Wall clock time and date at job start Mon Mar 30 2020 02:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 120.00325 * 2 1 4 4 C 1.38211 * 120.00062 * 180.27920 * 3 2 1 5 5 C 1.38258 * 119.99784 * 359.47854 * 4 3 2 6 6 C 1.38211 * 120.00113 * 0.49766 * 5 4 3 7 7 C 1.50706 * 120.00262 * 179.76143 * 6 5 4 8 8 C 1.53000 * 109.47112 * 270.02169 * 7 6 5 9 9 O 1.42895 * 109.46593 * 179.97438 * 8 7 6 10 10 C 1.42907 * 113.99862 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.88041 * 330.70271 * 10 9 8 12 12 C 1.55150 * 111.00564 * 206.82094 * 10 9 8 13 13 C 1.54365 * 102.92156 * 206.44938 * 12 10 9 14 14 N 1.47018 * 107.28935 * 22.14121 * 13 12 10 15 15 C 1.36944 * 125.65310 * 181.12765 * 14 13 12 16 16 H 1.07998 * 119.99987 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99615 * 359.95538 * 15 14 13 18 18 N 1.31618 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46867 * 90.00116 * 19 17 15 21 21 H 1.48501 * 109.47181 * 210.00223 * 19 17 15 22 22 H 1.48503 * 109.46981 * 329.99813 * 19 17 15 23 23 C 1.47426 * 108.70048 * 1.09034 * 14 13 12 24 24 C 1.38214 * 119.99514 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.46667 * 90.00239 * 1 2 3 26 26 H 1.08988 * 109.47584 * 210.00451 * 1 2 3 27 27 H 1.09000 * 109.47013 * 330.00967 * 1 2 3 28 28 H 1.08002 * 119.99676 * 359.97438 * 3 2 1 29 29 H 1.07998 * 120.00348 * 179.72205 * 4 3 2 30 30 H 1.08004 * 120.00386 * 180.25925 * 5 4 3 31 31 H 1.09004 * 109.46834 * 30.02316 * 7 6 5 32 32 H 1.08997 * 109.47052 * 150.01796 * 7 6 5 33 33 H 1.08991 * 109.47114 * 299.99919 * 8 7 6 34 34 H 1.09000 * 109.46884 * 60.00330 * 8 7 6 35 35 H 1.08998 * 110.72319 * 324.78855 * 12 10 9 36 36 H 1.09005 * 110.71893 * 88.05854 * 12 10 9 37 37 H 1.09006 * 109.85075 * 262.73120 * 13 12 10 38 38 H 1.09003 * 109.90212 * 141.57363 * 13 12 10 39 39 H 0.96995 * 120.00684 * 179.97438 * 18 17 15 40 40 H 1.09006 * 110.36528 * 217.03517 * 23 14 13 41 41 H 1.08997 * 110.46002 * 94.76222 * 23 14 13 42 42 H 1.07997 * 120.00464 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0008 6 6 3.5806 -1.1971 -0.0003 7 6 4.3340 -2.5023 -0.0002 8 6 4.5890 -2.9440 -1.4427 9 8 5.3039 -4.1813 -1.4424 10 6 5.5952 -4.6845 -2.7479 11 1 4.8370 -4.3681 -3.4643 12 6 5.7332 -6.2298 -2.7302 13 6 6.6680 -6.5065 -3.9271 14 7 7.4147 -5.2685 -4.1937 15 6 8.3341 -5.0903 -5.1929 16 1 8.8306 -4.1379 -5.3063 17 6 8.6281 -6.1339 -6.0596 18 7 8.0230 -7.2946 -5.9214 19 14 9.8827 -5.8912 -7.4222 20 1 11.2329 -6.2550 -6.9223 21 1 9.5327 -6.7563 -8.5773 22 1 9.8798 -4.4691 -7.8501 23 6 7.0092 -4.2503 -3.2077 24 6 2.1980 -1.1970 -0.0005 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0104 30 1 5.3517 -0.0003 -0.0011 31 1 5.2865 -2.3719 0.5137 32 1 3.7449 -3.2618 0.5137 33 1 3.6367 -3.0743 -1.9565 34 1 5.1782 -2.1845 -1.9565 35 1 6.1896 -6.5656 -1.7991 36 1 4.7638 -6.7053 -2.8792 37 1 6.0780 -6.7793 -4.8022 38 1 7.3604 -7.3109 -3.6789 39 1 8.2281 -8.0237 -6.5273 40 1 6.9709 -3.2654 -3.6733 41 1 7.6974 -4.2430 -2.3625 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224868884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:39 Heat of formation + Delta-G solvation = -26.086146 kcal Electronic energy + Delta-G solvation = -20392.511800 eV Core-core repulsion = 17336.906851 eV Total energy + Delta-G solvation = -3055.604949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47127 -39.80867 -37.68541 -34.95295 -34.05850 -33.00667 -31.17390 -29.79659 -28.65504 -27.69826 -26.36335 -24.45665 -22.86492 -22.07843 -21.92543 -21.14765 -18.98009 -18.00526 -17.32036 -16.81240 -16.72472 -16.22408 -15.78119 -15.71102 -15.44547 -14.89930 -14.56176 -14.16390 -14.09384 -13.93784 -13.76203 -13.67179 -13.28798 -13.00647 -12.93723 -12.84275 -12.62443 -12.33546 -12.16072 -12.03862 -12.01081 -11.83278 -11.80309 -11.70938 -11.44174 -10.73813 -10.46980 -9.69958 -9.48599 -8.95028 -7.87457 -5.24793 0.41315 0.48898 1.45420 1.48082 1.56765 2.42943 2.58510 2.90976 3.31145 3.70366 3.80446 3.87671 3.93994 4.01695 4.08647 4.14797 4.19939 4.28605 4.34319 4.46241 4.52611 4.59177 4.61632 4.70234 4.79208 4.84641 4.90572 4.93334 4.94257 5.02713 5.05049 5.11598 5.23827 5.33281 5.41286 5.58299 5.60997 5.69761 5.70596 5.73168 6.13673 6.14501 6.31232 7.06531 7.72256 8.37018 9.23111 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030894 B = 0.002924 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.117907 B = 9572.436001 C = 9959.718067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.122 4.122 5 C -0.135 4.135 6 C -0.087 4.087 7 C -0.070 4.070 8 C 0.066 3.934 9 O -0.385 6.385 10 C 0.091 3.909 11 H 0.075 0.925 12 C -0.125 4.125 13 C 0.186 3.814 14 N -0.626 5.626 15 C -0.247 4.247 16 H 0.083 0.917 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.983 3.017 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.268 1.268 23 C 0.115 3.885 24 C -0.128 4.128 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.019 0.981 38 H 0.011 0.989 39 H 0.249 0.751 40 H 0.042 0.958 41 H 0.024 0.976 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.727 15.494 13.594 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.153 4.153 6 C -0.087 4.087 7 C -0.108 4.108 8 C -0.011 4.011 9 O -0.303 6.303 10 C 0.032 3.968 11 H 0.093 0.907 12 C -0.163 4.163 13 C 0.061 3.939 14 N -0.354 5.354 15 C -0.376 4.376 16 H 0.100 0.900 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.811 3.189 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.192 1.192 23 C -0.011 4.011 24 C -0.146 4.146 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.038 0.962 38 H 0.030 0.970 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.601 15.300 13.614 25.152 hybrid contribution 0.931 -0.168 -1.107 1.456 sum -13.670 15.132 12.507 23.922 Atomic orbital electron populations 1.20835 0.89566 1.03646 1.02957 1.20259 0.97441 0.92987 0.98909 1.21353 0.94420 0.98311 1.00916 1.21419 0.94772 0.98438 0.99368 1.21293 1.00544 0.92345 1.01129 1.19784 0.94038 0.94515 1.00398 1.20399 1.00920 0.94204 0.95242 1.22581 0.95340 0.85377 0.97760 1.87836 1.76407 1.38903 1.27189 1.23069 0.95250 0.94432 0.84023 0.90730 1.22833 1.00465 0.94155 0.98895 1.20934 0.91633 0.88057 0.93280 1.44672 1.47250 1.10004 1.33492 1.19475 1.14725 0.98017 1.05390 0.89951 1.25718 1.02365 0.95682 1.02121 1.70174 1.46319 1.03213 1.40327 0.85014 0.78178 0.77642 0.78088 1.21215 1.21784 1.19239 1.22049 0.94822 0.92433 0.91773 1.21173 0.93462 0.98565 1.01411 0.90654 0.90968 0.90360 0.84219 0.84237 0.85496 0.90155 0.89663 0.92748 0.93606 0.90857 0.89259 0.96231 0.97037 0.94186 0.93923 0.95867 0.85230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 2 C -0.10 -1.62 5.88 -19.86 -0.12 -1.74 16 3 C -0.13 -2.12 9.70 22.27 0.22 -1.91 16 4 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 5 C -0.14 -2.66 9.70 22.27 0.22 -2.44 16 6 C -0.09 -1.80 5.13 -19.86 -0.10 -1.91 16 7 C -0.07 -1.52 5.71 29.85 0.17 -1.35 16 8 C 0.07 1.72 5.78 71.98 0.42 2.13 16 9 O -0.38 -12.59 10.15 -148.98 -1.51 -14.10 16 10 C 0.09 3.38 3.52 31.98 0.11 3.49 16 11 H 0.07 2.65 7.86 -2.39 -0.02 2.64 16 12 C -0.13 -4.92 6.69 31.79 0.21 -4.70 16 13 C 0.19 9.57 5.37 86.74 0.47 10.03 16 14 N -0.63 -33.84 3.39 -691.90 -2.35 -36.19 16 15 C -0.25 -14.33 10.28 84.03 0.86 -13.47 16 16 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 17 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 18 N -0.95 -58.26 10.31 21.65 0.22 -58.04 16 19 Si 0.98 46.39 29.55 68.60 2.03 48.41 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.12 5.07 6.97 86.85 0.61 5.67 16 24 C -0.13 -2.44 9.36 22.27 0.21 -2.23 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 27 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 29 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 30 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.08 1.73 8.09 -2.38 -0.02 1.72 16 32 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 33 H 0.05 1.34 8.11 -2.39 -0.02 1.32 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 37 H 0.02 1.10 7.38 -2.38 -0.02 1.08 16 38 H 0.01 0.65 7.51 -2.39 -0.02 0.64 16 39 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -67.67 344.80 4.03 -63.64 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.97 Total: 10.51 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.67 Total: -14.25 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -2.13 Total: -94.22 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.51 Total: -14.10 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -67.67 4.03 -63.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224868884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.559 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds