Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38215 * 119.99743 * 359.94741 * 5 4 3 7 7 C 1.50706 * 119.99804 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46692 * 90.00474 * 7 6 5 9 9 O 1.42905 * 109.46956 * 179.97438 * 8 7 6 10 10 C 1.42901 * 113.99865 * 180.02562 * 9 8 7 11 11 H 1.09005 * 110.64299 * 31.68626 * 10 9 8 12 12 C 1.55159 * 110.71934 * 155.02568 * 10 9 8 13 13 C 1.54911 * 101.58262 * 153.86501 * 12 10 9 14 14 N 1.47429 * 104.82845 * 322.98718 * 13 12 10 15 15 C 1.36942 * 125.64682 * 204.09049 * 14 13 12 16 16 H 1.07994 * 119.99585 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00034 * 0.04688 * 15 14 13 18 18 N 1.31618 * 119.99862 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47457 * 119.99983 * 19 17 15 22 22 H 1.48498 * 109.46958 * 239.99947 * 19 17 15 23 23 C 1.47021 * 108.70211 * 24.13079 * 14 13 12 24 24 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 25 25 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 26 26 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 27 27 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 28 28 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 30 30 H 1.08005 * 120.00210 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47054 * 210.00380 * 7 6 5 32 32 H 1.08992 * 109.47376 * 330.00578 * 7 6 5 33 33 H 1.08995 * 109.47453 * 300.00033 * 8 7 6 34 34 H 1.09005 * 109.47419 * 60.00068 * 8 7 6 35 35 H 1.09004 * 111.00169 * 271.94037 * 12 10 9 36 36 H 1.08995 * 111.00506 * 35.78679 * 12 10 9 37 37 H 1.09000 * 110.36528 * 204.15568 * 13 12 10 38 38 H 1.08996 * 110.45899 * 81.87251 * 13 12 10 39 39 H 0.96998 * 120.00147 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88306 * 239.51360 * 23 14 13 41 41 H 1.09008 * 110.00717 * 118.42896 * 23 14 13 42 42 H 1.07999 * 119.99936 * 0.04181 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0008 7 6 4.3343 -2.5019 0.0001 8 6 4.5847 -2.9469 1.4423 9 8 5.2988 -4.1847 1.4417 10 6 5.5848 -4.6914 2.7469 11 1 4.8001 -4.4094 3.4490 12 6 5.7663 -6.2319 2.7101 13 6 6.6880 -6.4658 3.9330 14 7 7.6049 -5.3114 3.9406 15 6 8.8501 -5.2850 4.5099 16 1 9.4468 -4.3862 4.4618 17 6 9.3455 -6.4137 5.1484 18 7 8.6181 -7.5090 5.2070 19 14 11.0442 -6.3779 5.9243 20 1 11.6529 -5.0386 5.7215 21 1 10.9302 -6.6552 7.3787 22 1 11.9005 -7.4115 5.2889 23 6 6.9607 -4.1930 3.2367 24 6 2.1981 -1.1969 -0.0045 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 0.0101 30 1 5.3517 0.0002 0.0099 31 1 3.7468 -3.2604 -0.5174 32 1 5.2882 -2.3703 -0.5104 33 1 5.1721 -2.1885 1.9598 34 1 3.6307 -3.0785 1.9529 35 1 4.8109 -6.7410 2.8379 36 1 6.2541 -6.5459 1.7874 37 1 7.2474 -7.3938 3.8144 38 1 6.1025 -6.4913 4.8520 39 1 8.9643 -8.2979 5.6528 40 1 7.5702 -3.8906 2.3851 41 1 6.8295 -3.3506 3.9160 42 1 1.6581 -2.1322 -0.0088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224868871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = -8.646092 kcal Electronic energy + Delta-G solvation = -20398.452338 eV Core-core repulsion = 17343.603646 eV Total energy + Delta-G solvation = -3054.848691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.69696 -38.32160 -36.04666 -33.95503 -32.44653 -31.98107 -29.39233 -28.62340 -27.13406 -26.85761 -24.42064 -23.41936 -22.12885 -20.62431 -20.09515 -20.00887 -16.98118 -16.70345 -16.46220 -15.85894 -15.05975 -14.84168 -14.73745 -14.35002 -14.04952 -13.83156 -13.37147 -13.26195 -12.98242 -12.61929 -12.39127 -12.31243 -12.09876 -11.68835 -11.51334 -11.27264 -11.23017 -11.06693 -10.95201 -10.78243 -10.68521 -10.25336 -10.06880 -9.74934 -9.51985 -9.07188 -8.95884 -8.75924 -8.64013 -6.81865 -5.63855 -3.05585 1.15509 1.20864 3.41256 3.46363 3.49128 3.51320 3.97853 4.51257 4.58404 4.65111 4.80842 4.96470 5.06795 5.09593 5.27100 5.31131 5.34370 5.43480 5.46743 5.50406 5.52184 5.53944 5.57670 5.79134 5.79757 5.82522 5.92496 5.99573 6.05069 6.29419 6.37745 6.39028 6.50104 6.56507 6.62055 6.69156 6.76128 6.84573 7.51483 7.64767 7.68081 7.87202 8.37368 9.23446 9.84170 10.48841 11.40434 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035734 B = 0.002886 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.383716 B = 9700.436379 C =10171.238294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.073 4.073 7 C -0.080 4.080 8 C 0.069 3.931 9 O -0.379 6.379 10 C 0.077 3.923 11 H 0.062 0.938 12 C -0.137 4.137 13 C 0.152 3.848 14 N -0.602 5.602 15 C -0.220 4.220 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.923 5.923 19 Si 0.916 3.084 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.117 3.883 24 C -0.116 4.116 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.013 0.987 39 H 0.252 0.748 40 H 0.033 0.967 41 H 0.019 0.981 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.126 14.103 -11.156 23.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.138 4.138 6 C -0.073 4.073 7 C -0.117 4.117 8 C -0.008 4.008 9 O -0.298 6.298 10 C 0.019 3.981 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.348 4.348 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.572 5.572 19 Si 0.746 3.254 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C -0.010 4.010 24 C -0.134 4.134 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.037 0.963 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.928 13.884 -11.206 23.263 hybrid contribution 0.771 0.298 0.740 1.110 sum -14.157 14.182 -10.465 22.607 Atomic orbital electron populations 1.20791 0.91254 1.02796 1.02260 1.19914 0.96041 0.93168 0.99656 1.21018 0.94312 0.97411 1.01741 1.21133 0.94289 0.98003 0.99903 1.21120 1.00119 0.91948 1.00576 1.19787 0.93636 0.94785 0.99122 1.20495 1.00734 0.93587 0.96901 1.22377 0.95440 0.87035 0.95984 1.87897 1.76004 1.37212 1.28688 1.23236 0.96191 0.95682 0.83012 0.92033 1.23137 1.00229 0.92236 1.01951 1.21962 0.89702 0.94600 0.91015 1.44406 1.15435 1.08420 1.64685 1.19142 0.90400 0.97821 1.27485 0.90411 1.24801 0.98857 0.96004 1.01159 1.69791 1.36356 1.02555 1.48535 0.85973 0.83419 0.77319 0.78652 1.20528 1.21752 1.21698 1.21710 0.92317 0.91746 0.95202 1.20973 0.93547 0.97680 1.01172 0.91235 0.91476 0.91614 0.86302 0.86058 0.85856 0.90199 0.90023 0.93360 0.93670 0.92022 0.91121 0.87178 0.96851 0.93745 0.94914 0.96309 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.42 16 2 C -0.09 -0.82 5.88 -104.63 -0.62 -1.44 16 3 C -0.13 -1.15 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 5 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 6 C -0.07 -0.81 5.13 -104.62 -0.54 -1.34 16 7 C -0.08 -0.93 5.71 -27.88 -0.16 -1.09 16 8 C 0.07 0.96 5.79 37.16 0.22 1.17 16 9 O -0.38 -6.67 10.07 -35.23 -0.35 -7.02 16 10 C 0.08 1.48 3.40 -24.90 -0.08 1.39 16 11 H 0.06 1.11 7.88 -51.93 -0.41 0.70 16 12 C -0.14 -2.79 6.81 -24.58 -0.17 -2.96 16 13 C 0.15 3.82 5.89 -2.53 -0.01 3.81 16 14 N -0.60 -16.17 3.39 -170.07 -0.58 -16.75 16 15 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 16 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -27.36 10.09 55.49 0.56 -26.80 16 19 Si 0.92 22.41 29.55 -169.99 -5.02 17.39 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.12 2.63 7.02 -3.07 -0.02 2.61 16 24 C -0.12 -1.19 9.36 -39.59 -0.37 -1.56 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 28 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 31 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.11 3.08 5.87 -51.93 -0.31 2.77 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 41 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -31.33 344.12 -10.03 -41.36 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.01 Total: -1.91 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.81 Total: -11.45 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -0.02 Total: -43.55 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.35 Total: -7.02 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.33 -10.03 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224868871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.714 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds