Wall clock time and date at job start Mon Mar 30 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46847 * 300.00671 * 3 2 1 6 6 H 1.48505 * 109.46863 * 60.00270 * 3 2 1 7 7 C 1.37875 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99872 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47321 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47219 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47219 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.47304 * 180.02562 * 12 11 10 14 14 C 1.42893 * 114.00335 * 179.20264 * 13 12 11 15 15 H 1.09008 * 109.46921 * 31.52113 * 14 13 12 16 16 C 1.50706 * 109.47175 * 271.52381 * 14 13 12 17 17 C 1.38666 * 120.41926 * 144.99377 * 16 14 13 18 18 C 1.38625 * 118.42002 * 179.97438 * 17 16 14 19 19 C 1.38230 * 119.15894 * 0.02562 * 18 17 16 20 20 N 1.31856 * 120.76542 * 359.97438 * 19 18 17 21 21 C 1.31886 * 121.72412 * 359.70347 * 20 19 18 22 22 C 1.52998 * 109.47583 * 151.51969 * 14 13 12 23 23 C 1.53001 * 117.49614 * 3.57695 * 22 14 13 24 24 C 1.53001 * 117.49696 * 294.91851 * 22 14 13 25 25 H 0.97008 * 120.00059 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47774 * 59.99733 * 9 7 2 27 27 H 1.09000 * 109.47110 * 299.99798 * 9 7 2 28 28 H 1.08993 * 109.46962 * 59.99894 * 10 9 7 29 29 H 1.09000 * 109.46905 * 299.99974 * 10 9 7 30 30 H 1.09001 * 109.47696 * 59.99892 * 11 10 9 31 31 H 1.09000 * 109.47289 * 299.99895 * 11 10 9 32 32 H 1.08993 * 109.46962 * 60.00051 * 12 11 10 33 33 H 1.09000 * 109.46905 * 300.00130 * 12 11 10 34 34 H 1.07999 * 120.79267 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.42677 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.61686 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.61747 * 180.31197 * 21 20 19 38 38 H 1.08999 * 115.55181 * 149.24480 * 22 14 13 39 39 H 1.09001 * 117.49747 * 0.02562 * 23 22 14 40 40 H 1.09001 * 117.49893 * 145.01757 * 23 22 14 41 41 H 1.09005 * 117.49775 * 214.97290 * 24 22 14 42 42 H 1.08998 * 117.50324 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 8 1.7597 -7.3876 -0.0018 14 6 2.5994 -8.5436 -0.0206 15 1 3.5284 -8.3265 0.5068 16 6 2.9075 -8.9177 -1.4476 17 6 4.1458 -9.4435 -1.7839 18 6 4.3846 -9.7736 -3.1089 19 6 3.3877 -9.5686 -4.0443 20 7 2.2217 -9.0662 -3.6882 21 6 1.9574 -8.7467 -2.4363 22 6 1.8820 -9.7065 0.6679 23 6 0.4483 -9.4682 1.1460 24 6 1.5878 -9.5692 2.1631 25 1 -0.4851 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8902 27 1 0.6246 -2.5571 0.8897 28 1 2.8724 -3.6048 0.8876 29 1 2.8711 -3.6040 -0.8923 30 1 0.8524 -5.0447 -0.8904 31 1 0.8544 -5.0450 0.8895 32 1 3.1015 -6.0923 0.8877 33 1 3.1003 -6.0924 -0.8923 34 1 4.9061 -9.5924 -1.0315 35 1 5.3373 -10.1858 -3.4068 36 1 3.5659 -9.8227 -5.0788 37 1 0.9890 -8.3422 -2.1817 38 1 2.1289 -10.6996 0.2927 39 1 0.0161 -8.4832 0.9696 40 1 -0.2479 -10.3048 1.0856 41 1 1.6408 -10.4721 2.7714 42 1 1.9057 -8.6506 2.6564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:12 Heat of formation + Delta-G solvation = -9.302078 kcal Electronic energy + Delta-G solvation = -20468.396897 eV Core-core repulsion = 17413.519760 eV Total energy + Delta-G solvation = -3054.877137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54677 -38.66760 -36.44773 -34.52910 -33.01844 -32.30086 -31.61548 -28.80875 -26.90950 -24.71582 -23.69530 -22.74304 -22.45120 -21.65957 -20.64069 -19.91345 -17.48799 -16.90546 -16.53622 -16.24722 -15.68490 -15.41856 -15.05439 -14.72317 -14.41986 -13.97155 -13.81205 -13.25388 -13.18376 -12.83325 -12.40949 -12.20205 -11.85988 -11.55318 -11.51219 -11.25041 -11.14961 -10.80220 -10.54613 -10.50952 -10.41757 -10.24748 -9.96632 -9.82205 -9.65412 -9.36775 -9.31883 -9.13893 -9.01618 -8.32968 -5.97739 -4.00107 0.92545 1.09803 3.32161 3.39128 3.40686 3.43878 3.62953 3.83751 4.22400 4.47799 4.51230 4.61993 4.68746 4.78803 4.82792 4.93433 4.94865 5.19376 5.26774 5.34048 5.38112 5.42006 5.54120 5.56041 5.63680 5.74044 5.77099 5.89930 5.97623 5.99916 6.10031 6.16711 6.22552 6.46939 6.54126 6.77824 6.91391 7.09128 7.29589 7.70725 7.84921 7.85428 8.02856 8.45157 9.07348 9.63846 11.13649 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.003287 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.469400 B = 8516.457509 C = 9395.406014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.062 3.938 13 O -0.371 6.371 14 C 0.165 3.835 15 H 0.072 0.928 16 C -0.158 4.158 17 C -0.070 4.070 18 C -0.177 4.177 19 C 0.095 3.905 20 N -0.486 5.486 21 C 0.129 3.871 22 C -0.157 4.157 23 C -0.160 4.160 24 C -0.175 4.175 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.304 -23.812 -0.911 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.152 4.152 12 C -0.014 4.014 13 O -0.290 6.290 14 C 0.106 3.894 15 H 0.090 0.910 16 C -0.161 4.161 17 C -0.097 4.097 18 C -0.197 4.197 19 C -0.062 4.062 20 N -0.194 5.194 21 C -0.028 4.028 22 C -0.175 4.175 23 C -0.197 4.197 24 C -0.212 4.212 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.311 -23.566 -1.554 24.446 hybrid contribution 1.517 0.809 0.550 1.805 sum 7.828 -22.758 -1.005 24.087 Atomic orbital electron populations 1.69980 1.06043 1.26445 1.50982 1.25032 0.94848 0.99250 0.95392 0.86553 0.80100 0.83870 0.77581 1.19775 1.21006 1.21009 1.21304 0.93040 0.91147 1.50379 0.92710 1.19091 0.93979 0.91177 0.97337 1.21572 0.99193 0.93502 1.00237 1.21630 0.98023 0.92811 1.02779 1.22766 0.95515 0.83426 0.99655 1.87941 1.33344 1.13154 1.94598 1.20179 0.93560 0.85973 0.89725 0.90968 1.21410 0.95150 1.01379 0.98116 1.21452 0.96064 0.95534 0.96603 1.22096 1.01015 1.02597 0.94004 1.22823 0.88865 0.94521 1.00005 1.67786 1.21406 1.10624 1.19583 1.22708 0.99426 0.93559 0.87120 1.22313 1.00640 0.97858 0.96702 1.22909 0.90523 1.04057 1.02200 1.22969 1.03942 1.03190 0.91052 0.93070 0.96522 0.96519 0.93386 0.93419 0.91643 0.91632 0.93494 0.93749 0.84969 0.84859 0.82916 0.82158 0.87208 0.87011 0.89200 0.88931 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 11 C -0.11 -1.99 5.58 -26.73 -0.15 -2.14 16 12 C 0.06 0.89 5.73 37.16 0.21 1.11 16 13 O -0.37 -4.91 7.54 -35.23 -0.27 -5.18 16 14 C 0.16 1.77 2.68 -27.88 -0.07 1.70 16 15 H 0.07 0.72 7.74 -51.92 -0.40 0.32 16 16 C -0.16 -1.75 4.88 -104.48 -0.51 -2.26 16 17 C -0.07 -0.65 9.84 -39.28 -0.39 -1.04 16 18 C -0.18 -1.54 10.11 -39.44 -0.40 -1.94 16 19 C 0.09 0.97 11.18 -17.54 -0.20 0.77 16 20 N -0.49 -6.33 10.36 -13.25 -0.14 -6.47 16 21 C 0.13 1.63 10.52 -17.55 -0.18 1.45 16 22 C -0.16 -1.50 5.72 -90.62 -0.52 -2.02 16 23 C -0.16 -1.59 9.87 -26.69 -0.26 -1.85 16 24 C -0.17 -1.58 10.24 -26.69 -0.27 -1.85 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.16 2.07 7.65 -52.49 -0.40 1.67 16 38 H 0.11 0.96 8.07 -51.93 -0.42 0.54 16 39 H 0.11 1.30 7.02 -51.93 -0.36 0.94 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -31.67 353.29 -9.84 -41.51 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.04 Total: -1.67 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -3.43 Total: -23.80 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.60 Total: -33.06 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.27 Total: -5.18 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.67 -9.84 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.209 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds