Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 120.00109 * 2 1 4 4 C 1.38209 * 120.00051 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00014 * 359.85891 * 4 3 2 6 6 C 1.38216 * 119.99752 * 0.39598 * 5 4 3 7 7 C 1.50698 * 119.99865 * 179.81391 * 6 5 4 8 8 O 1.42894 * 109.47104 * 359.72131 * 7 6 5 9 9 C 1.42899 * 114.00294 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.64134 * 328.31626 * 9 8 7 11 11 C 1.55154 * 110.87555 * 205.06818 * 9 8 7 12 12 C 1.55125 * 101.48572 * 205.89627 * 11 9 8 13 13 N 1.47423 * 104.72395 * 37.29433 * 12 11 9 14 14 C 1.36938 * 125.64840 * 155.81746 * 13 12 11 15 15 H 1.08002 * 119.99798 * 193.30965 * 14 13 12 16 16 C 1.38805 * 120.00326 * 13.30689 * 14 13 12 17 17 N 1.31619 * 119.99643 * 27.28488 * 16 14 13 18 18 Si 1.86803 * 120.00275 * 207.28323 * 16 14 13 19 19 H 1.48496 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46883 * 240.00007 * 18 16 14 21 21 H 1.48496 * 109.47035 * 120.00305 * 18 16 14 22 22 C 1.47022 * 108.69958 * 335.55457 * 13 12 11 23 23 C 1.38210 * 119.99781 * 180.02562 * 2 1 3 24 24 C 1.50703 * 120.00191 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47208 * 269.97846 * 1 2 3 26 26 H 1.08997 * 109.47374 * 29.97635 * 1 2 3 27 27 H 1.09000 * 109.47435 * 149.97938 * 1 2 3 28 28 H 1.08005 * 119.99937 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00067 * 180.02562 * 4 3 2 30 30 H 1.07999 * 120.00097 * 180.20590 * 5 4 3 31 31 H 1.09003 * 109.46510 * 239.72759 * 7 6 5 32 32 H 1.08992 * 109.47316 * 119.72478 * 7 6 5 33 33 H 1.09001 * 111.00439 * 324.13374 * 11 9 8 34 34 H 1.09003 * 111.00478 * 87.99000 * 11 9 8 35 35 H 1.09002 * 110.50230 * 278.45118 * 12 11 9 36 36 H 1.09005 * 110.34880 * 156.05846 * 12 11 9 37 37 H 0.96994 * 120.00297 * 5.84617 * 17 16 14 38 38 H 1.08999 * 109.88184 * 120.70859 * 22 13 12 39 39 H 1.09003 * 109.88022 * 241.86657 * 22 13 12 40 40 H 1.09001 * 109.46679 * 269.97942 * 24 23 2 41 41 H 1.08998 * 109.47144 * 29.97944 * 24 23 2 42 42 H 1.08996 * 109.47185 * 149.98406 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0040 6 6 3.5806 -1.1971 -0.0013 7 6 4.3341 -2.5021 -0.0017 8 8 5.7389 -2.2411 -0.0027 9 6 6.5490 -3.4183 -0.0037 10 1 6.0521 -4.2271 0.5321 11 6 7.9446 -3.1296 0.6096 12 6 8.8143 -4.2153 -0.0771 13 7 8.2837 -4.3077 -1.4494 14 6 8.9748 -4.7545 -2.5439 15 1 8.5819 -4.5872 -3.5359 16 6 10.1804 -5.4223 -2.3784 17 7 10.4140 -6.0939 -1.2708 18 14 11.4711 -5.3681 -3.7277 19 1 10.9674 -4.5530 -4.8621 20 1 11.7542 -6.7481 -4.1976 21 1 12.7176 -4.7608 -3.1961 22 6 6.8876 -3.8467 -1.4470 23 6 2.1980 -1.1970 -0.0005 24 6 1.4445 -2.5021 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6583 2.1327 0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.3517 -0.0001 0.0078 31 1 4.0701 -3.0736 -0.8917 32 1 4.0713 -3.0737 0.8883 33 1 8.2863 -2.1280 0.3489 34 1 7.9323 -3.2676 1.6908 35 1 8.7074 -5.1710 0.4361 36 1 9.8600 -3.9081 -0.0946 37 1 9.7137 -6.1933 -0.6070 38 1 6.7764 -2.9978 -2.1216 39 1 6.2289 -4.6579 -1.7572 40 1 1.2636 -2.8171 1.0272 41 1 0.4917 -2.3715 -0.5136 42 1 2.0332 -3.2615 -0.5150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223031564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = -6.992727 kcal Electronic energy + Delta-G solvation = -20921.616331 eV Core-core repulsion = 17866.839336 eV Total energy + Delta-G solvation = -3054.776996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.91904 -38.40434 -36.17398 -33.46095 -33.07759 -32.08190 -29.21490 -28.21510 -27.08465 -26.56185 -25.78062 -24.14323 -21.08437 -20.77024 -20.27957 -20.09519 -17.57447 -16.79841 -16.31750 -15.66886 -15.14134 -15.01083 -14.47879 -14.26358 -13.87956 -13.72610 -13.35049 -13.07499 -13.04808 -12.97061 -12.73549 -12.26506 -12.22200 -12.01210 -11.94099 -11.53436 -11.17041 -10.94292 -10.87629 -10.71068 -10.55537 -10.45489 -10.04277 -9.98111 -9.56293 -9.30798 -8.60809 -8.56893 -8.40178 -6.94037 -6.08185 -3.10578 1.27377 1.33465 3.53415 3.57078 3.65897 3.70136 3.75334 4.61159 4.68175 4.70116 4.84401 4.94199 5.04857 5.17589 5.20751 5.24729 5.29089 5.35055 5.43570 5.45163 5.54401 5.55802 5.58866 5.63075 5.67186 5.73246 5.74396 6.01235 6.04667 6.14932 6.26820 6.38247 6.42649 6.49781 6.54720 6.59443 6.69216 6.97082 6.97902 7.03892 7.54207 7.79852 8.49740 9.03846 9.83588 10.37176 11.25501 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.003267 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.384323 B = 8567.513657 C = 8637.697130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.124 4.124 5 C -0.096 4.096 6 C -0.080 4.080 7 C 0.103 3.897 8 O -0.374 6.374 9 C 0.077 3.923 10 H 0.065 0.935 11 C -0.128 4.128 12 C 0.145 3.855 13 N -0.602 5.602 14 C -0.334 4.334 15 H 0.067 0.933 16 C -0.027 4.027 17 N -0.923 5.923 18 Si 1.070 2.930 19 H -0.292 1.292 20 H -0.295 1.295 21 H -0.289 1.289 22 C 0.117 3.883 23 C -0.085 4.085 24 C -0.122 4.122 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.269 0.731 38 H 0.036 0.964 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.725 11.436 5.419 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.142 4.142 5 C -0.114 4.114 6 C -0.080 4.080 7 C 0.026 3.974 8 O -0.292 6.292 9 C 0.019 3.981 10 H 0.083 0.917 11 C -0.167 4.167 12 C 0.019 3.981 13 N -0.331 5.331 14 C -0.461 4.461 15 H 0.085 0.915 16 C -0.228 4.228 17 N -0.565 5.565 18 Si 0.900 3.100 19 H -0.219 1.219 20 H -0.222 1.222 21 H -0.216 1.216 22 C -0.009 4.009 23 C -0.085 4.085 24 C -0.178 4.178 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.152 0.848 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.069 11.135 4.911 20.963 hybrid contribution -1.688 0.192 0.334 1.731 sum -18.757 11.327 5.245 22.531 Atomic orbital electron populations 1.20824 0.91398 1.02707 1.02161 1.19639 0.95770 0.92503 1.01278 1.20983 0.94330 0.97207 1.01504 1.21152 0.94177 0.98103 1.00789 1.21072 1.00999 0.91289 0.98005 1.19591 0.92548 0.94923 1.00955 1.21201 0.81876 0.93889 1.00414 1.87866 1.15090 1.31203 1.95069 1.23189 0.91442 0.86404 0.97021 0.91729 1.22960 0.93678 1.01189 0.98863 1.21607 0.96888 0.94126 0.85465 1.44473 1.07064 1.76418 1.05117 1.19827 1.05526 1.35401 0.85393 0.91530 1.25740 0.99267 0.95074 1.02753 1.70729 1.38180 1.36308 1.11237 0.83464 0.76103 0.75848 0.74586 1.21855 1.22192 1.21617 1.21739 0.87917 0.97004 0.94227 1.19448 0.92522 0.95127 1.01381 1.20901 1.00166 0.94307 1.02406 0.91347 0.91772 0.91223 0.86375 0.86128 0.84798 0.91952 0.92245 0.90655 0.91478 0.95527 0.92367 0.91924 0.94630 0.96139 0.91054 0.91078 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.60 36.00 0.35 -0.52 16 2 C -0.09 -0.98 5.88 -104.63 -0.62 -1.59 16 3 C -0.12 -1.30 9.70 -39.59 -0.38 -1.68 16 4 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 5 C -0.10 -1.30 9.38 -39.58 -0.37 -1.67 16 6 C -0.08 -1.07 5.88 -104.62 -0.62 -1.69 16 7 C 0.10 1.42 4.92 36.00 0.18 1.60 16 8 O -0.37 -6.29 8.56 -35.23 -0.30 -6.59 16 9 C 0.08 1.42 3.39 -24.90 -0.08 1.33 16 10 H 0.06 1.09 7.88 -51.93 -0.41 0.68 16 11 C -0.13 -2.44 6.83 -24.47 -0.17 -2.61 16 12 C 0.14 3.46 5.22 -2.41 -0.01 3.44 16 13 N -0.60 -15.94 3.33 -169.94 -0.57 -16.51 16 14 C -0.33 -9.75 10.05 -15.06 -0.15 -9.90 16 15 H 0.07 1.94 7.96 -52.49 -0.42 1.53 16 16 C -0.03 -0.80 5.09 -17.43 -0.09 -0.89 16 17 N -0.92 -28.29 12.82 55.49 0.71 -27.58 16 18 Si 1.07 25.97 30.00 -169.99 -5.10 20.87 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.12 2.60 7.01 -3.07 -0.02 2.58 16 23 C -0.08 -0.98 5.88 -104.62 -0.62 -1.60 16 24 C -0.12 -1.10 9.19 36.01 0.33 -0.77 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.92 7.01 -52.49 -0.37 1.56 16 31 H 0.06 0.85 7.49 -51.93 -0.39 0.46 16 32 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.66 6.84 -51.93 -0.36 0.31 16 36 H 0.06 1.51 7.73 -51.93 -0.40 1.11 16 37 H 0.27 8.21 5.83 -40.82 -0.24 7.97 16 38 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.54 5.95 -51.93 -0.31 0.23 16 42 H 0.07 0.62 6.64 -51.93 -0.34 0.28 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -32.45 334.45 -9.44 -41.89 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.55 Total: -1.33 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -2.67 Total: -15.80 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.15 Total: -44.09 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.30 Total: -6.59 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.10 Total: 20.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.45 -9.44 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223031564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.900 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds