Wall clock time and date at job start Mon Mar 30 2020 02:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 119.99910 * 2 1 4 4 C 1.38220 * 119.99857 * 180.23282 * 3 2 1 5 5 C 1.38263 * 119.99790 * 359.81136 * 4 3 2 6 6 C 1.38206 * 119.99954 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.00008 * 179.78904 * 2 1 3 8 8 C 1.50699 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47731 * 84.72344 * 8 7 2 10 10 O 1.42895 * 109.47118 * 179.97438 * 9 8 7 11 11 C 1.42904 * 114.00030 * 180.02562 * 10 9 8 12 12 C 1.53513 * 114.16833 * 210.00050 * 11 10 9 13 13 N 1.47484 * 87.93060 * 220.32420 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 H 1.08000 * 119.99302 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72677 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46683 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99986 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 24 24 H 1.09006 * 109.47252 * 270.20743 * 1 2 3 25 25 H 1.08998 * 109.47287 * 30.20889 * 1 2 3 26 26 H 1.08998 * 109.47063 * 150.21001 * 1 2 3 27 27 H 1.07994 * 119.99953 * 0.06383 * 3 2 1 28 28 H 1.07999 * 120.00048 * 179.83415 * 4 3 2 29 29 H 1.08000 * 119.99501 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.99910 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47124 * 324.71538 * 8 7 2 32 32 H 1.09008 * 109.46690 * 204.72993 * 8 7 2 33 33 H 1.09001 * 109.47037 * 60.00045 * 9 8 7 34 34 H 1.08997 * 109.46907 * 299.99831 * 9 8 7 35 35 H 1.09003 * 113.37734 * 343.07418 * 11 10 9 36 36 H 1.09005 * 113.47855 * 105.56295 * 12 11 10 37 37 H 1.08997 * 113.47719 * 335.09320 * 12 11 10 38 38 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 39 39 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 40 40 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 41 41 H 1.09000 * 113.48071 * 87.76093 * 23 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0013 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0086 9 6 1.0752 -2.8825 -1.4265 10 8 0.3612 -4.1203 -1.4224 11 6 -0.0325 -4.5685 -2.7210 12 6 -1.3243 -5.3977 -2.7348 13 7 -0.6842 -6.2798 -3.7285 14 6 -0.9825 -7.6908 -3.4495 15 6 -0.5261 -8.5394 -4.6082 16 1 -0.0605 -8.0767 -5.4659 17 6 -0.6972 -9.9070 -4.5707 18 7 -1.2583 -10.4709 -3.5235 19 14 -0.1307 -10.9589 -6.0066 20 1 0.4646 -10.0892 -7.0528 21 1 0.8855 -11.9338 -5.5356 22 1 -1.2925 -11.6898 -6.5734 23 6 0.6167 -5.8907 -3.1531 24 1 -0.3634 0.0037 1.0277 25 1 -0.3634 0.8881 -0.5171 26 1 -0.3633 -0.8918 -0.5106 27 1 1.6583 2.1326 0.0010 28 1 4.1204 2.1326 -0.0076 29 1 5.3517 0.0000 -0.0092 30 1 4.1206 -2.1323 -0.0025 31 1 0.5362 -2.3952 0.6015 32 1 2.0712 -3.2820 0.4415 33 1 1.9836 -2.9894 -2.0193 34 1 0.4486 -2.1026 -1.8592 35 1 0.0033 -3.7853 -3.4782 36 1 -2.1846 -4.8549 -3.1264 37 1 -1.5332 -5.8921 -1.7861 38 1 -2.0564 -7.8144 -3.3095 39 1 -0.4602 -8.0005 -2.5443 40 1 -1.3783 -11.4331 -3.4969 41 1 0.9259 -6.5167 -2.3160 42 1 1.4016 -5.7657 -3.8991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224868982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:59 Heat of formation + Delta-G solvation = 4.793635 kcal Electronic energy + Delta-G solvation = -20220.280222 eV Core-core repulsion = 17166.014321 eV Total energy + Delta-G solvation = -3054.265901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.93023 -39.43584 -36.77817 -33.84814 -32.82928 -32.48656 -29.50173 -28.51935 -27.06355 -25.37467 -24.98318 -23.52541 -22.12385 -21.54194 -20.71701 -19.34311 -17.04986 -16.48237 -16.29140 -16.13867 -15.36012 -15.10849 -14.99495 -14.36644 -14.30959 -13.69471 -13.57741 -13.42153 -13.17792 -12.74614 -12.52326 -12.24129 -12.23471 -12.01580 -11.96852 -11.47168 -11.25025 -11.15185 -11.05574 -10.94689 -10.71271 -10.48249 -10.17522 -9.74245 -9.19806 -9.10071 -9.03613 -8.79966 -8.42743 -7.90442 -6.02263 -4.03479 1.08968 1.14914 3.31920 3.38846 3.43621 3.45108 3.81070 4.44343 4.55628 4.62213 4.74323 4.82374 4.86777 4.97335 5.02943 5.08717 5.13812 5.28788 5.32835 5.33499 5.37892 5.41007 5.46191 5.62569 5.70004 5.72882 5.93415 5.94285 6.02878 6.10599 6.20087 6.25687 6.27678 6.34145 6.42582 6.45221 6.61704 6.78377 7.21357 7.46453 7.66382 7.87240 8.11422 8.46337 9.04139 9.60475 11.08942 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.002657 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.957053 B =10537.333307 C =10895.788310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.080 4.080 8 C -0.082 4.082 9 C 0.068 3.932 10 O -0.376 6.376 11 C 0.053 3.947 12 C -0.003 4.003 13 N -0.464 5.464 14 C 0.161 3.839 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.053 3.947 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.005 4.005 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.030 0.970 39 H 0.005 0.995 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 23.294 8.827 25.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.080 4.080 8 C -0.119 4.119 9 C -0.009 4.009 10 O -0.294 6.294 11 C -0.005 4.005 12 C -0.132 4.132 13 N -0.189 5.189 14 C 0.035 3.965 15 C -0.542 4.542 16 H 0.082 0.918 17 C -0.148 4.148 18 N -0.540 5.540 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.134 4.134 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.187 23.052 8.342 25.547 hybrid contribution 0.546 -0.792 -0.053 0.964 sum 7.734 22.260 8.289 24.981 Atomic orbital electron populations 1.20921 0.91136 1.03256 1.02598 1.19838 0.96163 0.92584 0.99402 1.21027 0.94287 0.97407 1.01215 1.21132 0.94326 0.98036 1.00442 1.21130 0.99868 0.92512 1.00860 1.21116 0.93580 0.98368 0.99760 1.19644 0.93632 0.94191 1.00570 1.20498 1.00688 0.93864 0.96845 1.22436 0.95701 0.86424 0.96352 1.87933 1.74417 1.38201 1.28829 1.24000 0.96988 0.95286 0.84275 1.24051 0.96514 0.95767 0.96900 1.68949 1.02644 1.08972 1.38309 1.20268 0.97108 0.82613 0.96544 1.21139 1.38806 0.90981 1.03313 0.91812 1.25016 0.95493 0.98029 0.96276 1.69972 1.44185 1.10762 1.29043 0.86411 0.78326 0.80141 0.82385 1.19637 1.21073 1.20984 1.24242 0.95838 0.94879 0.98490 0.90998 0.91529 0.90744 0.86150 0.86229 0.86120 0.85841 0.89935 0.90072 0.93271 0.93304 0.88918 0.90395 0.91272 0.95243 0.97669 0.92959 0.91066 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.22 36.01 0.33 -0.64 16 2 C -0.08 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 5 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 6 C -0.11 -1.05 9.68 -39.59 -0.38 -1.43 16 7 C -0.08 -0.81 5.13 -104.62 -0.54 -1.34 16 8 C -0.08 -0.86 5.02 -27.89 -0.14 -1.00 16 9 C 0.07 0.81 5.57 37.16 0.21 1.02 16 10 O -0.38 -5.79 10.39 -35.23 -0.37 -6.15 16 11 C 0.05 0.86 4.65 -26.21 -0.12 0.74 16 12 C 0.00 -0.06 7.52 -7.55 -0.06 -0.11 16 13 N -0.46 -10.49 6.32 -246.14 -1.55 -12.04 16 14 C 0.16 4.33 4.57 -4.98 -0.02 4.31 16 15 C -0.50 -14.69 9.39 -34.44 -0.32 -15.01 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 19 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.00 -0.10 7.55 -7.56 -0.06 -0.16 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.63 5.40 -51.93 -0.28 0.35 16 27 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.08 0.84 7.01 -51.93 -0.36 0.48 16 32 H 0.08 0.86 8.05 -51.92 -0.42 0.44 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.54 6.88 -51.93 -0.36 0.18 16 35 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 38 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 1.48 7.42 -51.93 -0.39 1.10 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -31.65 345.24 -10.77 -42.42 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.77 Total: -2.13 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -3.00 Total: -17.83 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.82 Total: -38.57 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.37 Total: -6.15 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.65 -10.77 -42.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224868982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.214 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds