Wall clock time and date at job start Mon Mar 30 2020 02:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00097 * 2 1 4 4 C 1.38202 * 120.00008 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00219 * 359.81464 * 4 3 2 6 6 C 1.50706 * 120.00056 * 180.22731 * 5 4 3 7 7 C 1.38210 * 119.99822 * 0.42064 * 5 4 3 8 8 C 1.50700 * 120.00060 * 179.81007 * 7 5 4 9 9 O 1.42898 * 109.47251 * 179.72313 * 8 7 5 10 10 C 1.42895 * 114.00038 * 179.97438 * 9 8 7 11 11 H 1.08996 * 110.64095 * 328.31055 * 10 9 8 12 12 C 1.55163 * 110.87026 * 205.06585 * 10 9 8 13 13 C 1.55140 * 101.48282 * 205.89618 * 12 10 9 14 14 N 1.47425 * 104.72236 * 37.29725 * 13 12 10 15 15 C 1.36933 * 125.64884 * 155.81526 * 14 13 12 16 16 H 1.08003 * 119.99721 * 193.32768 * 15 14 13 17 17 C 1.38816 * 119.99961 * 13.32323 * 15 14 13 18 18 N 1.31616 * 119.99775 * 27.26821 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 207.26642 * 17 15 14 20 20 H 1.48502 * 109.47389 * 60.00434 * 19 17 15 21 21 H 1.48499 * 109.47223 * 300.00034 * 19 17 15 22 22 H 1.48503 * 109.47024 * 180.02562 * 19 17 15 23 23 C 1.47029 * 108.70123 * 335.55406 * 14 13 12 24 24 C 1.38218 * 120.00014 * 179.97438 * 2 1 3 25 25 H 1.08994 * 109.47075 * 270.01846 * 1 2 3 26 26 H 1.09005 * 109.46976 * 30.02447 * 1 2 3 27 27 H 1.09005 * 109.46739 * 150.02065 * 1 2 3 28 28 H 1.08002 * 119.99766 * 359.97438 * 3 2 1 29 29 H 1.08007 * 119.99736 * 180.02562 * 4 3 2 30 30 H 1.08993 * 109.47188 * 270.18670 * 6 5 4 31 31 H 1.08996 * 109.47026 * 30.19125 * 6 5 4 32 32 H 1.09000 * 109.46711 * 150.18863 * 6 5 4 33 33 H 1.09000 * 109.47139 * 59.72381 * 8 7 5 34 34 H 1.09003 * 109.47144 * 299.72437 * 8 7 5 35 35 H 1.08998 * 111.00445 * 324.13396 * 12 10 9 36 36 H 1.08992 * 111.00651 * 87.99364 * 12 10 9 37 37 H 1.08995 * 110.49999 * 278.45345 * 13 12 10 38 38 H 1.08999 * 110.33731 * 156.05932 * 13 12 10 39 39 H 0.97006 * 120.00147 * 5.85176 * 18 17 15 40 40 H 1.08996 * 109.88404 * 120.70446 * 23 14 13 41 41 H 1.08999 * 109.87400 * 241.87250 * 23 14 13 42 42 H 1.08000 * 119.99433 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0049 6 6 5.7787 0.0000 0.0107 7 6 3.5807 -1.1969 0.0000 8 6 4.3342 -2.5020 0.0005 9 8 3.4056 -3.5882 0.0014 10 6 4.0201 -4.8783 0.0013 11 1 4.9686 -4.8520 -0.5351 12 6 3.0718 -5.9423 -0.6120 13 6 3.5777 -7.2387 0.0736 14 7 3.9240 -6.8262 1.4460 15 6 3.9660 -7.6487 2.5399 16 1 4.0179 -7.2253 3.5321 17 6 3.9418 -9.0267 2.3736 18 7 4.4059 -9.5639 1.2653 19 14 3.2508 -10.1183 3.7227 20 1 1.8304 -9.7618 3.9691 21 1 4.0340 -9.9210 4.9689 22 1 3.3391 -11.5400 3.3030 23 6 4.2227 -5.3866 1.4442 24 6 2.1981 -1.1970 0.0005 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0010 30 1 6.1460 0.0019 -1.0155 31 1 6.1400 0.8890 0.5276 32 1 6.1400 -0.8909 0.5243 33 1 4.9611 -2.5593 0.8903 34 1 4.9606 -2.5603 -0.8896 35 1 2.0337 -5.7375 -0.3505 36 1 3.1967 -6.0000 -1.6932 37 1 4.4584 -7.6237 -0.4404 38 1 2.7887 -7.9906 0.0912 39 1 4.8416 -9.0066 0.6016 40 1 3.5435 -4.8662 2.1194 41 1 5.2548 -5.2220 1.7537 42 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222907895.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:38 Heat of formation + Delta-G solvation = -27.570505 kcal Electronic energy + Delta-G solvation = -20944.799377 eV Core-core repulsion = 17889.130062 eV Total energy + Delta-G solvation = -3055.669315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.80612 -39.86844 -37.76080 -35.03497 -34.39061 -32.48531 -31.04118 -30.12418 -29.01833 -27.41386 -26.19116 -25.57463 -22.95914 -22.19469 -21.95916 -21.00842 -19.68151 -18.15356 -17.07226 -16.76472 -16.44037 -16.14796 -15.78783 -15.76183 -15.24164 -15.13360 -14.80942 -14.69672 -14.10639 -14.01490 -13.70912 -13.52253 -13.49099 -13.13411 -12.78341 -12.72368 -12.66768 -12.53257 -12.43285 -12.26385 -11.91236 -11.89585 -11.69906 -11.61979 -11.57018 -10.78311 -10.54910 -9.65947 -9.29195 -9.09858 -8.38021 -5.37440 0.37701 0.47708 1.55909 1.64388 1.83832 2.43385 2.64382 2.77396 3.14420 3.50099 3.63568 3.78397 3.87007 3.92546 4.01681 4.05338 4.16690 4.25222 4.35300 4.37860 4.43986 4.49666 4.63157 4.68776 4.78817 4.79941 4.80162 4.83125 4.87682 4.88463 4.94184 5.00910 5.12542 5.20201 5.21881 5.36186 5.51089 5.58609 5.68613 5.70779 6.12132 6.23221 6.26680 6.84370 7.64922 8.21270 8.95525 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.003523 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.692353 B = 7946.014463 C = 8291.107799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.106 4.106 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.117 4.117 7 C -0.101 4.101 8 C 0.100 3.900 9 O -0.380 6.380 10 C 0.095 3.905 11 H 0.087 0.913 12 C -0.114 4.114 13 C 0.147 3.853 14 N -0.626 5.626 15 C -0.353 4.353 16 H 0.059 0.941 17 C -0.076 4.076 18 N -0.945 5.945 19 Si 1.118 2.882 20 H -0.282 1.282 21 H -0.274 1.274 22 H -0.287 1.287 23 C 0.114 3.886 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.017 0.983 38 H 0.027 0.973 39 H 0.258 0.742 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 23.175 -5.682 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.106 4.106 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.174 4.174 7 C -0.101 4.101 8 C 0.024 3.976 9 O -0.299 6.299 10 C 0.036 3.964 11 H 0.105 0.895 12 C -0.152 4.152 13 C 0.022 3.978 14 N -0.355 5.355 15 C -0.482 4.482 16 H 0.077 0.923 17 C -0.271 4.271 18 N -0.588 5.588 19 Si 0.941 3.059 20 H -0.208 1.208 21 H -0.199 1.199 22 H -0.213 1.213 23 C -0.011 4.011 24 C -0.135 4.135 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.719 21.615 -5.188 22.395 hybrid contribution 0.819 1.098 -0.197 1.384 sum -1.900 22.713 -5.385 23.420 Atomic orbital electron populations 1.20809 0.89892 1.03383 1.02771 1.20231 0.97355 0.92966 1.00015 1.21342 0.94537 0.97931 1.00337 1.21282 0.94374 0.97812 1.00340 1.19908 0.97255 0.91997 1.00544 1.20874 0.89654 1.03587 1.03249 1.19680 0.94261 0.93651 1.02539 1.21386 0.91009 0.83953 1.01240 1.87872 1.33665 1.13433 1.94930 1.22920 0.96645 0.82570 0.94216 0.89542 1.22833 0.99392 0.92577 1.00408 1.21533 0.96245 0.95107 0.84915 1.44738 1.80468 1.04765 1.05492 1.20051 1.51530 0.90356 0.86220 0.92320 1.27194 0.99648 0.96009 1.04279 1.70900 1.37771 1.38137 1.11999 0.82831 0.76359 0.74132 0.72549 1.20798 1.19937 1.21289 1.21863 0.96966 0.85292 0.97000 1.20968 0.94010 0.98173 1.00325 0.90859 0.89820 0.91899 0.83708 0.83385 0.89978 0.89799 0.91834 0.91963 0.90483 0.90969 0.88019 0.96576 0.95452 0.93169 0.95785 0.96211 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.24 0.71 -1.23 16 2 C -0.11 -2.36 5.88 -19.86 -0.12 -2.48 16 3 C -0.12 -2.31 9.70 22.27 0.22 -2.09 16 4 C -0.12 -2.19 9.70 22.27 0.22 -1.97 16 5 C -0.10 -2.05 5.88 -19.86 -0.12 -2.17 16 6 C -0.12 -1.84 9.60 71.24 0.68 -1.16 16 7 C -0.10 -2.64 5.88 -19.87 -0.12 -2.75 16 8 C 0.10 2.68 4.92 71.24 0.35 3.03 16 9 O -0.38 -12.57 8.56 -148.98 -1.27 -13.84 16 10 C 0.09 3.39 3.39 31.78 0.11 3.50 16 11 H 0.09 2.75 7.88 -2.39 -0.02 2.73 16 12 C -0.11 -4.25 6.83 32.07 0.22 -4.03 16 13 C 0.15 7.19 5.22 86.94 0.45 7.64 16 14 N -0.63 -33.90 3.33 -691.53 -2.30 -36.20 16 15 C -0.35 -21.09 10.05 84.03 0.84 -20.25 16 16 H 0.06 3.49 7.96 -2.91 -0.02 3.47 16 17 C -0.08 -4.48 5.09 84.86 0.43 -4.04 16 18 N -0.95 -59.16 12.82 21.65 0.28 -58.88 16 19 Si 1.12 52.48 30.00 68.60 2.06 54.54 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 23 C 0.11 5.13 7.01 86.73 0.61 5.74 16 24 C -0.12 -3.18 9.03 22.27 0.20 -2.98 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 27 H 0.06 1.13 8.09 -2.38 -0.02 1.12 16 28 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 32 H 0.06 1.05 6.63 -2.39 -0.02 1.04 16 33 H 0.06 1.65 7.48 -2.39 -0.02 1.64 16 34 H 0.08 1.78 8.11 -2.39 -0.02 1.76 16 35 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.02 0.83 6.84 -2.39 -0.02 0.82 16 38 H 0.03 1.47 7.73 -2.39 -0.02 1.45 16 39 H 0.26 16.21 5.83 -92.70 -0.54 15.67 16 40 H 0.02 1.13 8.06 -2.39 -0.02 1.11 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 3.46 7.01 -2.91 -0.02 3.44 16 Total: -1.00 -71.27 338.84 4.67 -66.61 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.21 Total: 13.03 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 4.70 Total: -25.25 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -2.02 Total: -95.09 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.27 Total: -13.84 kcal Atomic # 14 Polarization: 52.48 SS G_CDS: 2.06 Total: 54.54 kcal Total: -71.27 4.67 -66.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222907895.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.037 kcal (2) G-P(sol) polarization free energy of solvation -71.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds