Wall clock time and date at job start Mon Mar 30 2020 02:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38260 * 119.99791 * 2 1 4 4 C 1.38213 * 119.99645 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00230 * 359.76902 * 4 3 2 6 6 C 1.38219 * 119.99811 * 0.46249 * 5 4 3 7 7 C 1.50700 * 119.99680 * 179.78826 * 6 5 4 8 8 C 1.52999 * 109.46838 * 269.72573 * 7 6 5 9 9 O 1.42900 * 109.46944 * 180.02562 * 8 7 6 10 10 C 1.42903 * 114.00219 * 179.97438 * 9 8 7 11 11 C 1.53932 * 113.73355 * 113.26987 * 10 9 8 12 12 N 1.47959 * 86.18045 * 90.64119 * 11 10 9 13 13 C 1.46902 * 110.99905 * 137.58303 * 12 11 10 14 14 C 1.50699 * 109.47319 * 70.64321 * 13 12 11 15 15 H 1.07998 * 119.99582 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00183 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99663 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00028 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47291 * 59.99724 * 18 16 14 20 20 H 1.48500 * 109.47087 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47356 * 299.99700 * 18 16 14 22 22 C 1.47957 * 90.76368 * 24.69138 * 12 11 10 23 23 C 1.38211 * 120.00002 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47446 * 270.02233 * 1 2 3 25 25 H 1.08998 * 109.47420 * 30.02615 * 1 2 3 26 26 H 1.09005 * 109.47306 * 150.02278 * 1 2 3 27 27 H 1.07997 * 119.99928 * 359.97438 * 3 2 1 28 28 H 1.08007 * 119.99524 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.00199 * 180.24890 * 5 4 3 30 30 H 1.08999 * 109.46717 * 149.73191 * 7 6 5 31 31 H 1.08995 * 109.47209 * 29.72765 * 7 6 5 32 32 H 1.08997 * 109.47311 * 60.00091 * 8 7 6 33 33 H 1.09003 * 109.47042 * 300.00019 * 8 7 6 34 34 H 1.09000 * 113.00692 * 341.63910 * 10 9 8 35 35 H 1.09004 * 113.75969 * 204.95914 * 11 10 9 36 36 H 1.08999 * 113.76302 * 336.32370 * 11 10 9 37 37 H 1.09007 * 109.46697 * 190.64055 * 13 12 11 38 38 H 1.09001 * 109.46915 * 310.63777 * 13 12 11 39 39 H 0.97007 * 119.99712 * 180.02562 * 17 16 14 40 40 H 1.09000 * 113.75975 * 220.99328 * 22 12 11 41 41 H 1.08998 * 113.76273 * 89.62912 * 22 12 11 42 42 H 1.07999 * 119.99942 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0059 6 6 3.5806 -1.1969 0.0011 7 6 4.3342 -2.5020 0.0021 8 6 4.5892 -2.9447 -1.4401 9 8 5.3032 -4.1825 -1.4391 10 6 5.5934 -4.6872 -2.7442 11 6 7.0947 -4.6995 -3.0841 12 7 7.1091 -6.0690 -2.5244 13 6 7.9123 -6.9710 -3.3606 14 6 9.3710 -6.6186 -3.2223 15 1 9.6712 -5.8056 -2.5779 16 6 10.3220 -7.3334 -3.9191 17 7 9.9562 -8.3231 -4.7041 18 14 12.1300 -6.8961 -3.7481 19 1 12.5420 -7.0397 -2.3287 20 1 12.9419 -7.8080 -4.5934 21 1 12.3436 -5.4933 -4.1860 22 6 5.6661 -6.2233 -2.8125 23 6 2.1981 -1.1969 0.0005 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6582 2.1326 -0.0004 28 1 4.1204 2.1328 0.0001 29 1 5.3516 0.0001 0.0104 30 1 3.7450 -3.2613 0.5164 31 1 5.2865 -2.3712 0.5158 32 1 5.1782 -2.1854 -1.9545 33 1 3.6368 -3.0755 -1.9538 34 1 4.9714 -4.2424 -3.5210 35 1 7.3033 -4.6598 -4.1533 36 1 7.6812 -3.9836 -2.5083 37 1 7.7552 -8.0007 -3.0391 38 1 7.6102 -6.8657 -4.4026 39 1 10.6254 -8.8263 -5.1941 40 1 5.1112 -6.7249 -2.0197 41 1 5.4568 -6.6293 -3.8022 42 1 1.6581 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224872861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:02 Heat of formation + Delta-G solvation = -17.279192 kcal Electronic energy + Delta-G solvation = -20051.993367 eV Core-core repulsion = 16996.770317 eV Total energy + Delta-G solvation = -3055.223051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93184 -40.34881 -37.91623 -35.10813 -34.59667 -33.02442 -31.08421 -29.50940 -27.70685 -27.27958 -26.69913 -24.47548 -23.57088 -22.84569 -21.30808 -20.70036 -18.60815 -17.81771 -17.34913 -17.03335 -16.85664 -16.23412 -16.07944 -15.75453 -15.29709 -15.04490 -14.94084 -14.44947 -14.09793 -13.92764 -13.75997 -13.68678 -13.31597 -13.19597 -12.98425 -12.84388 -12.64725 -12.48697 -12.32911 -12.09337 -12.03573 -11.87625 -11.74547 -11.38282 -11.20929 -10.66326 -10.44927 -9.69795 -9.48430 -9.45986 -8.25122 -6.35837 0.41479 0.49075 1.37923 1.41760 1.49923 2.37581 2.47019 2.88073 3.07353 3.37116 3.52271 3.87097 3.92257 3.97690 4.07659 4.19245 4.25163 4.30100 4.44182 4.49028 4.53864 4.54946 4.60177 4.70421 4.73596 4.77922 4.85265 4.90997 4.91887 5.00032 5.01680 5.06945 5.13613 5.23735 5.33564 5.52305 5.58672 5.70126 5.73473 5.78459 6.12434 6.14546 6.32098 6.44862 6.78973 7.33957 8.86369 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.002660 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.329755 B =10525.341494 C =11089.290171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.132 4.132 4 C -0.121 4.121 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.073 4.073 8 C 0.065 3.935 9 O -0.374 6.374 10 C 0.082 3.918 11 C -0.002 4.002 12 N -0.495 5.495 13 C 0.174 3.826 14 C -0.531 4.531 15 H 0.056 0.944 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.971 3.029 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.005 4.005 23 C -0.127 4.127 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.000 1.000 38 H -0.021 1.021 39 H 0.266 0.734 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.016 19.734 7.677 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.150 4.150 4 C -0.139 4.139 5 C -0.153 4.153 6 C -0.086 4.086 7 C -0.111 4.111 8 C -0.011 4.011 9 O -0.292 6.292 10 C 0.023 3.977 11 C -0.131 4.131 12 N -0.218 5.218 13 C 0.047 3.953 14 C -0.569 4.569 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.795 3.205 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.134 4.134 23 C -0.145 4.145 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.018 0.982 38 H -0.003 1.003 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.641 19.371 8.390 28.162 hybrid contribution 0.978 -0.234 -1.175 1.547 sum -17.662 19.137 7.214 27.022 Atomic orbital electron populations 1.20837 0.89566 1.03572 1.03037 1.20252 0.97420 0.92959 0.98872 1.21353 0.94402 0.98317 1.00909 1.21413 0.94765 0.98401 0.99343 1.21283 1.00500 0.92347 1.01188 1.19753 0.94018 0.94373 1.00425 1.20395 1.00698 0.94236 0.95726 1.22640 0.95603 0.85294 0.97551 1.87935 1.76017 1.38762 1.26533 1.23400 0.94633 0.94014 0.85658 1.24201 0.97146 0.92981 0.98771 1.68511 1.03841 1.03160 1.46260 1.19895 0.93531 0.92271 0.89620 1.21361 0.92175 1.16834 1.26534 0.92612 1.25939 1.04355 0.94719 0.94585 1.70071 1.35779 1.21727 1.29619 0.85416 0.78298 0.78439 0.78356 1.19556 1.20387 1.19058 1.24235 0.91670 0.96137 1.01322 1.21157 0.93395 0.98558 1.01425 0.90416 0.90478 0.91087 0.84225 0.84259 0.85598 0.90026 0.90659 0.93009 0.92053 0.88083 0.91424 0.90648 0.98200 1.00319 0.92507 0.89117 0.90345 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.10 -1.48 5.88 -19.87 -0.12 -1.60 16 3 C -0.13 -1.96 9.70 22.27 0.22 -1.74 16 4 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 5 C -0.14 -2.52 9.70 22.27 0.22 -2.30 16 6 C -0.09 -1.68 5.13 -19.87 -0.10 -1.78 16 7 C -0.07 -1.56 5.72 29.85 0.17 -1.39 16 8 C 0.07 1.54 5.76 71.98 0.41 1.95 16 9 O -0.37 -11.85 10.36 -148.98 -1.54 -13.40 16 10 C 0.08 2.62 4.50 31.24 0.14 2.76 16 11 C 0.00 -0.07 7.29 86.40 0.63 0.56 16 12 N -0.49 -23.25 6.25 -916.40 -5.73 -28.98 16 13 C 0.17 9.72 4.58 85.56 0.39 10.12 16 14 C -0.53 -31.57 8.84 25.60 0.23 -31.34 16 15 H 0.06 3.30 7.80 -2.91 -0.02 3.27 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 18 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.00 -0.17 7.81 86.41 0.67 0.50 16 23 C -0.13 -2.27 9.36 22.27 0.21 -2.06 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.62 8.09 -2.39 -0.02 0.60 16 26 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 27 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 28 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 30 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 31 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 2.56 7.87 -2.39 -0.02 2.54 16 35 H 0.07 2.74 7.78 -2.38 -0.02 2.72 16 36 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 38 H -0.02 -1.21 7.69 -2.39 -0.02 -1.23 16 39 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.08 2.78 7.79 -2.39 -0.02 2.76 16 42 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -69.32 351.22 0.47 -68.85 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.97 Total: 10.86 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 4.47 Total: -27.89 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -5.45 Total: -85.87 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.54 Total: -13.40 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -69.32 0.47 -68.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224872861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.574 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds