Wall clock time and date at job start Mon Mar 30 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38248 * 120.00097 * 2 1 4 4 C 1.38218 * 120.00103 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99752 * 359.97438 * 4 3 2 6 6 C 1.38213 * 120.00153 * 359.81565 * 5 4 3 7 7 C 1.38211 * 119.99870 * 180.02562 * 2 1 3 8 8 C 1.50705 * 119.99991 * 359.97438 * 7 2 1 9 9 C 1.53005 * 109.46922 * 85.00087 * 8 7 2 10 10 O 1.42900 * 109.46788 * 180.02562 * 9 8 7 11 11 C 1.42902 * 113.99794 * 180.02562 * 10 9 8 12 12 H 1.08997 * 110.63685 * 328.30986 * 11 10 9 13 13 C 1.55159 * 110.71995 * 204.97655 * 11 10 9 14 14 C 1.55122 * 101.48671 * 205.96881 * 13 11 10 15 15 N 1.47429 * 104.72375 * 37.29269 * 14 13 11 16 16 C 1.36933 * 125.64543 * 155.81854 * 15 14 13 17 17 H 1.08005 * 119.99346 * 193.32530 * 16 15 14 18 18 C 1.38803 * 120.00505 * 13.31838 * 16 15 14 19 19 N 1.31626 * 119.99731 * 27.27804 * 18 16 15 20 20 Si 1.86804 * 120.00452 * 207.27269 * 18 16 15 21 21 H 1.48494 * 109.46849 * 90.00056 * 20 18 16 22 22 H 1.48503 * 109.46862 * 330.00133 * 20 18 16 23 23 H 1.48496 * 109.47029 * 210.00372 * 20 18 16 24 24 C 1.47019 * 108.70035 * 335.55720 * 15 14 13 25 25 H 1.09002 * 109.46827 * 269.97978 * 1 2 3 26 26 H 1.09003 * 109.46601 * 29.97678 * 1 2 3 27 27 H 1.08995 * 109.47355 * 149.97825 * 1 2 3 28 28 H 1.08001 * 120.00451 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00028 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.00242 * 179.97438 * 5 4 3 31 31 H 1.07997 * 120.00417 * 180.22280 * 6 5 4 32 32 H 1.08999 * 109.47009 * 325.00611 * 8 7 2 33 33 H 1.08996 * 109.47486 * 205.00133 * 8 7 2 34 34 H 1.08999 * 109.46850 * 60.00427 * 9 8 7 35 35 H 1.09000 * 109.47046 * 299.99803 * 9 8 7 36 36 H 1.09002 * 111.00506 * 324.20926 * 13 11 10 37 37 H 1.09003 * 111.00345 * 88.05533 * 13 11 10 38 38 H 1.09001 * 110.49465 * 278.45297 * 14 13 11 39 39 H 1.08995 * 110.34590 * 156.05890 * 14 13 11 40 40 H 0.96994 * 119.99479 * 5.84381 * 19 18 16 41 41 H 1.09000 * 109.88468 * 120.70089 * 24 15 14 42 42 H 1.09006 * 109.88142 * 241.71208 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0039 7 6 2.1981 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 6 1.0801 -2.8805 -1.4376 10 8 0.3651 -4.1178 -1.4375 11 6 -0.0241 -4.5642 -2.7380 12 1 -0.2207 -3.7152 -3.3927 13 6 -1.2632 -5.4940 -2.6512 14 6 -1.0944 -6.3539 -3.9312 15 7 0.3591 -6.5713 -4.0476 16 6 0.9604 -7.6108 -4.7056 17 1 2.0122 -7.8068 -4.5585 18 6 0.2181 -8.4126 -5.5616 19 7 -0.8455 -7.9242 -6.1639 20 14 0.7285 -10.1848 -5.8589 21 1 0.0665 -11.0644 -4.8622 22 1 2.2025 -10.3047 -5.7233 23 1 0.3224 -10.5940 -7.2274 24 6 1.0561 -5.4837 -3.3456 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6584 2.1326 -0.0004 29 1 4.1205 2.1325 -0.0010 30 1 5.3517 -0.0002 -0.0014 31 1 4.1206 -2.1323 0.0075 32 1 0.5340 -2.3959 0.5892 33 1 2.0695 -3.2825 0.4334 34 1 1.9906 -2.9867 -2.0273 35 1 0.4550 -2.1001 -1.8714 36 1 -1.2261 -6.1117 -1.7538 37 1 -2.1876 -4.9176 -2.6888 38 1 -1.4688 -5.8177 -4.8032 39 1 -1.6126 -7.3062 -3.8190 40 1 -1.0624 -6.9829 -6.0772 41 1 1.6814 -5.8948 -2.5531 42 1 1.6709 -4.9224 -4.0492 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224871627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:46 Heat of formation + Delta-G solvation = -27.913462 kcal Electronic energy + Delta-G solvation = -20719.405795 eV Core-core repulsion = 17663.721608 eV Total energy + Delta-G solvation = -3055.684187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.65395 -39.97172 -37.86934 -34.95646 -34.12534 -33.19742 -31.13798 -29.89636 -28.74117 -27.70584 -26.29542 -24.42880 -22.84382 -22.14230 -22.03775 -21.31986 -19.68155 -18.15801 -17.20121 -17.08311 -16.61362 -16.25066 -15.73605 -15.65697 -15.51557 -15.14168 -15.00702 -14.44175 -14.07845 -14.00231 -13.78173 -13.74582 -13.11453 -13.06310 -12.92357 -12.70128 -12.63088 -12.51206 -12.30099 -12.13089 -11.89272 -11.80091 -11.76736 -11.61436 -11.57687 -10.67519 -10.50191 -9.72931 -9.49400 -9.10004 -8.37824 -5.37652 0.39139 0.46818 1.56456 1.64734 1.82698 2.44725 2.63996 2.87983 3.14327 3.50296 3.66571 3.82018 3.87578 3.90736 4.01137 4.06791 4.10811 4.24251 4.25801 4.36444 4.38594 4.48012 4.55032 4.60018 4.78049 4.78898 4.80179 4.81899 4.89381 4.94392 4.97420 5.00773 5.01616 5.19964 5.23349 5.34442 5.58282 5.59071 5.61088 5.74012 6.12415 6.20519 6.26687 6.84463 7.64952 8.21254 8.95540 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034248 B = 0.003121 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.374593 B = 8970.712425 C = 9450.579586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.134 4.134 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.071 4.071 9 C 0.065 3.935 10 O -0.383 6.383 11 C 0.095 3.905 12 H 0.082 0.918 13 C -0.113 4.113 14 C 0.146 3.854 15 N -0.627 5.627 16 C -0.352 4.352 17 H 0.059 0.941 18 C -0.077 4.077 19 N -0.946 5.946 20 Si 1.121 2.879 21 H -0.283 1.283 22 H -0.273 1.273 23 H -0.290 1.290 24 C 0.113 3.887 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.015 0.985 39 H 0.028 0.972 40 H 0.258 0.742 41 H 0.027 0.973 42 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 19.431 14.704 24.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.144 4.144 7 C -0.097 4.097 8 C -0.108 4.108 9 C -0.011 4.011 10 O -0.302 6.302 11 C 0.036 3.964 12 H 0.100 0.900 13 C -0.152 4.152 14 C 0.021 3.979 15 N -0.355 5.355 16 C -0.480 4.480 17 H 0.077 0.923 18 C -0.273 4.273 19 N -0.589 5.589 20 Si 0.945 3.055 21 H -0.209 1.209 22 H -0.198 1.198 23 H -0.216 1.216 24 C -0.012 4.012 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 4.291 17.868 14.089 23.156 hybrid contribution 0.764 1.397 0.166 1.601 sum 5.056 19.265 14.255 24.493 Atomic orbital electron populations 1.20934 0.90210 1.03429 1.03172 1.20078 0.97044 0.92654 0.99329 1.21335 0.94706 0.97918 1.00704 1.21476 0.94525 0.98837 0.99361 1.21408 1.00939 0.92362 1.00513 1.21304 0.93740 0.99133 1.00223 1.19666 0.93921 0.94164 1.01991 1.20387 1.00904 0.94199 0.95318 1.22606 0.95377 0.85309 0.97836 1.87876 1.75016 1.39921 1.27371 1.22905 0.93662 0.95539 0.84270 0.90029 1.22839 0.97349 0.97338 0.97635 1.21542 0.85042 0.96777 0.94533 1.44762 1.01919 1.26401 1.62420 1.20083 0.96449 1.07694 1.23767 0.92307 1.27216 0.97171 1.08916 0.93958 1.70871 1.31267 1.15999 1.40769 0.82774 0.75707 0.70903 0.76104 1.20937 1.19815 1.21594 1.21875 0.95233 0.89643 0.94499 0.90148 0.90300 0.91596 0.84148 0.83917 0.84405 0.85674 0.89357 0.90590 0.94074 0.92126 0.90718 0.87898 0.96718 0.95358 0.93169 0.95497 0.96601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.22 71.24 0.66 -1.17 16 2 C -0.09 -1.69 5.88 -19.87 -0.12 -1.81 16 3 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 4 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 5 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 6 C -0.13 -2.53 9.68 22.27 0.22 -2.31 16 7 C -0.10 -2.03 5.13 -19.87 -0.10 -2.13 16 8 C -0.07 -1.55 5.02 29.85 0.15 -1.40 16 9 C 0.06 1.68 5.60 71.98 0.40 2.09 16 10 O -0.38 -12.37 10.07 -148.98 -1.50 -13.87 16 11 C 0.09 3.40 3.40 31.78 0.11 3.51 16 12 H 0.08 2.67 7.88 -2.39 -0.02 2.65 16 13 C -0.11 -4.20 6.82 32.06 0.22 -3.98 16 14 C 0.15 7.14 5.22 86.93 0.45 7.60 16 15 N -0.63 -34.02 3.33 -691.57 -2.30 -36.32 16 16 C -0.35 -21.02 10.05 84.03 0.84 -20.18 16 17 H 0.06 3.51 7.96 -2.91 -0.02 3.49 16 18 C -0.08 -4.57 5.09 84.86 0.43 -4.13 16 19 N -0.95 -59.34 12.82 21.65 0.28 -59.06 16 20 Si 1.12 52.64 30.00 68.60 2.06 54.69 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.11 5.11 7.01 86.73 0.61 5.72 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 27 H 0.07 1.09 5.43 -2.39 -0.01 1.08 16 28 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 29 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.09 1.80 6.99 -2.39 -0.02 1.78 16 33 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.42 6.87 -2.39 -0.02 1.41 16 36 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.02 0.76 6.84 -2.39 -0.02 0.75 16 39 H 0.03 1.52 7.73 -2.39 -0.02 1.50 16 40 H 0.26 16.27 5.83 -92.71 -0.54 15.73 16 41 H 0.03 1.25 8.06 -2.39 -0.02 1.23 16 42 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -70.57 338.12 4.28 -66.30 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.21 Total: 12.14 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.54 Total: -23.87 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -2.02 Total: -95.39 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.50 Total: -13.87 kcal Atomic # 14 Polarization: 52.64 SS G_CDS: 2.06 Total: 54.69 kcal Total: -70.57 4.28 -66.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224871627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.382 kcal (2) G-P(sol) polarization free energy of solvation -70.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds