Wall clock time and date at job start Mon Mar 30 2020 02:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 120.00044 * 2 1 4 4 C 1.38214 * 119.99877 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99981 * 359.95997 * 5 4 3 7 7 C 1.50693 * 120.00301 * 180.02562 * 6 5 4 8 8 O 1.42908 * 109.47081 * 359.97438 * 7 6 5 9 9 C 1.42900 * 113.99997 * 180.02562 * 8 7 6 10 10 C 1.53514 * 114.16934 * 150.00256 * 9 8 7 11 11 N 1.47483 * 87.92777 * 87.81254 * 10 9 8 12 12 C 1.46903 * 110.99717 * 138.70421 * 11 10 9 13 13 C 1.50694 * 109.47066 * 169.99804 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47480 * 87.83900 * 27.00973 * 11 10 9 22 22 C 1.38207 * 119.99947 * 180.20592 * 2 1 3 23 23 C 1.50702 * 120.00339 * 0.02562 * 22 2 1 24 24 H 1.09002 * 109.46997 * 90.00067 * 1 2 3 25 25 H 1.08995 * 109.47318 * 210.00239 * 1 2 3 26 26 H 1.09006 * 109.47178 * 330.00411 * 1 2 3 27 27 H 1.08001 * 119.99906 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.99966 * 179.97438 * 4 3 2 29 29 H 1.07994 * 120.00316 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.47110 * 239.99933 * 7 6 5 31 31 H 1.08996 * 109.47699 * 119.99318 * 7 6 5 32 32 H 1.09004 * 113.25466 * 17.04971 * 9 8 7 33 33 H 1.09000 * 113.47331 * 333.04932 * 10 9 8 34 34 H 1.08997 * 113.47627 * 202.58057 * 10 9 8 35 35 H 1.09007 * 109.47052 * 49.99488 * 12 11 10 36 36 H 1.09003 * 109.46808 * 290.00181 * 12 11 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.09004 * 113.47132 * 87.75237 * 21 11 10 39 39 H 1.09000 * 113.47538 * 218.21976 * 21 11 10 40 40 H 1.08999 * 109.47225 * 270.19550 * 23 22 2 41 41 H 1.08999 * 109.46577 * 30.19215 * 23 22 2 42 42 H 1.08994 * 109.47384 * 150.18950 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1970 0.0008 7 6 4.3341 -2.5020 0.0014 8 8 5.7391 -2.2409 -0.0002 9 6 6.5491 -3.4182 -0.0004 10 6 7.9039 -3.2489 -0.7022 11 7 8.4522 -2.7831 0.5852 12 6 9.7896 -3.3431 0.8213 13 6 10.4165 -2.6623 2.0105 14 1 9.8758 -1.8904 2.5381 15 6 11.6810 -3.0239 2.4246 16 7 12.3398 -3.9634 1.7819 17 14 12.4584 -2.1794 3.8983 18 1 13.8104 -2.7456 4.1370 19 1 12.5711 -0.7230 3.6317 20 1 11.6115 -2.3989 5.0982 21 6 7.4154 -3.5904 1.2551 22 6 2.1980 -1.1969 -0.0043 23 6 1.4446 -2.5021 -0.0096 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5138 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 5.3516 0.0000 -0.0014 30 1 4.0702 -3.0743 -0.8880 31 1 4.0715 -3.0729 0.8920 32 1 6.0039 -4.3156 -0.2930 33 1 7.8993 -2.4808 -1.4756 34 1 8.3365 -4.1893 -1.0437 35 1 10.4116 -3.1820 -0.0593 36 1 9.7065 -4.4123 1.0166 37 1 13.2295 -4.2176 2.0730 38 1 7.7178 -4.6219 1.4359 39 1 6.9971 -3.1117 2.1405 40 1 1.2595 -2.8189 1.0168 41 1 0.4939 -2.3706 -0.5263 42 1 2.0353 -3.2605 -0.5231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223032237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:55 Heat of formation + Delta-G solvation = -10.520850 kcal Electronic energy + Delta-G solvation = -20563.515253 eV Core-core repulsion = 17508.585266 eV Total energy + Delta-G solvation = -3054.929987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17025 -40.53709 -37.79226 -35.03798 -34.20235 -33.64175 -31.06218 -28.81903 -27.38254 -27.16885 -26.84344 -26.45251 -23.62241 -21.82518 -21.61086 -20.73487 -18.59708 -17.78937 -17.31832 -16.93012 -16.62506 -16.26927 -16.19116 -15.50788 -15.42045 -15.05212 -14.79441 -14.55269 -13.95733 -13.80110 -13.70374 -13.50077 -13.37646 -13.30603 -13.07071 -12.87304 -12.70823 -12.60174 -12.37565 -12.28434 -11.99630 -11.75322 -11.62627 -11.46151 -11.26299 -10.64284 -10.53261 -9.55347 -9.44447 -9.40111 -8.24994 -6.35287 0.42960 0.48569 1.37166 1.40964 1.49294 2.37520 2.46991 2.80985 3.06565 3.43233 3.46039 3.87974 3.96653 3.99400 4.05640 4.21325 4.27799 4.38264 4.48894 4.49113 4.52824 4.54737 4.66785 4.69199 4.79364 4.83552 4.87841 4.88940 4.92681 4.98348 4.99915 5.03410 5.06774 5.29833 5.40809 5.56623 5.63301 5.66369 5.74318 5.79400 6.08180 6.16115 6.34962 6.49450 6.78735 7.34169 8.85869 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028786 B = 0.003183 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.452596 B = 8795.240811 C = 9327.795944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.126 4.126 4 C -0.135 4.135 5 C -0.123 4.123 6 C -0.100 4.100 7 C 0.099 3.901 8 O -0.369 6.369 9 C 0.084 3.916 10 C -0.010 4.010 11 N -0.487 5.487 12 C 0.173 3.827 13 C -0.530 4.530 14 H 0.052 0.948 15 C 0.003 3.997 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.277 1.277 19 H -0.271 1.271 20 H -0.268 1.268 21 C -0.013 4.013 22 C -0.091 4.091 23 C -0.118 4.118 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.129 0.871 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.000 1.000 36 H -0.015 1.015 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.258 3.313 -5.137 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.153 4.153 5 C -0.141 4.141 6 C -0.100 4.100 7 C 0.024 3.976 8 O -0.288 6.288 9 C 0.026 3.974 10 C -0.139 4.139 11 N -0.209 5.209 12 C 0.046 3.954 13 C -0.568 4.568 14 H 0.071 0.929 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.143 4.143 22 C -0.091 4.091 23 C -0.174 4.174 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.018 0.982 36 H 0.003 0.997 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.912 4.119 -4.991 26.708 hybrid contribution 1.362 -0.625 0.538 1.592 sum -24.550 3.494 -4.453 25.194 Atomic orbital electron populations 1.20848 0.88953 1.03773 1.03160 1.20096 0.97568 0.92118 0.99935 1.21317 0.93816 0.98638 1.00652 1.21344 0.95135 0.98002 1.00844 1.21063 1.00210 0.92812 1.00007 1.19724 0.93576 0.94528 1.02202 1.21469 0.79873 0.94492 1.01809 1.87948 1.16680 1.29809 1.94353 1.23066 0.90624 0.88799 0.94960 1.24112 0.94082 1.00521 0.95178 1.68951 1.02299 1.44997 1.04699 1.19953 0.87420 0.92401 0.95665 1.21390 1.01092 1.20606 1.13687 0.92924 1.25923 0.97474 0.95836 1.00318 1.70058 1.13452 1.31522 1.42253 0.85429 0.77454 0.78731 0.78969 1.20194 1.19578 1.19259 1.24284 0.93793 0.97223 0.98981 1.19779 0.91843 0.96795 1.00689 1.20920 1.00486 0.92769 1.03253 0.90184 0.90319 0.90684 0.84087 0.85281 0.87184 0.89938 0.90878 0.86573 0.90082 0.90150 0.98235 0.99694 0.92487 0.90903 0.91172 0.90198 0.89604 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.19 71.24 0.65 -0.60 16 2 C -0.10 -1.81 5.88 -19.87 -0.12 -1.92 16 3 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 4 C -0.14 -3.27 10.05 22.27 0.22 -3.05 16 5 C -0.12 -3.51 9.38 22.27 0.21 -3.30 16 6 C -0.10 -2.53 5.88 -19.87 -0.12 -2.65 16 7 C 0.10 2.35 4.90 71.23 0.35 2.69 16 8 O -0.37 -11.76 8.88 -148.98 -1.32 -13.08 16 9 C 0.08 2.58 4.65 30.94 0.14 2.72 16 10 C -0.01 -0.36 7.52 83.58 0.63 0.27 16 11 N -0.49 -22.91 6.32 -932.85 -5.89 -28.80 16 12 C 0.17 9.66 4.57 85.55 0.39 10.05 16 13 C -0.53 -32.09 9.39 25.60 0.24 -31.85 16 14 H 0.05 3.22 7.81 -2.91 -0.02 3.19 16 15 C 0.00 0.15 5.46 84.66 0.46 0.62 16 16 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 17 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 21 C -0.01 -0.51 7.56 83.58 0.63 0.12 16 22 C -0.09 -1.84 5.88 -19.86 -0.12 -1.95 16 23 C -0.12 -1.56 8.78 71.24 0.63 -0.94 16 24 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 0.73 6.72 -2.39 -0.02 0.72 16 26 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 27 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.11 3.66 7.00 -2.91 -0.02 3.64 16 30 H 0.08 1.56 7.48 -2.39 -0.02 1.54 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 2.58 7.88 -2.38 -0.02 2.56 16 33 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.08 2.79 7.91 -2.39 -0.02 2.77 16 35 H 0.00 -0.03 8.08 -2.38 -0.02 -0.05 16 36 H -0.01 -0.85 7.30 -2.39 -0.02 -0.86 16 37 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.07 2.77 7.42 -2.39 -0.02 2.75 16 39 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 0.84 6.72 -2.39 -0.02 0.83 16 42 H 0.07 0.88 6.63 -2.39 -0.02 0.86 16 Total: -1.00 -71.99 342.28 0.51 -71.49 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.99 Total: 11.57 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 4.42 Total: -32.11 kcal Atomic # 7 Polarization: -80.34 SS G_CDS: -5.61 Total: -85.95 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.32 Total: -13.08 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -71.99 0.51 -71.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223032237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.965 kcal (2) G-P(sol) polarization free energy of solvation -71.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds