Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38252 * 119.99914 * 2 1 4 4 C 1.38212 * 120.00138 * 180.27658 * 3 2 1 5 5 C 1.38257 * 119.99902 * 359.75388 * 4 3 2 6 6 C 1.38210 * 119.99862 * 359.97386 * 5 4 3 7 7 C 1.38213 * 120.00163 * 179.75828 * 2 1 3 8 8 C 1.50701 * 120.00125 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.46853 * 84.73401 * 8 7 2 10 10 O 1.42899 * 109.46835 * 180.02562 * 9 8 7 11 11 C 1.42900 * 113.99779 * 180.02562 * 10 9 8 12 12 H 1.09002 * 110.88964 * 32.42357 * 11 10 9 13 13 C 1.55157 * 111.03819 * 156.33264 * 11 10 9 14 14 C 1.54334 * 103.02095 * 153.39191 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 H 1.08998 * 109.46537 * 270.24762 * 1 2 3 26 26 H 1.09000 * 109.47357 * 30.24850 * 1 2 3 27 27 H 1.09003 * 109.46954 * 150.25064 * 1 2 3 28 28 H 1.08006 * 120.00378 * 0.04712 * 3 2 1 29 29 H 1.08005 * 120.00342 * 179.77156 * 4 3 2 30 30 H 1.08002 * 120.00383 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.99912 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.46840 * 324.73438 * 8 7 2 33 33 H 1.08996 * 109.47480 * 204.73618 * 8 7 2 34 34 H 1.08996 * 109.46905 * 60.00285 * 9 8 7 35 35 H 1.08996 * 109.47064 * 299.99836 * 9 8 7 36 36 H 1.08998 * 110.71770 * 271.95360 * 13 11 10 37 37 H 1.09002 * 110.71853 * 35.04793 * 13 11 10 38 38 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 39 39 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 40 40 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 42 42 H 1.08999 * 110.36944 * 265.52330 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0007 7 6 2.1981 -1.1969 0.0050 8 6 1.4447 -2.5021 0.0111 9 6 1.0745 -2.8839 -1.4235 10 8 0.3596 -4.1211 -1.4176 11 6 -0.0348 -4.5706 -2.7155 12 1 0.6939 -4.2708 -3.4687 13 6 -0.2507 -6.1070 -2.7311 14 6 -1.2713 -6.3031 -3.8721 15 7 -1.9651 -5.0210 -4.0622 16 6 -2.9335 -4.7684 -4.9969 17 1 -3.3877 -3.7902 -5.0531 18 6 -3.3314 -5.7697 -5.8720 19 7 -2.7782 -6.9621 -5.8032 20 14 -4.6529 -5.4255 -7.1466 21 1 -4.8941 -6.6492 -7.9525 22 1 -5.9091 -5.0273 -6.4621 23 1 -4.2055 -4.3260 -8.0389 24 6 -1.4502 -4.0540 -3.0757 25 1 -0.3632 0.0044 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1327 -0.0095 30 1 5.3517 0.0000 -0.0105 31 1 4.1207 -2.1322 -0.0008 32 1 0.5366 -2.3945 0.6044 33 1 2.0715 -3.2815 0.4444 34 1 1.9826 -2.9914 -2.0166 35 1 0.4477 -2.1045 -1.8566 36 1 0.6824 -6.6253 -2.9518 37 1 -0.6644 -6.4479 -1.7820 38 1 -1.9897 -7.0767 -3.6007 39 1 -0.7511 -6.5826 -4.7883 40 1 -3.0565 -7.6619 -6.4145 41 1 -1.3900 -3.0586 -3.5159 42 1 -2.0857 -4.0404 -2.1902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224871626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = -7.467077 kcal Electronic energy + Delta-G solvation = -20740.065594 eV Core-core repulsion = 17685.268028 eV Total energy + Delta-G solvation = -3054.797565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.80627 -38.28535 -36.04266 -33.78655 -32.52138 -32.01079 -29.38497 -28.65258 -27.10583 -26.78364 -24.38595 -23.34086 -22.03333 -20.70630 -20.21588 -19.97363 -16.99981 -16.65141 -16.39459 -16.00308 -15.05333 -14.79103 -14.68666 -14.39318 -14.07940 -13.54579 -13.36283 -13.21695 -12.89408 -12.56552 -12.36475 -12.24886 -12.15490 -11.85196 -11.63260 -11.25078 -11.08718 -11.02423 -10.91920 -10.78270 -10.57102 -10.18754 -10.10744 -9.75552 -9.69305 -9.03937 -8.96003 -8.71406 -8.58141 -6.82126 -5.69635 -3.03717 1.16947 1.22395 3.41910 3.45628 3.47218 3.53089 3.96195 4.52246 4.64334 4.71525 4.82965 4.91086 5.04881 5.18425 5.27208 5.35244 5.44673 5.46853 5.51388 5.53816 5.55376 5.59130 5.73263 5.79585 5.81471 5.82292 5.90857 6.03230 6.13371 6.30249 6.33647 6.34708 6.49868 6.54040 6.56868 6.70876 6.75137 6.86141 7.56617 7.63679 7.65752 7.84113 8.27230 9.23096 9.83238 10.49200 11.42036 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029398 B = 0.003248 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.227056 B = 8617.596152 C = 9158.190190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.080 4.080 8 C -0.080 4.080 9 C 0.068 3.932 10 O -0.380 6.380 11 C 0.073 3.927 12 H 0.065 0.935 13 C -0.137 4.137 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.118 3.882 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.253 0.747 41 H 0.036 0.964 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 12.934 12.706 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.145 4.145 6 C -0.129 4.129 7 C -0.080 4.080 8 C -0.117 4.117 9 C -0.009 4.009 10 O -0.299 6.299 11 C 0.015 3.985 12 H 0.083 0.917 13 C -0.176 4.176 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.009 4.009 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.395 12.699 12.697 21.820 hybrid contribution -0.530 0.355 -0.952 1.146 sum 11.864 13.055 11.745 21.193 Atomic orbital electron populations 1.20937 0.91016 1.03520 1.02569 1.19859 0.96254 0.92565 0.99102 1.21036 0.94277 0.97453 1.01150 1.21119 0.94329 0.98004 1.00539 1.21109 0.99776 0.92539 1.01071 1.21091 0.93567 0.98271 0.99995 1.19659 0.93612 0.94281 1.00449 1.20490 1.00582 0.93685 0.96992 1.22390 0.95388 0.87060 0.96023 1.87845 1.74753 1.37911 1.29401 1.23407 0.96106 0.95901 0.83125 0.91690 1.22976 1.00356 0.93050 1.01178 1.21169 0.91565 0.88492 0.93376 1.44354 1.44397 1.07646 1.36806 1.19023 1.11793 0.97049 1.07867 0.90465 1.24813 1.00116 0.95850 0.99680 1.69951 1.44822 1.02455 1.39815 0.86175 0.81422 0.76869 0.81153 1.21563 1.21139 1.21165 1.21931 0.92404 0.93464 0.93054 0.91013 0.91468 0.90546 0.86134 0.86268 0.86200 0.85953 0.89911 0.90275 0.93612 0.93225 0.91885 0.91512 0.93601 0.93340 0.93664 0.94575 0.95520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.22 36.01 0.33 -0.86 16 2 C -0.08 -0.83 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 4 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 5 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.11 -1.13 9.68 -39.59 -0.38 -1.51 16 7 C -0.08 -0.89 5.13 -104.62 -0.54 -1.42 16 8 C -0.08 -0.93 5.02 -27.88 -0.14 -1.07 16 9 C 0.07 0.94 5.61 37.16 0.21 1.15 16 10 O -0.38 -6.49 10.16 -35.23 -0.36 -6.85 16 11 C 0.07 1.39 3.49 -24.58 -0.09 1.31 16 12 H 0.07 1.21 7.90 -51.93 -0.41 0.80 16 13 C -0.14 -2.74 6.69 -24.89 -0.17 -2.91 16 14 C 0.18 4.48 5.38 -3.06 -0.02 4.46 16 15 N -0.60 -16.03 3.39 -170.06 -0.58 -16.61 16 16 C -0.23 -6.54 10.28 -15.06 -0.15 -6.70 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -27.47 10.31 55.49 0.57 -26.90 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.12 2.60 6.97 -2.52 -0.02 2.58 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.08 0.82 5.40 -51.93 -0.28 0.54 16 28 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.08 0.95 7.01 -51.93 -0.36 0.58 16 33 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 34 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.05 0.69 6.88 -51.93 -0.36 0.33 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 39 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -31.21 338.76 -9.93 -41.13 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.80 Total: -1.81 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -2.85 Total: -11.38 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.00 Total: -43.51 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.36 Total: -6.85 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.21 -9.93 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224871626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.668 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds