Wall clock time and date at job start Mon Mar 30 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38252 * 119.99914 * 2 1 4 4 C 1.38212 * 120.00138 * 180.27658 * 3 2 1 5 5 C 1.38257 * 119.99902 * 359.75388 * 4 3 2 6 6 C 1.38210 * 119.99862 * 359.97386 * 5 4 3 7 7 C 1.38213 * 120.00163 * 179.75828 * 2 1 3 8 8 C 1.50701 * 120.00125 * 359.97438 * 7 2 1 9 9 C 1.53001 * 109.46853 * 84.73401 * 8 7 2 10 10 O 1.42899 * 109.46835 * 180.02562 * 9 8 7 11 11 C 1.42900 * 113.99779 * 180.02562 * 10 9 8 12 12 H 1.09002 * 110.88964 * 32.42357 * 11 10 9 13 13 C 1.55157 * 111.03819 * 156.33264 * 11 10 9 14 14 C 1.54334 * 103.02095 * 153.39191 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 H 1.08998 * 109.46537 * 270.24762 * 1 2 3 26 26 H 1.09000 * 109.47357 * 30.24850 * 1 2 3 27 27 H 1.09003 * 109.46954 * 150.25064 * 1 2 3 28 28 H 1.08006 * 120.00378 * 0.04712 * 3 2 1 29 29 H 1.08005 * 120.00342 * 179.77156 * 4 3 2 30 30 H 1.08002 * 120.00383 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.99912 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.46840 * 324.73438 * 8 7 2 33 33 H 1.08996 * 109.47480 * 204.73618 * 8 7 2 34 34 H 1.08996 * 109.46905 * 60.00285 * 9 8 7 35 35 H 1.08996 * 109.47064 * 299.99836 * 9 8 7 36 36 H 1.08998 * 110.71770 * 271.95360 * 13 11 10 37 37 H 1.09002 * 110.71853 * 35.04793 * 13 11 10 38 38 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 39 39 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 40 40 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 42 42 H 1.08999 * 110.36944 * 265.52330 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0058 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0007 7 6 2.1981 -1.1969 0.0050 8 6 1.4447 -2.5021 0.0111 9 6 1.0745 -2.8839 -1.4235 10 8 0.3596 -4.1211 -1.4176 11 6 -0.0348 -4.5706 -2.7155 12 1 0.6939 -4.2708 -3.4687 13 6 -0.2507 -6.1070 -2.7311 14 6 -1.2713 -6.3031 -3.8721 15 7 -1.9651 -5.0210 -4.0622 16 6 -2.9335 -4.7684 -4.9969 17 1 -3.3877 -3.7902 -5.0531 18 6 -3.3314 -5.7697 -5.8720 19 7 -2.7782 -6.9621 -5.8032 20 14 -4.6529 -5.4255 -7.1466 21 1 -4.8941 -6.6492 -7.9525 22 1 -5.9091 -5.0273 -6.4621 23 1 -4.2055 -4.3260 -8.0389 24 6 -1.4502 -4.0540 -3.0757 25 1 -0.3632 0.0044 1.0277 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1327 -0.0095 30 1 5.3517 0.0000 -0.0105 31 1 4.1207 -2.1322 -0.0008 32 1 0.5366 -2.3945 0.6044 33 1 2.0715 -3.2815 0.4444 34 1 1.9826 -2.9914 -2.0166 35 1 0.4477 -2.1045 -1.8566 36 1 0.6824 -6.6253 -2.9518 37 1 -0.6644 -6.4479 -1.7820 38 1 -1.9897 -7.0767 -3.6007 39 1 -0.7511 -6.5826 -4.7883 40 1 -3.0565 -7.6619 -6.4145 41 1 -1.3900 -3.0586 -3.5159 42 1 -2.0857 -4.0404 -2.1902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224871626.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:42 Heat of formation + Delta-G solvation = -23.820989 kcal Electronic energy + Delta-G solvation = -20740.774753 eV Core-core repulsion = 17685.268028 eV Total energy + Delta-G solvation = -3055.506724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60075 -39.79192 -37.65489 -34.82614 -34.01457 -33.16990 -31.16946 -29.79329 -28.67679 -27.70487 -26.34164 -24.36377 -22.80469 -22.06648 -21.92317 -21.27452 -18.97558 -18.02471 -17.24068 -16.91228 -16.71484 -16.20189 -15.77938 -15.74696 -15.49322 -14.90596 -14.55381 -14.07666 -14.05696 -13.97310 -13.74023 -13.62446 -13.30188 -13.01424 -12.94599 -12.83466 -12.64880 -12.37135 -12.13534 -12.08184 -12.00863 -11.81826 -11.73901 -11.67004 -11.43054 -10.72417 -10.46415 -9.69483 -9.46413 -8.94496 -7.86814 -5.24199 0.42460 0.50141 1.45742 1.49678 1.56031 2.43768 2.59280 2.91875 3.31669 3.71372 3.80451 3.89596 3.94599 4.02264 4.10959 4.14689 4.16298 4.28143 4.33658 4.42070 4.51054 4.59764 4.61964 4.72931 4.79742 4.81764 4.91892 4.94294 4.97090 5.00245 5.03717 5.10549 5.24386 5.36491 5.41604 5.61025 5.61574 5.63970 5.71014 5.77689 6.14089 6.15471 6.31300 7.06957 7.72868 8.37594 9.23487 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029398 B = 0.003248 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.227056 B = 8617.596152 C = 9158.190190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.125 4.125 5 C -0.133 4.133 6 C -0.122 4.122 7 C -0.097 4.097 8 C -0.071 4.071 9 C 0.065 3.935 10 O -0.384 6.384 11 C 0.091 3.909 12 H 0.073 0.927 13 C -0.125 4.125 14 C 0.186 3.814 15 N -0.626 5.626 16 C -0.249 4.249 17 H 0.083 0.917 18 C -0.065 4.065 19 N -0.951 5.951 20 Si 0.983 3.017 21 H -0.292 1.292 22 H -0.277 1.277 23 H -0.275 1.275 24 C 0.115 3.885 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.011 0.989 39 H 0.020 0.980 40 H 0.249 0.751 41 H 0.043 0.957 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.595 14.601 13.247 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.139 4.139 7 C -0.097 4.097 8 C -0.108 4.108 9 C -0.011 4.011 10 O -0.302 6.302 11 C 0.032 3.968 12 H 0.091 0.909 13 C -0.163 4.163 14 C 0.061 3.939 15 N -0.354 5.354 16 C -0.378 4.378 17 H 0.101 0.899 18 C -0.258 4.258 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.218 1.218 22 H -0.203 1.203 23 H -0.201 1.201 24 C -0.011 4.011 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.029 0.971 39 H 0.038 0.962 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.455 14.398 13.267 23.756 hybrid contribution -0.815 -0.081 -1.059 1.339 sum 12.639 14.317 12.207 22.666 Atomic orbital electron populations 1.20924 0.90758 1.03199 1.02996 1.20055 0.96704 0.92996 0.99536 1.21308 0.94880 0.97767 1.00920 1.21470 0.94311 0.99041 0.99439 1.21427 1.01008 0.92262 1.00374 1.21316 0.93386 0.99309 0.99933 1.19680 0.94121 0.93993 1.01892 1.20389 1.00720 0.94355 0.95333 1.22586 0.95171 0.85498 0.97839 1.87836 1.75095 1.39439 1.27864 1.23064 0.94502 0.94848 0.84362 0.90873 1.22809 0.99891 0.94310 0.99257 1.20923 0.91572 0.87417 0.93971 1.44662 1.44391 1.09072 1.37269 1.19445 1.12461 0.97426 1.08477 0.89934 1.25712 1.02506 0.95702 1.01871 1.70173 1.46123 1.03194 1.40493 0.85092 0.78729 0.76669 0.78463 1.21829 1.20269 1.20067 1.22067 0.94063 0.93044 0.91899 0.90250 0.90625 0.91948 0.84559 0.83989 0.84089 0.84923 0.90132 0.89707 0.92884 0.93483 0.89304 0.90853 0.97058 0.96217 0.94196 0.93900 0.95850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 9.22 71.24 0.66 -1.58 16 2 C -0.09 -1.86 5.88 -19.87 -0.12 -1.98 16 3 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 4 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 5 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 6 C -0.12 -2.25 9.68 22.27 0.22 -2.04 16 7 C -0.10 -2.01 5.13 -19.87 -0.10 -2.11 16 8 C -0.07 -1.54 5.02 29.85 0.15 -1.39 16 9 C 0.07 1.71 5.61 71.98 0.40 2.11 16 10 O -0.38 -12.47 10.16 -148.98 -1.51 -13.99 16 11 C 0.09 3.37 3.49 31.99 0.11 3.48 16 12 H 0.07 2.61 7.90 -2.39 -0.02 2.59 16 13 C -0.12 -4.87 6.69 31.79 0.21 -4.66 16 14 C 0.19 9.55 5.38 86.73 0.47 10.02 16 15 N -0.63 -33.68 3.39 -691.95 -2.35 -36.03 16 16 C -0.25 -14.41 10.28 84.03 0.86 -13.54 16 17 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 18 C -0.06 -3.76 5.49 84.86 0.47 -3.29 16 19 N -0.95 -58.08 10.31 21.65 0.22 -57.86 16 20 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 C 0.12 5.03 6.97 86.86 0.61 5.63 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 27 H 0.06 1.30 5.40 -2.39 -0.01 1.29 16 28 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 30 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 31 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.08 1.77 7.01 -2.38 -0.02 1.75 16 33 H 0.08 1.73 8.05 -2.39 -0.02 1.71 16 34 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 35 H 0.05 1.26 6.88 -2.39 -0.02 1.25 16 36 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.01 0.64 7.52 -2.39 -0.02 0.62 16 39 H 0.02 1.10 7.37 -2.38 -0.02 1.09 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -67.24 338.76 3.96 -63.28 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.98 Total: 11.42 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.59 Total: -15.07 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -2.13 Total: -93.89 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.51 Total: -13.99 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -67.24 3.96 -63.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224871626.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.457 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds