 16 2 C -0.10 -1.12 5.88 -104.62 -0.62 -1.73 16 3 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 4 C -0.12 -1.26 9.70 -39.59 -0.38 -1.64 16 5 C -0.09 -1.04 5.88 -104.62 -0.62 -1.66 16 6 C -0.12 -1.07 9.60 36.01 0.35 -0.72 16 7 C -0.08 -1.07 5.88 -104.63 -0.62 -1.69 16 8 C 0.10 1.42 4.92 36.01 0.18 1.60 16 9 O -0.37 -6.29 8.56 -35.23 -0.30 -6.59 16 10 C 0.08 1.42 3.39 -24.90 -0.08 1.33 16 11 H 0.06 1.09 7.88 -51.93 -0.41 0.68 16 12 C -0.13 -2.44 6.83 -24.45 -0.17 -2.61 16 13 C 0.14 3.45 5.22 -2.40 -0.01 3.44 16 14 N -0.60 -15.93 3.33 -169.93 -0.57 -16.50 16 15 C -0.34 -9.78 10.05 -15.06 -0.15 -9.94 16 16 H 0.07 1.92 7.96 -52.48 -0.42 1.51 16 17 C -0.03 -0.78 5.09 -17.43 -0.09 -0.87 16 18 N -0.92 -28.22 12.82 55.49 0.71 -27.51 16 19 Si 1.07 25.81 30.00 -169.99 -5.10 20.71 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.12 2.60 7.01 -3.06 -0.02 2.58 16 24 C -0.09 -1.24 9.03 -39.58 -0.36 -1.60 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.07 0.63 6.63 -51.93 -0.34 0.28 16 33 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 34 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.03 0.67 6.84 -51.93 -0.36 0.31 16 38 H 0.06 1.51 7.73 -51.93 -0.40 1.11 16 39 H 0.27 8.19 5.83 -40.82 -0.24 7.95 16 40 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.13 1.95 7.01 -52.49 -0.37 1.59 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -32.38 338.84 -9.54 -41.92 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.78 Total: -1.28 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.61 Total: -15.87 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.15 Total: -44.01 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.30 Total: -6.59 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.10 Total: 20.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.38 -9.54 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222907895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.832 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds