Wall clock time and date at job start Mon Mar 30 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 119.99910 * 2 1 4 4 C 1.38220 * 119.99857 * 180.23282 * 3 2 1 5 5 C 1.38263 * 119.99790 * 359.81136 * 4 3 2 6 6 C 1.38206 * 119.99954 * 359.97438 * 5 4 3 7 7 C 1.38220 * 120.00008 * 179.78904 * 2 1 3 8 8 C 1.50699 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.52996 * 109.47731 * 84.72344 * 8 7 2 10 10 O 1.42895 * 109.47118 * 179.97438 * 9 8 7 11 11 C 1.42904 * 114.00030 * 180.02562 * 10 9 8 12 12 C 1.53513 * 114.16833 * 210.00050 * 11 10 9 13 13 N 1.47484 * 87.93060 * 220.32420 * 12 11 10 14 14 C 1.46895 * 110.99756 * 138.70311 * 13 12 11 15 15 C 1.50706 * 109.47182 * 170.00145 * 14 13 12 16 16 H 1.08000 * 119.99302 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72677 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46683 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99743 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99986 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 13 12 11 24 24 H 1.09006 * 109.47252 * 270.20743 * 1 2 3 25 25 H 1.08998 * 109.47287 * 30.20889 * 1 2 3 26 26 H 1.08998 * 109.47063 * 150.21001 * 1 2 3 27 27 H 1.07994 * 119.99953 * 0.06383 * 3 2 1 28 28 H 1.07999 * 120.00048 * 179.83415 * 4 3 2 29 29 H 1.08000 * 119.99501 * 180.02562 * 5 4 3 30 30 H 1.07998 * 119.99910 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47124 * 324.71538 * 8 7 2 32 32 H 1.09008 * 109.46690 * 204.72993 * 8 7 2 33 33 H 1.09001 * 109.47037 * 60.00045 * 9 8 7 34 34 H 1.08997 * 109.46907 * 299.99831 * 9 8 7 35 35 H 1.09003 * 113.37734 * 343.07418 * 11 10 9 36 36 H 1.09005 * 113.47855 * 105.56295 * 12 11 10 37 37 H 1.08997 * 113.47719 * 335.09320 * 12 11 10 38 38 H 1.09001 * 109.47613 * 50.00491 * 14 13 12 39 39 H 1.08998 * 109.47678 * 290.00386 * 14 13 12 40 40 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 41 41 H 1.09000 * 113.48071 * 87.76093 * 23 13 12 42 42 H 1.09004 * 113.47566 * 218.21901 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0013 7 6 2.1981 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0086 9 6 1.0752 -2.8825 -1.4265 10 8 0.3612 -4.1203 -1.4224 11 6 -0.0325 -4.5685 -2.7210 12 6 -1.3243 -5.3977 -2.7348 13 7 -0.6842 -6.2798 -3.7285 14 6 -0.9825 -7.6908 -3.4495 15 6 -0.5261 -8.5394 -4.6082 16 1 -0.0605 -8.0767 -5.4659 17 6 -0.6972 -9.9070 -4.5707 18 7 -1.2583 -10.4709 -3.5235 19 14 -0.1307 -10.9589 -6.0066 20 1 0.4646 -10.0892 -7.0528 21 1 0.8855 -11.9338 -5.5356 22 1 -1.2925 -11.6898 -6.5734 23 6 0.6167 -5.8907 -3.1531 24 1 -0.3634 0.0037 1.0277 25 1 -0.3634 0.8881 -0.5171 26 1 -0.3633 -0.8918 -0.5106 27 1 1.6583 2.1326 0.0010 28 1 4.1204 2.1326 -0.0076 29 1 5.3517 0.0000 -0.0092 30 1 4.1206 -2.1323 -0.0025 31 1 0.5362 -2.3952 0.6015 32 1 2.0712 -3.2820 0.4415 33 1 1.9836 -2.9894 -2.0193 34 1 0.4486 -2.1026 -1.8592 35 1 0.0033 -3.7853 -3.4782 36 1 -2.1846 -4.8549 -3.1264 37 1 -1.5332 -5.8921 -1.7861 38 1 -2.0564 -7.8144 -3.3095 39 1 -0.4602 -8.0005 -2.5443 40 1 -1.3783 -11.4331 -3.4969 41 1 0.9259 -6.5167 -2.3160 42 1 1.4016 -5.7657 -3.8991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224868982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:58 Heat of formation + Delta-G solvation = -14.939780 kcal Electronic energy + Delta-G solvation = -20221.135927 eV Core-core repulsion = 17166.014321 eV Total energy + Delta-G solvation = -3055.121606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10676 -40.47869 -38.03910 -35.10436 -34.51977 -33.19921 -31.17842 -29.60266 -27.73807 -27.08879 -26.73362 -24.44996 -23.41720 -22.80632 -21.49317 -20.82150 -18.69004 -18.04665 -17.19757 -17.07506 -16.93250 -16.30788 -16.07864 -15.77916 -15.51206 -15.10820 -14.63600 -14.27453 -14.22687 -13.97637 -13.70588 -13.66510 -13.38461 -13.24842 -12.99508 -12.88897 -12.80204 -12.43250 -12.32958 -12.13648 -11.97002 -11.82103 -11.68918 -11.57440 -11.21307 -10.64893 -10.39965 -9.77364 -9.69337 -9.46379 -8.25123 -6.36159 0.41965 0.49568 1.39074 1.39884 1.54265 2.37180 2.52720 2.90236 3.06955 3.38219 3.46420 3.88763 3.90483 3.94416 4.09472 4.12978 4.25331 4.28583 4.38847 4.44538 4.50492 4.52821 4.60398 4.65123 4.69951 4.81655 4.82004 4.84467 4.90029 4.97060 4.98723 5.00265 5.07467 5.23205 5.36945 5.53808 5.61147 5.63917 5.72784 5.76851 6.03457 6.15016 6.26850 6.38360 6.78091 7.33558 8.86662 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.002657 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.957053 B =10537.333307 C =10895.788310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.134 4.134 6 C -0.125 4.125 7 C -0.096 4.096 8 C -0.075 4.075 9 C 0.065 3.935 10 O -0.388 6.388 11 C 0.084 3.916 12 C -0.007 4.007 13 N -0.480 5.480 14 C 0.176 3.824 15 C -0.527 4.527 16 H 0.060 0.940 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.975 3.025 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.275 1.275 23 C -0.012 4.012 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.003 0.997 39 H -0.022 1.022 40 H 0.266 0.734 41 H 0.052 0.948 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 25.056 8.010 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.143 4.143 7 C -0.096 4.096 8 C -0.112 4.112 9 C -0.011 4.011 10 O -0.307 6.307 11 C 0.025 3.975 12 C -0.136 4.136 13 N -0.203 5.203 14 C 0.049 3.951 15 C -0.565 4.565 16 H 0.079 0.921 17 C -0.199 4.199 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.201 1.201 23 C -0.142 4.142 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.145 0.855 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.021 0.979 39 H -0.004 1.004 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.023 24.840 7.535 27.169 hybrid contribution 0.316 -1.244 0.282 1.314 sum 8.339 23.596 7.818 26.219 Atomic orbital electron populations 1.20932 0.90342 1.03484 1.03038 1.20065 0.96941 0.92704 0.99398 1.21324 0.94720 0.97891 1.00746 1.21472 0.94490 0.98867 0.99415 1.21407 1.00931 0.92349 1.00477 1.21299 0.93657 0.99144 1.00160 1.19650 0.93922 0.94055 1.01940 1.20410 1.00719 0.94222 0.95858 1.22635 0.95670 0.85206 0.97574 1.87921 1.74742 1.39963 1.28057 1.23678 0.93952 0.94447 0.85383 1.24117 0.98521 0.95480 0.95517 1.68843 1.04994 1.06562 1.39947 1.19923 0.94843 0.85437 0.94884 1.21445 1.39345 0.91933 1.03794 0.92137 1.25994 0.95231 0.99398 0.99275 1.70093 1.44914 1.11403 1.31117 0.85254 0.78122 0.78115 0.78646 1.18762 1.20154 1.20064 1.24293 0.95066 0.96697 0.98137 0.90468 0.90269 0.91487 0.84291 0.84022 0.84394 0.85490 0.89872 0.90662 0.92995 0.91867 0.86089 0.88239 0.92557 0.97914 1.00444 0.92514 0.92991 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.22 71.24 0.66 -1.06 16 2 C -0.09 -1.57 5.88 -19.86 -0.12 -1.68 16 3 C -0.13 -1.93 9.70 22.27 0.22 -1.71 16 4 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 5 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 6 C -0.12 -2.25 9.68 22.27 0.22 -2.03 16 7 C -0.10 -1.82 5.13 -19.87 -0.10 -1.92 16 8 C -0.07 -1.52 5.02 29.85 0.15 -1.37 16 9 C 0.07 1.47 5.57 71.98 0.40 1.87 16 10 O -0.39 -11.58 10.39 -148.98 -1.55 -13.13 16 11 C 0.08 2.64 4.65 30.94 0.14 2.79 16 12 C -0.01 -0.27 7.52 83.57 0.63 0.36 16 13 N -0.48 -21.93 6.32 -933.04 -5.89 -27.82 16 14 C 0.18 9.87 4.57 85.56 0.39 10.26 16 15 C -0.53 -31.32 9.39 25.60 0.24 -31.08 16 16 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 18 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 19 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 C -0.01 -0.49 7.55 83.57 0.63 0.14 16 24 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 26 H 0.07 1.04 5.40 -2.39 -0.01 1.02 16 27 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 28 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 29 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.13 2.07 8.06 -2.91 -0.02 2.04 16 31 H 0.08 1.65 7.01 -2.39 -0.02 1.63 16 32 H 0.07 1.58 8.05 -2.38 -0.02 1.56 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.26 6.88 -2.39 -0.02 1.25 16 35 H 0.12 3.19 7.88 -2.39 -0.02 3.17 16 36 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 37 H 0.06 2.24 7.91 -2.39 -0.02 2.22 16 38 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 39 H -0.02 -1.34 7.30 -2.39 -0.02 -1.35 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.05 2.24 7.42 -2.39 -0.02 2.23 16 42 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -68.56 345.24 0.21 -68.35 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.98 Total: 11.08 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.36 Total: -28.42 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -5.61 Total: -85.23 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.55 Total: -13.13 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -68.56 0.21 -68.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224868982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.406 kcal (2) G-P(sol) polarization free energy of solvation -68.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds