Wall clock time and date at job start Mon Mar 30 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99674 * 2 1 4 4 H 1.48506 * 109.46839 * 269.99702 * 3 2 1 5 5 H 1.48497 * 109.47242 * 29.99500 * 3 2 1 6 6 H 1.48498 * 109.47037 * 150.00181 * 3 2 1 7 7 C 1.37872 * 120.00539 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46857 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46857 * 180.02562 * 11 10 9 13 13 O 1.42908 * 109.47096 * 179.97438 * 12 11 10 14 14 C 1.42896 * 113.99962 * 184.77427 * 13 12 11 15 15 H 1.09005 * 109.47123 * 327.22575 * 14 13 12 16 16 C 1.50698 * 109.47254 * 87.22213 * 14 13 12 17 17 C 1.38668 * 120.41799 * 220.25905 * 16 14 13 18 18 C 1.38635 * 118.41546 * 180.22009 * 17 16 14 19 19 C 1.38227 * 119.16457 * 359.48175 * 18 17 16 20 20 N 1.31856 * 120.75898 * 0.30001 * 19 18 17 21 21 C 1.31877 * 121.72884 * 359.97368 * 20 19 18 22 22 C 1.53003 * 109.47130 * 207.22631 * 14 13 12 23 23 C 1.52995 * 117.50036 * 131.51608 * 22 14 13 24 24 C 1.53002 * 117.50062 * 62.85257 * 22 14 13 25 25 H 0.97001 * 120.00511 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47114 * 59.99389 * 9 7 2 27 27 H 1.09006 * 109.47017 * 300.00196 * 9 7 2 28 28 H 1.08995 * 109.46782 * 59.99666 * 10 9 7 29 29 H 1.08995 * 109.46748 * 299.99771 * 10 9 7 30 30 H 1.09003 * 109.47378 * 60.00101 * 11 10 9 31 31 H 1.09002 * 109.47683 * 299.99642 * 11 10 9 32 32 H 1.08995 * 109.47496 * 60.00346 * 12 11 10 33 33 H 1.09002 * 109.46987 * 299.99537 * 12 11 10 34 34 H 1.07998 * 120.79227 * 359.97438 * 17 16 14 35 35 H 1.08002 * 120.41613 * 179.75480 * 18 17 16 36 36 H 1.07998 * 119.61826 * 180.27842 * 19 18 17 37 37 H 1.08002 * 119.61845 * 180.02562 * 21 20 19 38 38 H 1.09005 * 115.54777 * 277.17994 * 22 14 13 39 39 H 1.09000 * 117.49844 * 359.97438 * 23 22 14 40 40 H 1.09001 * 117.50313 * 145.02246 * 23 22 14 41 41 H 1.08998 * 117.49263 * 214.98039 * 24 22 14 42 42 H 1.08997 * 117.49507 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0018 13 8 1.7602 -7.3875 0.0030 14 6 2.5963 -8.5412 0.1124 15 1 3.5468 -8.3496 -0.3856 16 6 2.8440 -8.8461 1.5673 17 6 4.0988 -9.2516 1.9959 18 6 4.2792 -9.5256 3.3428 19 6 3.2127 -9.3762 4.2094 20 7 2.0341 -8.9841 3.7669 21 6 1.8248 -8.7199 2.4919 22 6 1.9059 -9.7359 -0.5488 23 6 2.7293 -10.5742 -1.5286 24 6 1.6275 -9.6486 -2.0507 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6042 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0450 -0.8886 31 1 0.8541 -5.0446 0.8914 32 1 3.1013 -6.0918 0.8918 33 1 3.1014 -6.0926 -0.8882 34 1 4.9152 -9.3553 1.2964 35 1 5.2421 -9.8476 3.7112 36 1 3.3462 -9.5834 5.2609 37 1 0.8457 -8.4005 2.1667 38 1 1.1750 -10.2576 0.0692 39 1 3.7627 -10.2743 -1.7026 40 1 2.5398 -11.6472 -1.5558 41 1 0.7136 -10.1131 -2.4209 42 1 1.9357 -8.7399 -2.5677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224689780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:15 Heat of formation + Delta-G solvation = -9.660916 kcal Electronic energy + Delta-G solvation = -20381.216846 eV Core-core repulsion = 17326.324149 eV Total energy + Delta-G solvation = -3054.892697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.54151 -38.58828 -36.68094 -34.56619 -32.96456 -32.30900 -31.61581 -28.82944 -26.80896 -24.67649 -23.72624 -22.79410 -22.50663 -21.67585 -20.75761 -19.93766 -17.44249 -17.03020 -16.39074 -16.23866 -15.88583 -15.34714 -15.18316 -14.62227 -14.41405 -13.96447 -13.78514 -13.37369 -13.25153 -12.81823 -12.40356 -12.13442 -11.88316 -11.74978 -11.47750 -11.22108 -11.14053 -10.79363 -10.59408 -10.54207 -10.49714 -10.33891 -9.98011 -9.80781 -9.64400 -9.39084 -9.30524 -9.15285 -9.01917 -8.32114 -5.96991 -3.99503 0.92010 1.10233 3.24470 3.33347 3.39454 3.42894 3.64010 3.86843 4.24236 4.47772 4.51995 4.60752 4.61566 4.75290 4.80491 4.82838 4.92262 5.05717 5.24327 5.35081 5.38632 5.38836 5.41882 5.54741 5.62714 5.68843 5.75814 5.85226 5.89713 5.97192 5.99513 6.11149 6.18499 6.48142 6.53614 6.79033 6.92604 7.10043 7.31175 7.71200 7.84373 7.86303 8.03551 8.45707 9.07732 9.64328 11.14364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019112 B = 0.003240 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.723921 B = 8639.587523 C = 9521.237590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.063 3.937 13 O -0.370 6.370 14 C 0.166 3.834 15 H 0.068 0.932 16 C -0.159 4.159 17 C -0.067 4.067 18 C -0.177 4.177 19 C 0.096 3.904 20 N -0.485 5.485 21 C 0.127 3.873 22 C -0.148 4.148 23 C -0.175 4.175 24 C -0.162 4.162 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 -24.055 1.172 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.014 4.014 13 O -0.289 6.289 14 C 0.107 3.893 15 H 0.086 0.914 16 C -0.161 4.161 17 C -0.093 4.093 18 C -0.197 4.197 19 C -0.061 4.061 20 N -0.194 5.194 21 C -0.030 4.030 22 C -0.166 4.166 23 C -0.212 4.212 24 C -0.199 4.199 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.178 0.822 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.029 -23.846 1.764 24.922 hybrid contribution 1.512 0.899 -0.481 1.824 sum 8.541 -22.946 1.283 24.518 Atomic orbital electron populations 1.69965 1.06044 1.26561 1.50887 1.25029 0.94847 0.99232 0.95390 0.86607 0.79847 0.83548 0.78068 1.20678 1.21212 1.19914 1.21268 0.92999 0.91162 1.50512 0.92765 1.19090 0.93979 0.91151 0.97350 1.21572 0.99194 0.93516 1.00216 1.21633 0.98032 0.92774 1.02830 1.22762 0.95528 0.83504 0.99557 1.87982 1.33700 1.13145 1.94066 1.20262 0.93672 0.85927 0.89485 0.91376 1.21403 0.94870 1.01779 0.98028 1.21450 0.96428 0.95477 0.95994 1.22103 1.00761 1.02596 0.94210 1.22820 0.88333 0.94714 1.00262 1.67774 1.23863 1.11013 1.16718 1.22699 0.99487 0.93250 0.87597 1.22183 1.03344 0.98228 0.92863 1.23030 0.97008 0.97739 1.03467 1.22884 0.99972 1.01610 0.95454 0.93010 0.96515 0.96509 0.93450 0.93371 0.91559 0.91668 0.93808 0.93535 0.85049 0.84834 0.82879 0.82216 0.87300 0.88769 0.88500 0.88499 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.12 -2.04 5.58 -26.73 -0.15 -2.19 16 12 C 0.06 0.92 5.72 37.16 0.21 1.13 16 13 O -0.37 -5.13 9.30 -35.23 -0.33 -5.46 16 14 C 0.17 1.82 2.50 -27.88 -0.07 1.75 16 15 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 16 C -0.16 -1.78 4.80 -104.48 -0.50 -2.28 16 17 C -0.07 -0.64 9.82 -39.28 -0.39 -1.02 16 18 C -0.18 -1.57 10.11 -39.44 -0.40 -1.96 16 19 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 20 N -0.49 -6.35 10.36 -13.25 -0.14 -6.49 16 21 C 0.13 1.61 10.53 -17.55 -0.18 1.43 16 22 C -0.15 -1.42 5.34 -90.62 -0.48 -1.91 16 23 C -0.18 -1.34 10.18 -26.69 -0.27 -1.62 16 24 C -0.16 -1.46 10.20 -26.69 -0.27 -1.73 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.64 8.03 -51.93 -0.42 0.22 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.16 2.04 7.79 -52.49 -0.41 1.63 16 38 H 0.11 1.06 8.13 -51.93 -0.42 0.64 16 39 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -32.07 355.65 -9.87 -41.94 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.10 Total: -2.20 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -3.39 Total: -23.40 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.60 Total: -33.15 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.33 Total: -5.46 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.07 -9.87 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.279 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds