Wall clock time and date at job start Mon Mar 30 2020 02:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 120.00109 * 2 1 4 4 C 1.38209 * 120.00051 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00014 * 359.85891 * 4 3 2 6 6 C 1.38216 * 119.99752 * 0.39598 * 5 4 3 7 7 C 1.50698 * 119.99865 * 179.81391 * 6 5 4 8 8 O 1.42894 * 109.47104 * 359.72131 * 7 6 5 9 9 C 1.42899 * 114.00294 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.64134 * 328.31626 * 9 8 7 11 11 C 1.55154 * 110.87555 * 205.06818 * 9 8 7 12 12 C 1.55125 * 101.48572 * 205.89627 * 11 9 8 13 13 N 1.47423 * 104.72395 * 37.29433 * 12 11 9 14 14 C 1.36938 * 125.64840 * 155.81746 * 13 12 11 15 15 H 1.08002 * 119.99798 * 193.30965 * 14 13 12 16 16 C 1.38805 * 120.00326 * 13.30689 * 14 13 12 17 17 N 1.31619 * 119.99643 * 27.28488 * 16 14 13 18 18 Si 1.86803 * 120.00275 * 207.28323 * 16 14 13 19 19 H 1.48496 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46883 * 240.00007 * 18 16 14 21 21 H 1.48496 * 109.47035 * 120.00305 * 18 16 14 22 22 C 1.47022 * 108.69958 * 335.55457 * 13 12 11 23 23 C 1.38210 * 119.99781 * 180.02562 * 2 1 3 24 24 C 1.50703 * 120.00191 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47208 * 269.97846 * 1 2 3 26 26 H 1.08997 * 109.47374 * 29.97635 * 1 2 3 27 27 H 1.09000 * 109.47435 * 149.97938 * 1 2 3 28 28 H 1.08005 * 119.99937 * 0.02562 * 3 2 1 29 29 H 1.07996 * 120.00067 * 180.02562 * 4 3 2 30 30 H 1.07999 * 120.00097 * 180.20590 * 5 4 3 31 31 H 1.09003 * 109.46510 * 239.72759 * 7 6 5 32 32 H 1.08992 * 109.47316 * 119.72478 * 7 6 5 33 33 H 1.09001 * 111.00439 * 324.13374 * 11 9 8 34 34 H 1.09003 * 111.00478 * 87.99000 * 11 9 8 35 35 H 1.09002 * 110.50230 * 278.45118 * 12 11 9 36 36 H 1.09005 * 110.34880 * 156.05846 * 12 11 9 37 37 H 0.96994 * 120.00297 * 5.84617 * 17 16 14 38 38 H 1.08999 * 109.88184 * 120.70859 * 22 13 12 39 39 H 1.09003 * 109.88022 * 241.86657 * 22 13 12 40 40 H 1.09001 * 109.46679 * 269.97942 * 24 23 2 41 41 H 1.08998 * 109.47144 * 29.97944 * 24 23 2 42 42 H 1.08996 * 109.47185 * 149.98406 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0040 6 6 3.5806 -1.1971 -0.0013 7 6 4.3341 -2.5021 -0.0017 8 8 5.7389 -2.2411 -0.0027 9 6 6.5490 -3.4183 -0.0037 10 1 6.0521 -4.2271 0.5321 11 6 7.9446 -3.1296 0.6096 12 6 8.8143 -4.2153 -0.0771 13 7 8.2837 -4.3077 -1.4494 14 6 8.9748 -4.7545 -2.5439 15 1 8.5819 -4.5872 -3.5359 16 6 10.1804 -5.4223 -2.3784 17 7 10.4140 -6.0939 -1.2708 18 14 11.4711 -5.3681 -3.7277 19 1 10.9674 -4.5530 -4.8621 20 1 11.7542 -6.7481 -4.1976 21 1 12.7176 -4.7608 -3.1961 22 6 6.8876 -3.8467 -1.4470 23 6 2.1980 -1.1970 -0.0005 24 6 1.4445 -2.5021 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6583 2.1327 0.0004 29 1 4.1204 2.1326 0.0010 30 1 5.3517 -0.0001 0.0078 31 1 4.0701 -3.0736 -0.8917 32 1 4.0713 -3.0737 0.8883 33 1 8.2863 -2.1280 0.3489 34 1 7.9323 -3.2676 1.6908 35 1 8.7074 -5.1710 0.4361 36 1 9.8600 -3.9081 -0.0946 37 1 9.7137 -6.1933 -0.6070 38 1 6.7764 -2.9978 -2.1216 39 1 6.2289 -4.6579 -1.7572 40 1 1.2636 -2.8171 1.0272 41 1 0.4917 -2.3715 -0.5136 42 1 2.0332 -3.2615 -0.5150 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223031564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:32 Heat of formation + Delta-G solvation = -24.661116 kcal Electronic energy + Delta-G solvation = -20922.382490 eV Core-core repulsion = 17866.839336 eV Total energy + Delta-G solvation = -3055.543155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85713 -39.89805 -37.78126 -34.62474 -34.23830 -33.52783 -31.09613 -29.37008 -28.49927 -27.39896 -26.84324 -26.10308 -22.25162 -22.18439 -21.64282 -21.45704 -19.68610 -18.11082 -17.30764 -16.84080 -16.45544 -16.19157 -15.79409 -15.72459 -15.31574 -15.11905 -14.90349 -14.64814 -14.01854 -13.84198 -13.71276 -13.49648 -13.41741 -13.17125 -12.88222 -12.67814 -12.61223 -12.53621 -12.50047 -12.33435 -11.89374 -11.76220 -11.70224 -11.63275 -11.54823 -10.78200 -10.54895 -9.48817 -9.44224 -9.09744 -8.38159 -5.37497 0.39287 0.45779 1.55968 1.64672 1.81429 2.42884 2.63866 2.78193 3.14308 3.49993 3.63610 3.78957 3.87919 3.93165 4.01283 4.04849 4.18522 4.23361 4.34914 4.37729 4.42832 4.49032 4.55343 4.70964 4.77975 4.80977 4.81324 4.87749 4.89466 4.89581 5.00772 5.01132 5.03800 5.21309 5.22039 5.40975 5.58129 5.59725 5.62285 5.72491 6.12439 6.23190 6.26786 6.84470 7.64825 8.21065 8.95484 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035062 B = 0.003267 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.384323 B = 8567.513657 C = 8637.697130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.125 4.125 4 C -0.132 4.132 5 C -0.121 4.121 6 C -0.101 4.101 7 C 0.100 3.900 8 O -0.380 6.380 9 C 0.095 3.905 10 H 0.087 0.913 11 C -0.114 4.114 12 C 0.147 3.853 13 N -0.626 5.626 14 C -0.351 4.351 15 H 0.058 0.942 16 C -0.077 4.077 17 N -0.946 5.946 18 Si 1.122 2.878 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.285 1.285 22 C 0.114 3.886 23 C -0.093 4.093 24 C -0.121 4.121 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.258 0.742 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.735 12.406 5.751 24.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.143 4.143 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.101 4.101 7 C 0.025 3.975 8 O -0.299 6.299 9 C 0.037 3.963 10 H 0.105 0.895 11 C -0.152 4.152 12 C 0.022 3.978 13 N -0.355 5.355 14 C -0.479 4.479 15 H 0.076 0.924 16 C -0.272 4.272 17 N -0.589 5.589 18 Si 0.946 3.054 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.012 4.012 23 C -0.093 4.093 24 C -0.177 4.177 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.117 12.122 5.253 23.237 hybrid contribution -1.181 -0.052 0.226 1.204 sum -20.298 12.070 5.479 24.243 Atomic orbital electron populations 1.20889 0.89030 1.03801 1.03212 1.20075 0.97563 0.92084 0.99894 1.21342 0.93998 0.98500 1.00435 1.21373 0.95017 0.98030 1.00529 1.21071 1.00369 0.92491 1.00019 1.19676 0.93530 0.94389 1.02490 1.21372 0.80140 0.94806 1.01217 1.87870 1.16731 1.30351 1.94928 1.22920 0.91686 0.87536 0.94207 0.89540 1.22831 0.92896 0.99073 1.00405 1.21531 0.96178 0.95187 0.84899 1.44750 1.09014 1.76238 1.05477 1.20076 1.06393 1.35270 0.86167 0.92386 1.27190 1.01245 0.94515 1.04286 1.70838 1.37977 1.38081 1.12030 0.82782 0.73704 0.76393 0.72541 1.20067 1.21351 1.21089 1.21866 0.85954 0.96325 0.97010 1.19751 0.91942 0.96740 1.00909 1.20959 1.00536 0.92922 1.03316 0.90168 0.90523 0.90359 0.83830 0.84640 0.86598 0.91986 0.90507 0.90938 0.88012 0.96588 0.95442 0.93104 0.95773 0.96205 0.89907 0.89392 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.60 71.24 0.68 -0.65 16 2 C -0.10 -1.81 5.88 -19.87 -0.12 -1.93 16 3 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 4 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 5 C -0.12 -3.29 9.38 22.27 0.21 -3.08 16 6 C -0.10 -2.63 5.88 -19.87 -0.12 -2.75 16 7 C 0.10 2.69 4.92 71.24 0.35 3.04 16 8 O -0.38 -12.54 8.56 -148.98 -1.27 -13.82 16 9 C 0.09 3.39 3.39 31.78 0.11 3.49 16 10 H 0.09 2.74 7.88 -2.39 -0.02 2.72 16 11 C -0.11 -4.24 6.83 32.06 0.22 -4.03 16 12 C 0.15 7.18 5.22 86.93 0.45 7.64 16 13 N -0.63 -33.90 3.33 -691.57 -2.30 -36.20 16 14 C -0.35 -20.95 10.05 84.03 0.84 -20.11 16 15 H 0.06 3.47 7.96 -2.91 -0.02 3.44 16 16 C -0.08 -4.55 5.09 84.86 0.43 -4.12 16 17 N -0.95 -59.22 12.82 21.65 0.28 -58.94 16 18 Si 1.12 52.78 30.00 68.60 2.06 54.83 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 C 0.11 5.12 7.01 86.73 0.61 5.72 16 23 C -0.09 -2.00 5.88 -19.87 -0.12 -2.12 16 24 C -0.12 -1.93 9.19 71.24 0.66 -1.27 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.73 8.09 -2.39 -0.02 0.71 16 27 H 0.08 0.80 5.95 -2.39 -0.01 0.78 16 28 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.12 3.45 7.01 -2.91 -0.02 3.43 16 31 H 0.06 1.65 7.49 -2.39 -0.02 1.63 16 32 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 33 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 35 H 0.02 0.83 6.84 -2.39 -0.02 0.81 16 36 H 0.03 1.47 7.73 -2.38 -0.02 1.45 16 37 H 0.26 16.25 5.83 -92.71 -0.54 15.71 16 38 H 0.02 1.13 8.06 -2.39 -0.02 1.11 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.08 5.95 -2.39 -0.01 1.07 16 42 H 0.06 1.06 6.64 -2.39 -0.02 1.05 16 Total: -1.00 -71.30 334.45 4.63 -66.67 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.22 Total: 12.47 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 4.65 Total: -25.01 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -2.02 Total: -95.14 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -1.27 Total: -13.82 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.06 Total: 54.83 kcal Total: -71.30 4.63 -66.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223031564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.005 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds