Wall clock time and date at job start Mon Mar 30 2020 01:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99674 * 2 1 4 4 H 1.48506 * 109.46839 * 269.99702 * 3 2 1 5 5 H 1.48497 * 109.47242 * 29.99500 * 3 2 1 6 6 H 1.48498 * 109.47037 * 150.00181 * 3 2 1 7 7 C 1.37872 * 120.00539 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00312 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99751 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46857 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46857 * 180.02562 * 11 10 9 13 13 O 1.42908 * 109.47096 * 179.97438 * 12 11 10 14 14 C 1.42896 * 113.99962 * 184.77427 * 13 12 11 15 15 H 1.09005 * 109.47123 * 327.22575 * 14 13 12 16 16 C 1.50698 * 109.47254 * 87.22213 * 14 13 12 17 17 C 1.38668 * 120.41799 * 220.25905 * 16 14 13 18 18 C 1.38635 * 118.41546 * 180.22009 * 17 16 14 19 19 C 1.38227 * 119.16457 * 359.48175 * 18 17 16 20 20 N 1.31856 * 120.75898 * 0.30001 * 19 18 17 21 21 C 1.31877 * 121.72884 * 359.97368 * 20 19 18 22 22 C 1.53003 * 109.47130 * 207.22631 * 14 13 12 23 23 C 1.52995 * 117.50036 * 131.51608 * 22 14 13 24 24 C 1.53002 * 117.50062 * 62.85257 * 22 14 13 25 25 H 0.97001 * 120.00511 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47114 * 59.99389 * 9 7 2 27 27 H 1.09006 * 109.47017 * 300.00196 * 9 7 2 28 28 H 1.08995 * 109.46782 * 59.99666 * 10 9 7 29 29 H 1.08995 * 109.46748 * 299.99771 * 10 9 7 30 30 H 1.09003 * 109.47378 * 60.00101 * 11 10 9 31 31 H 1.09002 * 109.47683 * 299.99642 * 11 10 9 32 32 H 1.08995 * 109.47496 * 60.00346 * 12 11 10 33 33 H 1.09002 * 109.46987 * 299.99537 * 12 11 10 34 34 H 1.07998 * 120.79227 * 359.97438 * 17 16 14 35 35 H 1.08002 * 120.41613 * 179.75480 * 18 17 16 36 36 H 1.07998 * 119.61826 * 180.27842 * 19 18 17 37 37 H 1.08002 * 119.61845 * 180.02562 * 21 20 19 38 38 H 1.09005 * 115.54777 * 277.17994 * 22 14 13 39 39 H 1.09000 * 117.49844 * 359.97438 * 23 22 14 40 40 H 1.09001 * 117.50313 * 145.02246 * 23 22 14 41 41 H 1.08998 * 117.49263 * 214.98039 * 24 22 14 42 42 H 1.08997 * 117.49507 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0018 13 8 1.7602 -7.3875 0.0030 14 6 2.5963 -8.5412 0.1124 15 1 3.5468 -8.3496 -0.3856 16 6 2.8440 -8.8461 1.5673 17 6 4.0988 -9.2516 1.9959 18 6 4.2792 -9.5256 3.3428 19 6 3.2127 -9.3762 4.2094 20 7 2.0341 -8.9841 3.7669 21 6 1.8248 -8.7199 2.4919 22 6 1.9059 -9.7359 -0.5488 23 6 2.7293 -10.5742 -1.5286 24 6 1.6275 -9.6486 -2.0507 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6042 0.8905 29 1 2.8720 -3.6042 -0.8894 30 1 0.8534 -5.0450 -0.8886 31 1 0.8541 -5.0446 0.8914 32 1 3.1013 -6.0918 0.8918 33 1 3.1014 -6.0926 -0.8882 34 1 4.9152 -9.3553 1.2964 35 1 5.2421 -9.8476 3.7112 36 1 3.3462 -9.5834 5.2609 37 1 0.8457 -8.4005 2.1667 38 1 1.1750 -10.2576 0.0692 39 1 3.7627 -10.2743 -1.7026 40 1 2.5398 -11.6472 -1.5558 41 1 0.7136 -10.1131 -2.4209 42 1 1.9357 -8.7399 -2.5677 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224689780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:14 Heat of formation + Delta-G solvation = -26.869356 kcal Electronic energy + Delta-G solvation = -20381.963060 eV Core-core repulsion = 17326.324149 eV Total energy + Delta-G solvation = -3055.638911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35520 -39.48580 -37.62831 -36.27999 -34.39855 -33.64732 -32.49904 -30.53999 -27.83914 -26.40382 -24.57148 -23.70303 -23.19476 -23.12029 -21.99505 -21.25233 -18.45051 -18.22030 -17.96150 -17.26298 -16.74718 -16.56227 -16.51677 -16.05929 -15.40783 -15.10441 -14.70750 -14.54885 -14.31612 -13.98017 -13.87140 -13.70781 -13.18519 -12.88297 -12.82707 -12.50269 -12.39642 -12.35418 -12.26551 -11.95008 -11.51590 -11.38929 -11.32101 -11.24178 -11.01360 -10.79568 -10.70679 -10.56301 -10.27772 -9.94775 -8.20437 -6.32402 0.13084 0.33635 1.39437 1.41477 1.52566 2.35857 2.42850 2.83918 3.10026 3.12410 3.46271 3.71867 3.85081 3.89953 4.03447 4.04644 4.08017 4.13844 4.18525 4.22698 4.30811 4.43133 4.56539 4.59517 4.64688 4.73554 4.80488 4.85907 4.86876 5.03630 5.14766 5.16006 5.20649 5.23136 5.25587 5.27118 5.30242 5.51892 5.73857 5.77281 5.84661 6.23075 6.26192 6.84971 7.03114 7.37103 8.91667 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019112 B = 0.003240 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.723921 B = 8639.587523 C = 9521.237590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.108 4.108 12 C 0.075 3.925 13 O -0.387 6.387 14 C 0.166 3.834 15 H 0.085 0.915 16 C -0.164 4.164 17 C -0.069 4.069 18 C -0.167 4.167 19 C 0.081 3.919 20 N -0.519 5.519 21 C 0.101 3.899 22 C -0.163 4.163 23 C -0.152 4.152 24 C -0.172 4.172 25 H 0.264 0.736 26 H -0.008 1.008 27 H -0.013 1.013 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.143 0.857 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.140 -24.935 0.876 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.131 4.131 11 C -0.146 4.146 12 C -0.001 4.001 13 O -0.306 6.306 14 C 0.107 3.893 15 H 0.102 0.898 16 C -0.166 4.166 17 C -0.095 4.095 18 C -0.186 4.186 19 C -0.076 4.076 20 N -0.228 5.228 21 C -0.055 4.055 22 C -0.181 4.181 23 C -0.189 4.189 24 C -0.209 4.209 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.006 0.994 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.179 0.821 35 H 0.187 0.813 36 H 0.194 0.806 37 H 0.160 0.840 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.100 -24.747 1.463 26.769 hybrid contribution 0.526 1.102 -0.352 1.271 sum 10.627 -23.644 1.111 25.946 Atomic orbital electron populations 1.70109 1.07930 1.27817 1.51673 1.26043 0.95798 1.03573 0.94688 0.85409 0.78632 0.78183 0.78595 1.19561 1.20785 1.18609 1.21726 0.93633 0.92354 1.50572 0.91957 1.19022 0.94510 0.93265 0.94717 1.21343 0.98017 0.92873 1.00883 1.21442 0.98286 0.92944 1.01910 1.22481 0.94288 0.82932 1.00441 1.87953 1.34809 1.13640 1.94223 1.20434 0.94006 0.85055 0.89769 0.89758 1.21434 0.95363 1.02125 0.97710 1.21838 0.96263 0.94414 0.96956 1.22494 1.01631 1.00800 0.93715 1.23328 0.88014 0.94377 1.01835 1.67705 1.25764 1.12305 1.17033 1.22566 0.99629 0.95043 0.88289 1.22147 1.04394 0.98508 0.93041 1.23134 0.97129 0.98116 1.00520 1.22925 1.01105 1.02058 0.94821 0.92755 0.98994 0.99416 0.93017 0.92226 0.92114 0.93070 0.93592 0.91803 0.82116 0.81312 0.80610 0.83968 0.88191 0.87389 0.87120 0.88111 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.44 13.29 21.44 0.28 -58.16 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.11 -3.90 5.58 30.59 0.17 -3.72 16 12 C 0.07 2.13 5.72 71.98 0.41 2.54 16 13 O -0.39 -10.67 9.30 -148.98 -1.38 -12.05 16 14 C 0.17 3.43 2.50 29.85 0.07 3.51 16 15 H 0.08 1.46 7.53 -2.38 -0.02 1.44 16 16 C -0.16 -3.52 4.80 -19.77 -0.09 -3.62 16 17 C -0.07 -1.11 9.82 22.47 0.22 -0.89 16 18 C -0.17 -2.47 10.11 22.36 0.23 -2.24 16 19 C 0.08 1.57 11.18 84.69 0.95 2.51 16 20 N -0.52 -13.78 10.36 -195.84 -2.03 -15.81 16 21 C 0.10 2.66 10.53 84.67 0.89 3.55 16 22 C -0.16 -2.97 5.34 -10.79 -0.06 -3.02 16 23 C -0.15 -1.95 10.18 30.62 0.31 -1.64 16 24 C -0.17 -2.90 10.20 30.62 0.31 -2.58 16 25 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 27 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 28 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.29 8.03 -2.39 -0.02 1.27 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 35 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.14 4.01 7.79 -2.91 -0.02 3.98 16 38 H 0.10 1.97 8.13 -2.38 -0.02 1.96 16 39 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.85 355.65 4.28 -66.58 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.96 Total: 11.87 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 4.42 Total: -39.36 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -1.74 Total: -73.96 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.38 Total: -12.05 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.85 4.28 -66.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224689780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.707 kcal (2) G-P(sol) polarization free energy of solvation -70.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds