Wall clock time and date at job start Mon Mar 30 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38215 * 119.99743 * 359.94741 * 5 4 3 7 7 C 1.50706 * 119.99804 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46692 * 90.00474 * 7 6 5 9 9 O 1.42905 * 109.46956 * 179.97438 * 8 7 6 10 10 C 1.42901 * 113.99865 * 180.02562 * 9 8 7 11 11 H 1.09005 * 110.64299 * 31.68626 * 10 9 8 12 12 C 1.55159 * 110.71934 * 155.02568 * 10 9 8 13 13 C 1.54911 * 101.58262 * 153.86501 * 12 10 9 14 14 N 1.47429 * 104.82845 * 322.98718 * 13 12 10 15 15 C 1.36942 * 125.64682 * 204.09049 * 14 13 12 16 16 H 1.07994 * 119.99585 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00034 * 0.04688 * 15 14 13 18 18 N 1.31618 * 119.99862 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47162 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47457 * 119.99983 * 19 17 15 22 22 H 1.48498 * 109.46958 * 239.99947 * 19 17 15 23 23 C 1.47021 * 108.70211 * 24.13079 * 14 13 12 24 24 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 25 25 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 26 26 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 27 27 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 28 28 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 30 30 H 1.08005 * 120.00210 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47054 * 210.00380 * 7 6 5 32 32 H 1.08992 * 109.47376 * 330.00578 * 7 6 5 33 33 H 1.08995 * 109.47453 * 300.00033 * 8 7 6 34 34 H 1.09005 * 109.47419 * 60.00068 * 8 7 6 35 35 H 1.09004 * 111.00169 * 271.94037 * 12 10 9 36 36 H 1.08995 * 111.00506 * 35.78679 * 12 10 9 37 37 H 1.09000 * 110.36528 * 204.15568 * 13 12 10 38 38 H 1.08996 * 110.45899 * 81.87251 * 13 12 10 39 39 H 0.96998 * 120.00147 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.88306 * 239.51360 * 23 14 13 41 41 H 1.09008 * 110.00717 * 118.42896 * 23 14 13 42 42 H 1.07999 * 119.99936 * 0.04181 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0008 7 6 4.3343 -2.5019 0.0001 8 6 4.5847 -2.9469 1.4423 9 8 5.2988 -4.1847 1.4417 10 6 5.5848 -4.6914 2.7469 11 1 4.8001 -4.4094 3.4490 12 6 5.7663 -6.2319 2.7101 13 6 6.6880 -6.4658 3.9330 14 7 7.6049 -5.3114 3.9406 15 6 8.8501 -5.2850 4.5099 16 1 9.4468 -4.3862 4.4618 17 6 9.3455 -6.4137 5.1484 18 7 8.6181 -7.5090 5.2070 19 14 11.0442 -6.3779 5.9243 20 1 11.6529 -5.0386 5.7215 21 1 10.9302 -6.6552 7.3787 22 1 11.9005 -7.4115 5.2889 23 6 6.9607 -4.1930 3.2367 24 6 2.1981 -1.1969 -0.0045 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3634 0.8899 0.5139 28 1 1.6582 2.1327 0.0004 29 1 4.1203 2.1328 0.0101 30 1 5.3517 0.0002 0.0099 31 1 3.7468 -3.2604 -0.5174 32 1 5.2882 -2.3703 -0.5104 33 1 5.1721 -2.1885 1.9598 34 1 3.6307 -3.0785 1.9529 35 1 4.8109 -6.7410 2.8379 36 1 6.2541 -6.5459 1.7874 37 1 7.2474 -7.3938 3.8144 38 1 6.1025 -6.4913 4.8520 39 1 8.9643 -8.2979 5.6528 40 1 7.5702 -3.8906 2.3851 41 1 6.8295 -3.3506 3.9160 42 1 1.6581 -2.1322 -0.0088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224868871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:36 Heat of formation + Delta-G solvation = -24.864914 kcal Electronic energy + Delta-G solvation = -20399.155638 eV Core-core repulsion = 17343.603646 eV Total energy + Delta-G solvation = -3055.551992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.48188 -39.82868 -37.67013 -34.96199 -34.05535 -33.01115 -31.18074 -29.78144 -28.66040 -27.70106 -26.37489 -24.47321 -22.87394 -22.09595 -21.86732 -21.14915 -18.99536 -18.02687 -17.32830 -16.81302 -16.77527 -16.26611 -15.82059 -15.66685 -15.41503 -14.97306 -14.52570 -14.32009 -14.04983 -13.83097 -13.65814 -13.55968 -13.32317 -13.02505 -12.94559 -12.83058 -12.63204 -12.44326 -12.19650 -11.99850 -11.98385 -11.83027 -11.79980 -11.73822 -11.33505 -10.78577 -10.50083 -9.70479 -9.49024 -8.93764 -7.80433 -5.25963 0.40789 0.48398 1.46066 1.47611 1.58101 2.44687 2.58524 2.91043 3.30218 3.68335 3.80255 3.87734 3.92156 4.02136 4.08740 4.15372 4.19121 4.28142 4.33801 4.45437 4.52462 4.59044 4.63054 4.71682 4.79845 4.84938 4.88466 4.91551 4.97926 5.02407 5.05105 5.09703 5.23061 5.32999 5.42840 5.57776 5.58714 5.69342 5.72678 5.75670 6.13950 6.24993 6.32326 7.07317 7.73152 8.37006 9.22068 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035734 B = 0.002886 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.383716 B = 9700.436379 C =10171.238294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.095 4.095 3 C -0.132 4.132 4 C -0.122 4.122 5 C -0.136 4.136 6 C -0.087 4.087 7 C -0.071 4.071 8 C 0.065 3.935 9 O -0.387 6.387 10 C 0.093 3.907 11 H 0.081 0.919 12 C -0.124 4.124 13 C 0.154 3.846 14 N -0.625 5.625 15 C -0.243 4.243 16 H 0.079 0.921 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.985 3.015 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.113 3.887 24 C -0.127 4.127 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.078 0.922 38 H -0.003 1.003 39 H 0.249 0.751 40 H 0.025 0.975 41 H 0.024 0.976 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 15.516 -11.642 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.154 4.154 6 C -0.087 4.087 7 C -0.108 4.108 8 C -0.011 4.011 9 O -0.306 6.306 10 C 0.034 3.966 11 H 0.099 0.901 12 C -0.162 4.162 13 C 0.029 3.971 14 N -0.353 5.353 15 C -0.371 4.371 16 H 0.097 0.903 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.812 3.188 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.216 1.216 23 C -0.013 4.013 24 C -0.145 4.145 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.015 0.985 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.078 15.323 -11.713 25.110 hybrid contribution 1.078 -0.061 0.856 1.378 sum -15.001 15.261 -10.857 23.996 Atomic orbital electron populations 1.20835 0.89506 1.03553 1.03088 1.20261 0.97465 0.92952 0.98853 1.21355 0.94373 0.98342 1.00894 1.21413 0.94801 0.98383 0.99370 1.21286 1.00487 0.92411 1.01216 1.19774 0.94076 0.94429 1.00423 1.20400 1.00824 0.94269 0.95346 1.22585 0.95417 0.85385 0.97722 1.87882 1.76521 1.38806 1.27402 1.22964 0.94801 0.94590 0.84203 0.90128 1.22955 1.00436 0.93643 0.99179 1.21757 0.89782 0.93090 0.92455 1.44717 1.15458 1.10180 1.64916 1.19496 0.91615 0.98107 1.27929 0.90297 1.25687 1.02699 0.95671 1.01868 1.70032 1.37882 1.02933 1.49009 0.84920 0.78786 0.77690 0.77362 1.19218 1.21597 1.21563 1.21861 0.93920 0.90891 0.94620 1.21165 0.93377 0.98605 1.01392 0.90286 0.91123 0.90503 0.84170 0.84259 0.85665 0.89654 0.90438 0.93705 0.92434 0.88881 0.91686 0.90366 0.98538 0.94089 0.95685 0.95803 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.56 16 2 C -0.10 -1.60 5.88 -19.87 -0.12 -1.71 16 3 C -0.13 -2.11 9.70 22.27 0.22 -1.89 16 4 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 5 C -0.14 -2.73 9.70 22.27 0.22 -2.51 16 6 C -0.09 -1.82 5.13 -19.86 -0.10 -1.92 16 7 C -0.07 -1.59 5.71 29.85 0.17 -1.42 16 8 C 0.07 1.72 5.79 71.98 0.42 2.14 16 9 O -0.39 -13.02 10.07 -148.98 -1.50 -14.52 16 10 C 0.09 3.45 3.40 31.78 0.11 3.56 16 11 H 0.08 2.72 7.88 -2.38 -0.02 2.70 16 12 C -0.12 -4.93 6.81 31.99 0.22 -4.71 16 13 C 0.15 7.87 5.89 86.85 0.51 8.38 16 14 N -0.63 -34.04 3.39 -691.98 -2.35 -36.39 16 15 C -0.24 -14.15 10.27 84.03 0.86 -13.29 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 17 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 18 N -0.95 -57.42 10.09 21.65 0.22 -57.20 16 19 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 C 0.11 5.06 7.02 86.73 0.61 5.67 16 24 C -0.13 -2.42 9.36 22.27 0.21 -2.21 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 27 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 29 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 32 H 0.08 1.76 8.08 -2.39 -0.02 1.75 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.39 8.11 -2.38 -0.02 1.37 16 35 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.08 4.51 5.87 -2.39 -0.01 4.50 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.03 1.15 8.06 -2.39 -0.02 1.14 16 41 H 0.02 1.04 8.14 -2.38 -0.02 1.03 16 42 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -67.33 344.12 4.09 -63.24 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.97 Total: 12.18 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 4.72 Total: -15.76 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -2.13 Total: -93.58 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -1.50 Total: -14.52 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -67.33 4.09 -63.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224868871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.376 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds