Wall clock time and date at job start Mon Mar 30 2020 02:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38286 * 119.96907 * 2 1 4 4 C 1.38244 * 120.10889 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.05862 * 359.67088 * 4 3 2 6 6 C 1.50699 * 120.03207 * 180.29856 * 5 4 3 7 7 C 1.38711 * 119.93913 * 0.58044 * 5 4 3 8 8 O 1.35904 * 120.05566 * 179.71617 * 7 5 4 9 9 C 1.42894 * 117.00199 * 276.51623 * 8 7 5 10 10 H 1.08995 * 110.89011 * 26.10238 * 9 8 7 11 11 C 1.55155 * 111.00531 * 150.03434 * 9 8 7 12 12 C 1.54334 * 103.02405 * 153.37888 * 11 9 8 13 13 N 1.47026 * 107.26301 * 338.13789 * 12 11 9 14 14 C 1.36933 * 125.64673 * 178.84615 * 13 12 11 15 15 H 1.07998 * 120.00093 * 179.69125 * 14 13 12 16 16 C 1.38813 * 119.99823 * 359.69667 * 14 13 12 17 17 N 1.31616 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99553 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46859 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47315 * 299.99522 * 18 16 14 21 21 H 1.48489 * 109.47479 * 60.00104 * 18 16 14 22 22 C 1.47424 * 108.70216 * 358.58777 * 13 12 11 23 23 C 1.38122 * 119.97535 * 179.97438 * 2 1 3 24 24 C 1.50702 * 120.02664 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46797 * 270.02137 * 1 2 3 26 26 H 1.08990 * 109.47349 * 30.02378 * 1 2 3 27 27 H 1.09008 * 109.47128 * 150.02762 * 1 2 3 28 28 H 1.07999 * 119.94811 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.97080 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47485 * 270.27988 * 6 5 4 31 31 H 1.09004 * 109.46687 * 30.27801 * 6 5 4 32 32 H 1.09004 * 109.47198 * 150.28008 * 6 5 4 33 33 H 1.09004 * 110.71698 * 271.93841 * 11 9 8 34 34 H 1.09002 * 110.72254 * 35.03231 * 11 9 8 35 35 H 1.08996 * 109.99496 * 218.66203 * 12 11 9 36 36 H 1.09002 * 109.77828 * 97.49219 * 12 11 9 37 37 H 0.97004 * 119.99815 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.36447 * 143.19629 * 22 13 12 39 39 H 1.08999 * 110.36284 * 265.40423 * 22 13 12 40 40 H 1.09007 * 109.46912 * 276.09698 * 24 23 2 41 41 H 1.09000 * 109.47033 * 36.09186 * 24 23 2 42 42 H 1.08995 * 109.47180 * 156.09859 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2013 -0.0005 5 6 4.2752 0.0072 0.0058 6 6 5.7822 0.0116 0.0120 7 6 3.5846 -1.1958 0.0005 8 8 4.2658 -2.3717 0.0009 9 6 4.7212 -2.8581 -1.2632 10 1 4.8641 -2.0379 -1.9666 11 6 6.0223 -3.6882 -1.1038 12 6 5.9732 -4.6473 -2.3119 13 7 4.5691 -4.7406 -2.7381 14 6 4.1032 -5.4760 -3.7951 15 1 3.0479 -5.4828 -4.0248 16 6 4.9872 -6.2127 -4.5714 17 7 6.2733 -6.2041 -4.2918 18 14 4.3514 -7.2164 -6.0129 19 1 5.4875 -7.9066 -6.6748 20 1 3.3780 -8.2251 -5.5227 21 1 3.6834 -6.3162 -6.9866 22 6 3.7453 -3.9164 -1.8352 23 6 2.1971 -1.1965 0.0005 24 6 1.4436 -2.5016 0.0017 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3634 -0.8903 -0.5134 28 1 1.6565 2.1325 -0.0004 29 1 4.1175 2.1383 -0.0010 30 1 6.1498 0.0147 -1.0141 31 1 6.1407 0.9017 0.5291 32 1 6.1460 -0.8784 0.5256 33 1 6.8998 -3.0436 -1.1555 34 1 6.0109 -4.2473 -0.1681 35 1 6.3385 -5.6321 -2.0211 36 1 6.5814 -4.2489 -3.1240 37 1 6.8911 -6.7187 -4.8345 38 1 2.9428 -3.4313 -2.3909 39 1 3.3338 -4.5285 -1.0326 40 1 1.1679 -2.7610 1.0239 41 1 0.5426 -2.4015 -0.6034 42 1 2.0755 -3.2863 -0.4144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225804245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:42 Heat of formation + Delta-G solvation = 2.186189 kcal Electronic energy + Delta-G solvation = -21771.332071 eV Core-core repulsion = 18716.953103 eV Total energy + Delta-G solvation = -3054.378968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23965 -37.97870 -36.04447 -34.17104 -32.32848 -31.15692 -29.41365 -29.04802 -27.71423 -26.32591 -24.79848 -24.36193 -21.89374 -20.50789 -20.12834 -19.92324 -17.34458 -16.95332 -16.20811 -15.27799 -14.96400 -14.62079 -14.26736 -14.08143 -13.59175 -13.34485 -13.08201 -13.03197 -12.75298 -12.68703 -12.55133 -12.26881 -12.00929 -11.82231 -11.72756 -11.51819 -11.26896 -11.02528 -10.92686 -10.79811 -10.64096 -10.27265 -10.13647 -9.82215 -9.72138 -9.27830 -8.60788 -8.39604 -8.25221 -6.85690 -5.72251 -3.06459 1.30599 1.39288 3.40644 3.44321 3.45842 3.51341 4.13855 4.50586 4.81151 4.85636 4.97567 5.13932 5.25081 5.34681 5.42543 5.45950 5.51180 5.54722 5.62093 5.67026 5.70480 5.72713 5.76094 5.82215 5.88381 5.94696 5.97648 6.18899 6.26310 6.44072 6.45079 6.48980 6.50026 6.58557 6.63631 6.65438 6.75602 6.99485 7.53544 7.58935 7.78476 7.96041 8.24070 9.20063 9.80097 10.45327 11.39375 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.004713 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.580671 B = 5939.816862 C = 6671.692927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.112 4.112 7 C 0.107 3.893 8 O -0.325 6.325 9 C 0.080 3.920 10 H 0.068 0.932 11 C -0.139 4.139 12 C 0.179 3.821 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.121 3.879 23 C -0.094 4.094 24 C -0.124 4.124 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.253 0.747 38 H 0.039 0.961 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 13.938 9.760 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.111 4.111 6 C -0.169 4.169 7 C 0.063 3.937 8 O -0.241 6.241 9 C 0.024 3.976 10 H 0.086 0.914 11 C -0.178 4.178 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.006 4.006 23 C -0.094 4.094 24 C -0.180 4.180 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.091 13.665 9.736 17.850 hybrid contribution -0.273 -0.336 -0.930 1.026 sum -6.363 13.329 8.806 17.196 Atomic orbital electron populations 1.20820 0.91245 1.02840 1.02158 1.19616 0.95928 0.92196 1.00806 1.20929 0.94079 0.97252 1.02179 1.20836 0.94008 0.96975 1.01405 1.20232 0.96726 0.92619 1.01536 1.20702 0.90837 1.02923 1.02406 1.18404 0.89478 0.85475 1.00297 1.85996 1.72112 1.35234 1.30805 1.23710 0.95761 0.95562 0.82545 0.91361 1.23053 0.94842 0.98455 1.01423 1.21180 0.86308 0.95874 0.91219 1.44355 1.02550 1.53992 1.32132 1.19012 0.92783 1.20589 1.03397 0.90435 1.24804 0.95511 1.00434 0.99545 1.69940 1.01122 1.45002 1.40917 0.86181 0.77430 0.79920 0.82123 1.21539 1.21114 1.21150 1.21983 0.93485 0.91799 0.93293 1.20032 0.92889 0.95676 1.00825 1.20954 1.00089 0.94805 1.02180 0.91315 0.91783 0.91051 0.86230 0.86060 0.91325 0.91802 0.90719 0.91726 0.91311 0.93446 0.93232 0.93634 0.94240 0.95226 0.91329 0.91518 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.60 36.01 0.35 -0.76 16 2 C -0.09 -1.08 5.88 -104.65 -0.62 -1.70 16 3 C -0.13 -1.49 9.70 -39.56 -0.38 -1.87 16 4 C -0.11 -1.40 9.70 -39.61 -0.38 -1.79 16 5 C -0.11 -1.57 5.89 -104.47 -0.62 -2.19 16 6 C -0.11 -1.40 9.59 36.00 0.35 -1.06 16 7 C 0.11 1.73 5.55 -39.22 -0.22 1.51 16 8 O -0.33 -5.74 8.11 -19.44 -0.16 -5.90 16 9 C 0.08 1.53 3.38 -24.58 -0.08 1.44 16 10 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 11 C -0.14 -2.71 6.68 -24.89 -0.17 -2.88 16 12 C 0.18 4.40 5.38 -3.06 -0.02 4.38 16 13 N -0.60 -15.70 3.39 -170.07 -0.58 -16.27 16 14 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 17 N -0.92 -27.11 10.31 55.49 0.57 -26.54 16 18 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 C 0.12 2.62 5.30 -2.53 -0.01 2.60 16 23 C -0.09 -1.39 5.89 -104.47 -0.62 -2.00 16 24 C -0.12 -1.72 9.33 36.01 0.34 -1.38 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.07 0.68 6.05 -51.92 -0.31 0.37 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.07 1.00 7.53 -51.93 -0.39 0.61 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.05 1.28 7.52 -51.93 -0.39 0.89 16 36 H 0.05 1.33 7.37 -51.93 -0.38 0.94 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.04 0.84 7.99 -51.93 -0.41 0.43 16 39 H 0.03 0.65 7.12 -51.93 -0.37 0.28 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.81 6.21 -51.93 -0.32 0.49 16 42 H 0.08 1.35 4.06 -51.93 -0.21 1.14 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -30.55 331.23 -9.08 -39.63 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.55 Total: -0.43 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.33 Total: -12.60 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.00 Total: -42.81 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.16 Total: -5.90 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.55 -9.08 -39.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225804245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.820 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds