Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.27920 * 3 2 1 5 5 C 1.38258 * 119.99784 * 359.47854 * 4 3 2 6 6 C 1.38211 * 120.00113 * 0.49766 * 5 4 3 7 7 C 1.50706 * 120.00262 * 179.76143 * 6 5 4 8 8 C 1.53000 * 109.47112 * 270.02169 * 7 6 5 9 9 O 1.42895 * 109.46593 * 179.97438 * 8 7 6 10 10 C 1.42907 * 113.99862 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.88041 * 330.70271 * 10 9 8 12 12 C 1.55150 * 111.00564 * 206.82094 * 10 9 8 13 13 C 1.54365 * 102.92156 * 206.44938 * 12 10 9 14 14 N 1.47018 * 107.28935 * 22.14121 * 13 12 10 15 15 C 1.36944 * 125.65310 * 181.12765 * 14 13 12 16 16 H 1.07998 * 119.99987 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99615 * 359.95538 * 15 14 13 18 18 N 1.31618 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00116 * 19 17 15 21 21 H 1.48501 * 109.47181 * 210.00223 * 19 17 15 22 22 H 1.48503 * 109.46981 * 329.99813 * 19 17 15 23 23 C 1.47426 * 108.70048 * 1.09034 * 14 13 12 24 24 C 1.38214 * 119.99514 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46667 * 90.00239 * 1 2 3 26 26 H 1.08988 * 109.47584 * 210.00451 * 1 2 3 27 27 H 1.09000 * 109.47013 * 330.00967 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.08004 * 120.00386 * 180.25925 * 5 4 3 31 31 H 1.09004 * 109.46834 * 30.02316 * 7 6 5 32 32 H 1.08997 * 109.47052 * 150.01796 * 7 6 5 33 33 H 1.08991 * 109.47114 * 299.99919 * 8 7 6 34 34 H 1.09000 * 109.46884 * 60.00330 * 8 7 6 35 35 H 1.08998 * 110.72319 * 324.78855 * 12 10 9 36 36 H 1.09005 * 110.71893 * 88.05854 * 12 10 9 37 37 H 1.09006 * 109.85075 * 262.73120 * 13 12 10 38 38 H 1.09003 * 109.90212 * 141.57363 * 13 12 10 39 39 H 0.96995 * 120.00684 * 179.97438 * 18 17 15 40 40 H 1.09006 * 110.36528 * 217.03517 * 23 14 13 41 41 H 1.08997 * 110.46002 * 94.76222 * 23 14 13 42 42 H 1.07997 * 120.00464 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0008 6 6 3.5806 -1.1971 -0.0003 7 6 4.3340 -2.5023 -0.0002 8 6 4.5890 -2.9440 -1.4427 9 8 5.3039 -4.1813 -1.4424 10 6 5.5952 -4.6845 -2.7479 11 1 4.8370 -4.3681 -3.4643 12 6 5.7332 -6.2298 -2.7302 13 6 6.6680 -6.5065 -3.9271 14 7 7.4147 -5.2685 -4.1937 15 6 8.3341 -5.0903 -5.1929 16 1 8.8306 -4.1379 -5.3063 17 6 8.6281 -6.1339 -6.0596 18 7 8.0230 -7.2946 -5.9214 19 14 9.8827 -5.8912 -7.4222 20 1 11.2329 -6.2550 -6.9223 21 1 9.5327 -6.7563 -8.5773 22 1 9.8798 -4.4691 -7.8501 23 6 7.0092 -4.2503 -3.2077 24 6 2.1980 -1.1970 -0.0005 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0104 30 1 5.3517 -0.0003 -0.0011 31 1 5.2865 -2.3719 0.5137 32 1 3.7449 -3.2618 0.5137 33 1 3.6367 -3.0743 -1.9565 34 1 5.1782 -2.1845 -1.9565 35 1 6.1896 -6.5656 -1.7991 36 1 4.7638 -6.7053 -2.8792 37 1 6.0780 -6.7793 -4.8022 38 1 7.3604 -7.3109 -3.6789 39 1 8.2281 -8.0237 -6.5273 40 1 6.9709 -3.2654 -3.6733 41 1 7.6974 -4.2430 -2.3625 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224868884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = -9.712013 kcal Electronic energy + Delta-G solvation = -20391.801764 eV Core-core repulsion = 17336.906851 eV Total energy + Delta-G solvation = -3054.894913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69388 -38.29790 -36.06937 -33.95324 -32.44140 -31.98161 -29.38413 -28.63278 -27.13630 -26.85627 -24.39982 -23.41437 -22.12668 -20.63013 -20.17227 -19.95825 -16.98878 -16.68067 -16.45199 -15.87995 -15.00797 -14.85413 -14.67467 -14.37406 -14.04351 -13.79258 -13.37811 -13.25203 -12.88306 -12.68249 -12.45370 -12.30788 -12.10763 -11.84110 -11.60317 -11.25878 -11.17993 -11.08136 -10.91166 -10.80038 -10.59938 -10.17771 -10.08195 -9.74850 -9.69535 -9.04179 -8.95305 -8.75796 -8.58186 -6.81746 -5.69520 -3.03482 1.15697 1.21118 3.41556 3.45946 3.48192 3.51330 3.96196 4.52266 4.58602 4.65249 4.80653 4.96420 5.06517 5.09716 5.27574 5.32543 5.34023 5.43833 5.46331 5.51253 5.53706 5.56523 5.59847 5.78894 5.80172 5.82741 5.91278 5.99527 6.04416 6.28797 6.32182 6.38887 6.49699 6.51198 6.57070 6.71707 6.75928 6.84756 7.57228 7.64026 7.66355 7.84528 8.27363 9.23362 9.83481 10.49484 11.42276 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030894 B = 0.002924 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.117907 B = 9572.436001 C = 9959.718067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.073 4.073 7 C -0.080 4.080 8 C 0.070 3.930 9 O -0.381 6.381 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.138 4.138 13 C 0.178 3.822 14 N -0.604 5.604 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.009 4.009 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.119 3.881 24 C -0.116 4.116 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.036 0.964 41 H 0.027 0.973 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.691 13.843 13.091 23.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.138 4.138 6 C -0.074 4.074 7 C -0.117 4.117 8 C -0.007 4.007 9 O -0.299 6.299 10 C 0.015 3.985 11 H 0.084 0.916 12 C -0.177 4.177 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.008 4.008 24 C -0.134 4.134 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.553 13.616 13.081 23.242 hybrid contribution 0.635 0.265 -1.010 1.223 sum -12.917 13.881 12.071 22.478 Atomic orbital electron populations 1.20793 0.91251 1.02683 1.02387 1.19917 0.96046 0.93170 0.99629 1.21016 0.94314 0.97414 1.01727 1.21132 0.94291 0.98004 0.99903 1.21114 1.00099 0.91947 1.00607 1.19784 0.93637 0.94780 0.99155 1.20495 1.00697 0.93604 0.96899 1.22373 0.95483 0.86948 0.95940 1.87845 1.75950 1.37388 1.28757 1.23411 0.96951 0.95321 0.82848 0.91646 1.22998 1.00502 0.93019 1.01151 1.21175 0.91984 0.89137 0.92324 1.44364 1.47294 1.08487 1.33083 1.19071 1.14137 0.97691 1.04686 0.90411 1.24817 1.00209 0.95912 0.99597 1.69956 1.44974 1.02575 1.39557 0.86096 0.80921 0.77212 0.81399 1.21568 1.21652 1.20695 1.21908 0.93008 0.93052 0.92808 1.20978 0.93555 0.97683 1.01154 0.91137 0.91520 0.91650 0.86301 0.86058 0.85864 0.90046 0.90215 0.93623 0.93340 0.91480 0.91898 0.93388 0.93567 0.93717 0.94573 0.95481 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.13 -1.15 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 6 C -0.07 -0.80 5.13 -104.62 -0.54 -1.34 16 7 C -0.08 -0.92 5.71 -27.88 -0.16 -1.08 16 8 C 0.07 0.96 5.78 37.16 0.21 1.18 16 9 O -0.38 -6.56 10.15 -35.23 -0.36 -6.92 16 10 C 0.07 1.40 3.52 -24.59 -0.09 1.32 16 11 H 0.07 1.22 7.86 -51.93 -0.41 0.82 16 12 C -0.14 -2.78 6.69 -24.88 -0.17 -2.94 16 13 C 0.18 4.49 5.37 -3.04 -0.02 4.48 16 14 N -0.60 -16.12 3.39 -170.05 -0.58 -16.70 16 15 C -0.23 -6.53 10.28 -15.06 -0.15 -6.68 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -27.57 10.31 55.49 0.57 -26.99 16 19 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.12 2.64 6.97 -2.53 -0.02 2.62 16 24 C -0.12 -1.19 9.36 -39.58 -0.37 -1.56 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.42 8.08 -51.94 -0.42 0.00 16 27 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 31 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 32 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.05 0.61 8.11 -51.93 -0.42 0.18 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 38 H 0.05 1.27 7.51 -51.93 -0.39 0.88 16 39 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -31.44 344.80 -10.06 -41.49 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -7.06 Total: -2.58 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.81 Total: -10.88 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.00 Total: -43.69 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.36 Total: -6.92 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.44 -10.06 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224868884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.780 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds