Wall clock time and date at job start Mon Mar 30 2020 02:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00075 * 2 1 4 4 C 1.38211 * 120.00042 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00521 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00573 * 179.97438 * 5 4 3 7 7 C 1.38222 * 119.99658 * 359.97438 * 5 4 3 8 8 C 1.50693 * 119.99960 * 179.97438 * 7 5 4 9 9 O 1.42908 * 109.47081 * 180.02562 * 8 7 5 10 10 C 1.42900 * 113.99997 * 180.02562 * 9 8 7 11 11 C 1.53514 * 114.16934 * 150.00256 * 10 9 8 12 12 N 1.47483 * 87.92777 * 87.81254 * 11 10 9 13 13 C 1.46903 * 110.99717 * 138.70421 * 12 11 10 14 14 C 1.50694 * 109.47066 * 169.99804 * 13 12 11 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47480 * 87.83900 * 27.00973 * 12 11 10 23 23 C 1.38217 * 119.99866 * 180.27408 * 2 1 3 24 24 H 1.09001 * 109.47184 * 90.00536 * 1 2 3 25 25 H 1.08996 * 109.47433 * 209.99782 * 1 2 3 26 26 H 1.08996 * 109.47456 * 330.00732 * 1 2 3 27 27 H 1.08004 * 119.99874 * 359.97438 * 3 2 1 28 28 H 1.08007 * 120.00020 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47169 * 270.02075 * 6 5 4 30 30 H 1.08997 * 109.47065 * 30.02361 * 6 5 4 31 31 H 1.08999 * 109.46887 * 150.01988 * 6 5 4 32 32 H 1.09003 * 109.47110 * 60.00921 * 8 7 5 33 33 H 1.08996 * 109.47699 * 300.00307 * 8 7 5 34 34 H 1.09004 * 113.25466 * 17.04971 * 10 9 8 35 35 H 1.09000 * 113.47331 * 333.04932 * 11 10 9 36 36 H 1.08995 * 113.52785 * 202.58522 * 11 10 9 37 37 H 1.09007 * 109.47052 * 49.99488 * 13 12 11 38 38 H 1.09003 * 109.46808 * 290.00181 * 13 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 40 40 H 1.09004 * 113.47132 * 87.75237 * 22 12 11 41 41 H 1.09000 * 113.47538 * 218.21976 * 22 12 11 42 42 H 1.07991 * 120.00419 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5803 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 3.5806 -1.1970 0.0005 8 6 4.3341 -2.5020 0.0000 9 8 3.4055 -3.5883 0.0007 10 6 4.0201 -4.8783 0.0008 11 6 3.1957 -5.9672 0.7017 12 7 2.5189 -6.2087 -0.5863 13 6 2.3353 -7.6469 -0.8229 14 6 1.4329 -7.8490 -2.0128 15 1 1.0352 -6.9946 -2.5403 16 6 1.1141 -9.1247 -2.4275 17 7 1.5980 -10.1652 -1.7849 18 14 -0.0050 -9.3752 -3.9020 19 1 -0.1906 -10.8290 -4.1413 20 1 -1.3228 -8.7447 -3.6359 21 1 0.6093 -8.7511 -5.1013 22 6 3.7368 -5.7143 -1.2552 23 6 2.1980 -1.1970 -0.0057 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6582 2.1326 -0.0004 28 1 4.1204 2.1327 -0.0010 29 1 6.1412 -0.0001 -1.0297 30 1 6.1424 0.8900 0.5118 31 1 6.1424 -0.8899 0.5119 32 1 4.9617 -2.5596 0.8893 33 1 4.9598 -2.5600 -0.8906 34 1 5.0697 -4.8550 0.2940 35 1 2.5323 -5.5795 1.4748 36 1 3.7927 -6.8126 1.0436 37 1 1.8842 -8.1053 0.0573 38 1 3.3028 -8.1094 -1.0178 39 1 1.3734 -11.0627 -2.0764 40 1 4.4790 -6.4919 -1.4358 41 1 3.5319 -5.1123 -2.1405 42 1 1.6581 -2.1322 -0.0098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222908341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:14 Heat of formation + Delta-G solvation = -12.042729 kcal Electronic energy + Delta-G solvation = -20619.006829 eV Core-core repulsion = 17564.010848 eV Total energy + Delta-G solvation = -3054.995980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16078 -40.46868 -37.76387 -35.08837 -34.82569 -32.51397 -30.93683 -30.06862 -27.55665 -27.03326 -26.63878 -25.54556 -23.63754 -22.85481 -21.21091 -20.65628 -18.59445 -17.83592 -17.16781 -16.78968 -16.61236 -16.26147 -16.13945 -15.57186 -15.39979 -15.04219 -14.65816 -14.63738 -14.08468 -13.96023 -13.66343 -13.60907 -13.41058 -13.35356 -13.04591 -12.79034 -12.71211 -12.49941 -12.32919 -12.29182 -11.98585 -11.84342 -11.64914 -11.46445 -11.26193 -10.64159 -10.53497 -9.61418 -9.55137 -9.25133 -8.24823 -6.35105 0.41592 0.51429 1.37324 1.41100 1.49435 2.37663 2.47439 2.81136 3.06752 3.43519 3.46207 3.86527 3.96145 3.98855 4.07391 4.20036 4.26675 4.38861 4.48821 4.50155 4.53018 4.58099 4.67042 4.72617 4.72882 4.79970 4.83914 4.88383 4.89966 4.97477 4.99396 5.03698 5.15601 5.24374 5.39971 5.54735 5.57254 5.72561 5.74918 5.79478 6.08287 6.16536 6.35065 6.49512 6.78894 7.34341 8.86048 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022140 B = 0.003512 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.368938 B = 7970.045882 C = 8739.294769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.115 4.115 7 C -0.101 4.101 8 C 0.099 3.901 9 O -0.369 6.369 10 C 0.084 3.916 11 C -0.010 4.010 12 N -0.486 5.486 13 C 0.172 3.828 14 C -0.529 4.529 15 H 0.053 0.947 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.970 3.030 19 H -0.277 1.277 20 H -0.270 1.270 21 H -0.268 1.268 22 C -0.013 4.013 23 C -0.118 4.118 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.000 1.000 38 H -0.015 1.015 39 H 0.266 0.734 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 23.484 5.107 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.108 4.108 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.095 4.095 6 C -0.172 4.172 7 C -0.101 4.101 8 C 0.023 3.977 9 O -0.288 6.288 10 C 0.025 3.975 11 C -0.139 4.139 12 N -0.209 5.209 13 C 0.045 3.955 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.794 3.206 19 H -0.202 1.202 20 H -0.196 1.196 21 H -0.193 1.193 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.018 0.982 38 H 0.003 0.997 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.529 23.581 4.963 25.246 hybrid contribution 0.066 -1.436 -0.556 1.541 sum 7.596 22.145 4.407 23.822 Atomic orbital electron populations 1.20802 0.90345 1.03172 1.02654 1.20202 0.97138 0.93174 1.00273 1.21317 0.94724 0.97697 1.00529 1.21292 0.94189 0.98029 1.00413 1.19924 0.97460 0.91767 1.00365 1.20873 0.89196 1.03923 1.03188 1.19730 0.93950 0.94143 1.02276 1.21478 0.90881 0.83524 1.01805 1.87949 1.33373 1.13118 1.94354 1.23065 0.96845 0.82579 0.94972 1.24109 0.97364 0.97240 0.95179 1.68951 1.29869 1.17381 1.04669 1.19957 0.94805 0.85029 0.95681 1.21386 1.29519 0.92195 1.13639 0.92917 1.25923 0.97856 0.95452 1.00323 1.70059 1.46241 0.98743 1.42251 0.85430 0.79019 0.77174 0.78965 1.20203 1.19555 1.19272 1.24278 0.92696 0.98300 0.98960 1.20974 0.94448 0.97912 1.00292 0.91008 0.92324 0.89797 0.83932 0.83345 0.90315 0.89810 0.90988 0.89936 0.90892 0.86604 0.90108 0.90164 0.98223 0.99708 0.92492 0.90929 0.91194 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 10.01 71.23 0.71 -1.57 16 2 C -0.11 -2.59 5.88 -19.87 -0.12 -2.71 16 3 C -0.12 -2.43 9.70 22.27 0.22 -2.21 16 4 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 5 C -0.10 -1.89 5.88 -19.87 -0.12 -2.00 16 6 C -0.12 -1.51 9.60 71.24 0.68 -0.83 16 7 C -0.10 -2.54 5.88 -19.86 -0.12 -2.66 16 8 C 0.10 2.34 4.89 71.23 0.35 2.68 16 9 O -0.37 -11.77 8.88 -148.98 -1.32 -13.09 16 10 C 0.08 2.58 4.65 30.94 0.14 2.72 16 11 C -0.01 -0.36 7.52 83.58 0.63 0.27 16 12 N -0.49 -22.83 6.32 -932.86 -5.89 -28.72 16 13 C 0.17 9.63 4.57 85.55 0.39 10.02 16 14 C -0.53 -32.02 9.39 25.60 0.24 -31.78 16 15 H 0.05 3.21 7.81 -2.91 -0.02 3.19 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 18 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.01 -0.50 7.56 83.58 0.63 0.14 16 23 C -0.12 -3.38 9.03 22.27 0.20 -3.18 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 26 H 0.08 1.29 8.09 -2.39 -0.02 1.28 16 27 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 28 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 31 H 0.07 0.87 6.64 -2.39 -0.02 0.85 16 32 H 0.08 1.56 7.49 -2.39 -0.02 1.54 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.12 2.58 7.88 -2.38 -0.02 2.56 16 35 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.08 2.78 7.91 -2.39 -0.02 2.76 16 37 H 0.00 -0.02 8.08 -2.38 -0.02 -0.04 16 38 H -0.01 -0.85 7.30 -2.39 -0.02 -0.87 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.07 2.76 7.42 -2.39 -0.02 2.74 16 41 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.11 3.65 7.01 -2.91 -0.02 3.63 16 Total: -1.00 -71.72 345.99 0.60 -71.12 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.98 Total: 12.23 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 4.53 Total: -32.45 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.61 Total: -85.82 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -1.32 Total: -13.09 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.72 0.60 -71.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222908341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.079 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds