Wall clock time and date at job start Mon Mar 30 2020 01:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00303 * 2 1 4 4 H 1.48501 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46847 * 300.00671 * 3 2 1 6 6 H 1.48505 * 109.46863 * 60.00270 * 3 2 1 7 7 C 1.37875 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99872 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47321 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47219 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47219 * 180.02562 * 11 10 9 13 13 O 1.42901 * 109.47304 * 180.02562 * 12 11 10 14 14 C 1.42893 * 114.00335 * 179.20264 * 13 12 11 15 15 H 1.09008 * 109.46921 * 31.52113 * 14 13 12 16 16 C 1.50706 * 109.47175 * 271.52381 * 14 13 12 17 17 C 1.38666 * 120.41926 * 144.99377 * 16 14 13 18 18 C 1.38625 * 118.42002 * 179.97438 * 17 16 14 19 19 C 1.38230 * 119.15894 * 0.02562 * 18 17 16 20 20 N 1.31856 * 120.76542 * 359.97438 * 19 18 17 21 21 C 1.31886 * 121.72412 * 359.70347 * 20 19 18 22 22 C 1.52998 * 109.47583 * 151.51969 * 14 13 12 23 23 C 1.53001 * 117.49614 * 3.57695 * 22 14 13 24 24 C 1.53001 * 117.49696 * 294.91851 * 22 14 13 25 25 H 0.97008 * 120.00059 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47774 * 59.99733 * 9 7 2 27 27 H 1.09000 * 109.47110 * 299.99798 * 9 7 2 28 28 H 1.08993 * 109.46962 * 59.99894 * 10 9 7 29 29 H 1.09000 * 109.46905 * 299.99974 * 10 9 7 30 30 H 1.09001 * 109.47696 * 59.99892 * 11 10 9 31 31 H 1.09000 * 109.47289 * 299.99895 * 11 10 9 32 32 H 1.08993 * 109.46962 * 60.00051 * 12 11 10 33 33 H 1.09000 * 109.46905 * 300.00130 * 12 11 10 34 34 H 1.07999 * 120.79267 * 359.97438 * 17 16 14 35 35 H 1.08000 * 120.42677 * 180.02562 * 18 17 16 36 36 H 1.08005 * 119.61686 * 179.97438 * 19 18 17 37 37 H 1.07997 * 119.61747 * 180.31197 * 21 20 19 38 38 H 1.08999 * 115.55181 * 149.24480 * 22 14 13 39 39 H 1.09001 * 117.49747 * 0.02562 * 23 22 14 40 40 H 1.09001 * 117.49893 * 145.01757 * 23 22 14 41 41 H 1.09005 * 117.49775 * 214.97290 * 24 22 14 42 42 H 1.08998 * 117.50324 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 8 1.7597 -7.3876 -0.0018 14 6 2.5994 -8.5436 -0.0206 15 1 3.5284 -8.3265 0.5068 16 6 2.9075 -8.9177 -1.4476 17 6 4.1458 -9.4435 -1.7839 18 6 4.3846 -9.7736 -3.1089 19 6 3.3877 -9.5686 -4.0443 20 7 2.2217 -9.0662 -3.6882 21 6 1.9574 -8.7467 -2.4363 22 6 1.8820 -9.7065 0.6679 23 6 0.4483 -9.4682 1.1460 24 6 1.5878 -9.5692 2.1631 25 1 -0.4851 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8902 27 1 0.6246 -2.5571 0.8897 28 1 2.8724 -3.6048 0.8876 29 1 2.8711 -3.6040 -0.8923 30 1 0.8524 -5.0447 -0.8904 31 1 0.8544 -5.0450 0.8895 32 1 3.1015 -6.0923 0.8877 33 1 3.1003 -6.0924 -0.8923 34 1 4.9061 -9.5924 -1.0315 35 1 5.3373 -10.1858 -3.4068 36 1 3.5659 -9.8227 -5.0788 37 1 0.9890 -8.3422 -2.1817 38 1 2.1289 -10.6996 0.2927 39 1 0.0161 -8.4832 0.9696 40 1 -0.2479 -10.3048 1.0856 41 1 1.6408 -10.4721 2.7714 42 1 1.9057 -8.6506 2.6564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:11 Heat of formation + Delta-G solvation = -25.919317 kcal Electronic energy + Delta-G solvation = -20469.117474 eV Core-core repulsion = 17413.519760 eV Total energy + Delta-G solvation = -3055.597715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35704 -39.56845 -37.46696 -36.20871 -34.38653 -33.69342 -32.47954 -30.51827 -27.90327 -26.46616 -24.52297 -23.62419 -23.40873 -22.98608 -21.94206 -21.15839 -18.45740 -18.28459 -17.81252 -17.37261 -16.63314 -16.57470 -16.46856 -16.04855 -15.47811 -15.08754 -14.71847 -14.54123 -14.23733 -13.95856 -13.92516 -13.66133 -13.17536 -12.93398 -12.75354 -12.60893 -12.35286 -12.31543 -12.27454 -11.98052 -11.51958 -11.36385 -11.29996 -11.10636 -11.02958 -10.77488 -10.69921 -10.57036 -10.23463 -9.92794 -8.20774 -6.32498 0.14635 0.34430 1.39437 1.40086 1.53511 2.39269 2.50439 2.83058 3.01548 3.12238 3.46140 3.72998 3.88889 3.93139 4.04859 4.05571 4.12129 4.16409 4.21599 4.23863 4.38204 4.44466 4.55676 4.59053 4.67766 4.73116 4.85816 4.87227 4.88180 5.04418 5.15193 5.18529 5.21055 5.25852 5.27002 5.31075 5.40223 5.52124 5.73970 5.78441 5.84735 6.23145 6.26114 6.85070 7.04639 7.37043 8.91500 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.003287 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.469400 B = 8516.457509 C = 9395.406014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.075 3.925 13 O -0.383 6.383 14 C 0.162 3.838 15 H 0.088 0.912 16 C -0.163 4.163 17 C -0.071 4.071 18 C -0.167 4.167 19 C 0.081 3.919 20 N -0.520 5.520 21 C 0.103 3.897 22 C -0.153 4.153 23 C -0.174 4.174 24 C -0.164 4.164 25 H 0.264 0.736 26 H -0.012 1.012 27 H -0.008 1.008 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -24.871 -0.542 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.145 4.145 12 C -0.001 4.001 13 O -0.303 6.303 14 C 0.104 3.896 15 H 0.106 0.894 16 C -0.166 4.166 17 C -0.096 4.096 18 C -0.187 4.187 19 C -0.076 4.076 20 N -0.229 5.229 21 C -0.053 4.053 22 C -0.171 4.171 23 C -0.211 4.211 24 C -0.201 4.201 25 H 0.072 0.928 26 H 0.006 0.994 27 H 0.010 0.990 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.180 0.820 35 H 0.186 0.814 36 H 0.193 0.807 37 H 0.160 0.840 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.200 -24.642 -1.181 26.330 hybrid contribution 0.592 1.076 0.393 1.289 sum 9.791 -23.566 -0.789 25.531 Atomic orbital electron populations 1.70118 1.07908 1.27737 1.51748 1.26036 0.95799 1.03553 0.94708 0.85365 0.79100 0.78562 0.77811 1.18405 1.20418 1.20232 1.21753 0.93620 0.92372 1.50443 0.92008 1.19021 0.94503 0.93251 0.94727 1.21344 0.98020 0.92946 1.00841 1.21428 0.98246 0.92872 1.01929 1.22474 0.94277 0.82945 1.00437 1.87929 1.34151 1.13478 1.94730 1.20370 0.93941 0.85226 0.90062 0.89410 1.21427 0.95696 1.01815 0.97633 1.21837 0.95719 0.94398 0.97684 1.22485 1.01792 1.01008 0.93373 1.23324 0.88465 0.94150 1.01671 1.67714 1.23290 1.11958 1.19935 1.22553 0.99565 0.95238 0.87913 1.22341 0.99866 0.97897 0.97018 1.22876 0.91251 1.03280 1.03704 1.23023 1.02480 1.03747 0.90848 0.92764 0.99397 0.98970 0.92315 0.93048 0.92977 0.92119 0.91840 0.93673 0.82021 0.81353 0.80685 0.84029 0.85936 0.89354 0.88127 0.86946 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.92 5.15 30.59 0.16 -3.76 16 11 C -0.11 -3.79 5.58 30.59 0.17 -3.62 16 12 C 0.07 2.09 5.73 71.98 0.41 2.50 16 13 O -0.38 -10.11 7.54 -148.98 -1.12 -11.23 16 14 C 0.16 3.27 2.68 29.85 0.08 3.35 16 15 H 0.09 1.50 7.74 -2.38 -0.02 1.48 16 16 C -0.16 -3.41 4.88 -19.77 -0.10 -3.51 16 17 C -0.07 -1.10 9.84 22.46 0.22 -0.88 16 18 C -0.17 -2.40 10.11 22.36 0.23 -2.17 16 19 C 0.08 1.53 11.18 84.69 0.95 2.47 16 20 N -0.52 -13.65 10.36 -195.84 -2.03 -15.68 16 21 C 0.10 2.69 10.52 84.67 0.89 3.58 16 22 C -0.15 -2.69 5.72 -10.79 -0.06 -2.75 16 23 C -0.17 -3.41 9.87 30.62 0.30 -3.11 16 24 C -0.16 -2.69 10.24 30.62 0.31 -2.38 16 25 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.75 16 27 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 33 H 0.04 1.25 8.12 -2.39 -0.02 1.24 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.14 3.99 7.65 -2.91 -0.02 3.97 16 38 H 0.12 1.86 8.07 -2.39 -0.02 1.84 16 39 H 0.09 2.16 7.02 -2.39 -0.02 2.14 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -70.02 353.29 4.53 -65.49 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.97 Total: 12.63 kcal Atomic # 6 Polarization: -44.54 SS G_CDS: 4.41 Total: -40.14 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.74 Total: -73.67 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.12 Total: -11.23 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.02 4.53 -65.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.571 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds