Wall clock time and date at job start Mon Mar 30 2020 02:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.99791 * 2 1 4 4 C 1.38213 * 119.99645 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00230 * 359.76902 * 4 3 2 6 6 C 1.38219 * 119.99811 * 0.46249 * 5 4 3 7 7 C 1.50700 * 119.99680 * 179.78826 * 6 5 4 8 8 C 1.52999 * 109.46838 * 269.72573 * 7 6 5 9 9 O 1.42900 * 109.46944 * 180.02562 * 8 7 6 10 10 C 1.42903 * 114.00219 * 179.97438 * 9 8 7 11 11 C 1.53932 * 113.73355 * 113.26987 * 10 9 8 12 12 N 1.47959 * 86.18045 * 90.64119 * 11 10 9 13 13 C 1.46902 * 110.99905 * 137.58303 * 12 11 10 14 14 C 1.50699 * 109.47319 * 70.64321 * 13 12 11 15 15 H 1.07998 * 119.99582 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00183 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99663 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00028 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47291 * 59.99724 * 18 16 14 20 20 H 1.48500 * 109.47087 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47356 * 299.99700 * 18 16 14 22 22 C 1.47957 * 90.76368 * 24.69138 * 12 11 10 23 23 C 1.38211 * 120.00002 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47446 * 270.02233 * 1 2 3 25 25 H 1.08998 * 109.47420 * 30.02615 * 1 2 3 26 26 H 1.09005 * 109.47306 * 150.02278 * 1 2 3 27 27 H 1.07997 * 119.99928 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.99524 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.00199 * 180.24890 * 5 4 3 30 30 H 1.08999 * 109.46717 * 149.73191 * 7 6 5 31 31 H 1.08995 * 109.47209 * 29.72765 * 7 6 5 32 32 H 1.08997 * 109.47311 * 60.00091 * 8 7 6 33 33 H 1.09003 * 109.47042 * 300.00019 * 8 7 6 34 34 H 1.09000 * 113.00692 * 341.63910 * 10 9 8 35 35 H 1.09004 * 113.75969 * 204.95914 * 11 10 9 36 36 H 1.08999 * 113.76302 * 336.32370 * 11 10 9 37 37 H 1.09007 * 109.46697 * 190.64055 * 13 12 11 38 38 H 1.09001 * 109.46915 * 310.63777 * 13 12 11 39 39 H 0.97007 * 119.99712 * 180.02562 * 17 16 14 40 40 H 1.09000 * 113.75975 * 220.99328 * 22 12 11 41 41 H 1.08998 * 113.76273 * 89.62912 * 22 12 11 42 42 H 1.07999 * 119.99942 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0059 6 6 3.5806 -1.1969 0.0011 7 6 4.3342 -2.5020 0.0021 8 6 4.5892 -2.9447 -1.4401 9 8 5.3032 -4.1825 -1.4391 10 6 5.5934 -4.6872 -2.7442 11 6 7.0947 -4.6995 -3.0841 12 7 7.1091 -6.0690 -2.5244 13 6 7.9123 -6.9710 -3.3606 14 6 9.3710 -6.6186 -3.2223 15 1 9.6712 -5.8056 -2.5779 16 6 10.3220 -7.3334 -3.9191 17 7 9.9562 -8.3231 -4.7041 18 14 12.1300 -6.8961 -3.7481 19 1 12.5420 -7.0397 -2.3287 20 1 12.9419 -7.8080 -4.5934 21 1 12.3436 -5.4933 -4.1860 22 6 5.6661 -6.2233 -2.8125 23 6 2.1981 -1.1969 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6582 2.1326 -0.0004 28 1 4.1204 2.1328 0.0001 29 1 5.3516 0.0001 0.0104 30 1 3.7450 -3.2613 0.5164 31 1 5.2865 -2.3712 0.5158 32 1 5.1782 -2.1854 -1.9545 33 1 3.6368 -3.0755 -1.9538 34 1 4.9714 -4.2424 -3.5210 35 1 7.3033 -4.6598 -4.1533 36 1 7.6812 -3.9836 -2.5083 37 1 7.7552 -8.0007 -3.0391 38 1 7.6102 -6.8657 -4.4026 39 1 10.6254 -8.8263 -5.1941 40 1 5.1112 -6.7249 -2.0197 41 1 5.4568 -6.6293 -3.8022 42 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224872861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:02 Heat of formation + Delta-G solvation = 2.617688 kcal Electronic energy + Delta-G solvation = -20051.130574 eV Core-core repulsion = 16996.770317 eV Total energy + Delta-G solvation = -3054.360257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77485 -39.28338 -36.61022 -33.95698 -32.78217 -32.31788 -29.42436 -28.38290 -27.11737 -25.56887 -24.89558 -23.57104 -22.17577 -21.63252 -20.50802 -19.24065 -16.76447 -16.58571 -16.24481 -15.93955 -15.38376 -15.02250 -14.94590 -14.47738 -14.05489 -13.84057 -13.52243 -13.33897 -13.25734 -12.98063 -12.67039 -12.32064 -12.22977 -11.93286 -11.66778 -11.46763 -11.22903 -11.19444 -10.96643 -10.90111 -10.61552 -10.50523 -10.34484 -9.55503 -9.14730 -9.14255 -9.00180 -8.80556 -8.45079 -7.64039 -6.02199 -4.03607 1.10837 1.16379 3.34588 3.38097 3.41899 3.44248 3.79065 4.44175 4.53725 4.59733 4.72261 4.90562 4.91549 4.95461 5.05239 5.08653 5.25522 5.29709 5.31528 5.33583 5.37264 5.40261 5.44340 5.52177 5.73118 5.77816 5.90759 5.94695 6.04411 6.07456 6.24689 6.27049 6.34125 6.37022 6.45542 6.55376 6.80010 6.81985 7.24192 7.54128 7.69072 7.93600 8.18348 8.48227 9.03974 9.60618 11.09120 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.002660 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.329755 B =10525.341494 C =11089.290171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.127 4.127 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.073 4.073 7 C -0.080 4.080 8 C 0.067 3.933 9 O -0.354 6.354 10 C 0.056 3.944 11 C 0.003 3.997 12 N -0.468 5.468 13 C 0.158 3.842 14 C -0.508 4.508 15 H 0.061 0.939 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.003 4.003 23 C -0.116 4.116 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.032 0.968 38 H -0.003 1.003 39 H 0.262 0.738 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 17.868 7.482 26.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.138 4.138 6 C -0.074 4.074 7 C -0.117 4.117 8 C -0.010 4.010 9 O -0.272 6.272 10 C -0.002 4.002 11 C -0.126 4.126 12 N -0.191 5.191 13 C 0.032 3.968 14 C -0.547 4.547 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.132 4.132 23 C -0.134 4.134 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.015 0.985 39 H 0.071 0.929 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.847 17.489 8.185 26.293 hybrid contribution 0.824 0.301 -1.159 1.453 sum -17.023 17.790 7.026 25.605 Atomic orbital electron populations 1.20795 0.91241 1.02781 1.02306 1.19918 0.96049 0.93165 0.99629 1.21023 0.94317 0.97425 1.01698 1.21137 0.94288 0.98013 0.99894 1.21123 1.00122 0.91940 1.00587 1.19780 0.93622 0.94754 0.99198 1.20481 1.00914 0.93626 0.96714 1.22442 0.95345 0.86856 0.96309 1.87957 1.75472 1.37039 1.26733 1.23704 0.96651 0.95449 0.84426 1.24165 0.94259 0.94949 0.99230 1.68594 1.01649 1.02302 1.46532 1.20233 0.93373 0.93015 0.90215 1.21071 0.90754 1.16643 1.26235 0.92059 1.25000 0.99324 0.95062 0.95247 1.69953 1.34014 1.20880 1.29028 0.86542 0.84484 0.78143 0.78141 1.20112 1.21326 1.20274 1.24150 0.94503 0.93961 1.00621 1.20978 0.93548 0.97686 1.01156 0.91200 0.91615 0.91481 0.86293 0.86051 0.85840 0.90079 0.89851 0.93366 0.93611 0.91764 0.91037 0.90126 0.94996 0.98514 0.92871 0.89828 0.91170 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 2 C -0.09 -0.77 5.88 -104.62 -0.62 -1.38 16 3 C -0.13 -1.07 9.70 -39.58 -0.38 -1.46 16 4 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 5 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 6 C -0.07 -0.76 5.13 -104.62 -0.54 -1.29 16 7 C -0.08 -0.88 5.72 -27.88 -0.16 -1.04 16 8 C 0.07 0.85 5.76 37.16 0.21 1.06 16 9 O -0.35 -5.85 10.36 -35.23 -0.37 -6.21 16 10 C 0.06 0.95 4.50 -25.80 -0.12 0.83 16 11 C 0.00 0.07 7.29 -2.77 -0.02 0.05 16 12 N -0.47 -10.83 6.25 -239.99 -1.50 -12.33 16 13 C 0.16 4.27 4.58 -4.98 -0.02 4.25 16 14 C -0.51 -14.82 8.84 -34.44 -0.30 -15.13 16 15 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 18 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C 0.00 -0.06 7.81 -2.77 -0.02 -0.08 16 23 C -0.12 -1.11 9.36 -39.59 -0.37 -1.48 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 26 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.91 7.87 -51.93 -0.41 0.50 16 35 H 0.07 1.44 7.78 -51.93 -0.40 1.04 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 37 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.00 -0.08 7.69 -51.93 -0.40 -0.48 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.07 1.26 7.79 -51.93 -0.40 0.85 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -32.13 351.22 -10.78 -42.92 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -7.07 Total: -2.80 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.86 Total: -17.50 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: -0.76 Total: -38.80 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.37 Total: -6.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.13 -10.78 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224872861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.534 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds