Wall clock time and date at job start Mon Mar 30 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38286 * 119.96907 * 2 1 4 4 C 1.38244 * 120.10889 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.05862 * 359.67088 * 4 3 2 6 6 C 1.50699 * 120.03207 * 180.29856 * 5 4 3 7 7 C 1.38711 * 119.93913 * 0.58044 * 5 4 3 8 8 O 1.35904 * 120.05566 * 179.71617 * 7 5 4 9 9 C 1.42894 * 117.00199 * 276.51623 * 8 7 5 10 10 H 1.08995 * 110.89011 * 26.10238 * 9 8 7 11 11 C 1.55155 * 111.00531 * 150.03434 * 9 8 7 12 12 C 1.54334 * 103.02405 * 153.37888 * 11 9 8 13 13 N 1.47026 * 107.26301 * 338.13789 * 12 11 9 14 14 C 1.36933 * 125.64673 * 178.84615 * 13 12 11 15 15 H 1.07998 * 120.00093 * 179.69125 * 14 13 12 16 16 C 1.38813 * 119.99823 * 359.69667 * 14 13 12 17 17 N 1.31616 * 120.00272 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99553 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46859 * 180.02562 * 18 16 14 20 20 H 1.48497 * 109.47315 * 299.99522 * 18 16 14 21 21 H 1.48489 * 109.47479 * 60.00104 * 18 16 14 22 22 C 1.47424 * 108.70216 * 358.58777 * 13 12 11 23 23 C 1.38122 * 119.97535 * 179.97438 * 2 1 3 24 24 C 1.50702 * 120.02664 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46797 * 270.02137 * 1 2 3 26 26 H 1.08990 * 109.47349 * 30.02378 * 1 2 3 27 27 H 1.09008 * 109.47128 * 150.02762 * 1 2 3 28 28 H 1.07999 * 119.94811 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.97080 * 179.97438 * 4 3 2 30 30 H 1.08997 * 109.47485 * 270.27988 * 6 5 4 31 31 H 1.09004 * 109.46687 * 30.27801 * 6 5 4 32 32 H 1.09004 * 109.47198 * 150.28008 * 6 5 4 33 33 H 1.09004 * 110.71698 * 271.93841 * 11 9 8 34 34 H 1.09002 * 110.72254 * 35.03231 * 11 9 8 35 35 H 1.08996 * 109.99496 * 218.66203 * 12 11 9 36 36 H 1.09002 * 109.77828 * 97.49219 * 12 11 9 37 37 H 0.97004 * 119.99815 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.36447 * 143.19629 * 22 13 12 39 39 H 1.08999 * 110.36284 * 265.40423 * 22 13 12 40 40 H 1.09007 * 109.46912 * 276.09698 * 24 23 2 41 41 H 1.09000 * 109.47033 * 36.09186 * 24 23 2 42 42 H 1.08995 * 109.47180 * 156.09859 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2013 -0.0005 5 6 4.2752 0.0072 0.0058 6 6 5.7822 0.0116 0.0120 7 6 3.5846 -1.1958 0.0005 8 8 4.2658 -2.3717 0.0009 9 6 4.7212 -2.8581 -1.2632 10 1 4.8641 -2.0379 -1.9666 11 6 6.0223 -3.6882 -1.1038 12 6 5.9732 -4.6473 -2.3119 13 7 4.5691 -4.7406 -2.7381 14 6 4.1032 -5.4760 -3.7951 15 1 3.0479 -5.4828 -4.0248 16 6 4.9872 -6.2127 -4.5714 17 7 6.2733 -6.2041 -4.2918 18 14 4.3514 -7.2164 -6.0129 19 1 5.4875 -7.9066 -6.6748 20 1 3.3780 -8.2251 -5.5227 21 1 3.6834 -6.3162 -6.9866 22 6 3.7453 -3.9164 -1.8352 23 6 2.1971 -1.1965 0.0005 24 6 1.4436 -2.5016 0.0017 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3634 -0.8903 -0.5134 28 1 1.6565 2.1325 -0.0004 29 1 4.1175 2.1383 -0.0010 30 1 6.1498 0.0147 -1.0141 31 1 6.1407 0.9017 0.5291 32 1 6.1460 -0.8784 0.5256 33 1 6.8998 -3.0436 -1.1555 34 1 6.0109 -4.2473 -0.1681 35 1 6.3385 -5.6321 -2.0211 36 1 6.5814 -4.2489 -3.1240 37 1 6.8911 -6.7187 -4.8345 38 1 2.9428 -3.4313 -2.3909 39 1 3.3338 -4.5285 -1.0326 40 1 1.1679 -2.7610 1.0239 41 1 0.5426 -2.4015 -0.6034 42 1 2.0755 -3.2863 -0.4144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225804245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:41 Heat of formation + Delta-G solvation = -13.714694 kcal Electronic energy + Delta-G solvation = -21772.021585 eV Core-core repulsion = 18716.953103 eV Total energy + Delta-G solvation = -3055.068482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38845 -39.41881 -37.62090 -35.16591 -34.28871 -32.31275 -31.07960 -30.12784 -29.34357 -27.59773 -26.44540 -25.59056 -23.12071 -22.04929 -21.84230 -21.11244 -19.05688 -18.54361 -17.28844 -16.80795 -16.35781 -16.23443 -15.82245 -15.30331 -14.88672 -14.69612 -14.34589 -14.21655 -14.08107 -13.84457 -13.70601 -13.57230 -13.50469 -13.25963 -12.97420 -12.76457 -12.73019 -12.57750 -12.30942 -12.11145 -12.08519 -12.02372 -11.83504 -11.75232 -11.47215 -10.75288 -10.68639 -9.43713 -9.26968 -8.95973 -7.87610 -5.25043 0.24703 0.39728 1.45544 1.49225 1.55573 2.34529 2.51041 2.96439 3.31155 3.66157 3.77402 3.85148 3.90927 4.00308 4.07247 4.07923 4.25193 4.32364 4.46223 4.56524 4.64056 4.69302 4.72663 4.77335 4.80009 4.85164 4.85806 4.92222 4.96003 4.98534 5.04974 5.15133 5.25368 5.39676 5.45189 5.50950 5.58085 5.60615 5.68592 5.72013 5.95611 6.14545 6.67004 7.05773 7.71097 8.35664 9.22627 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.004713 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.580671 B = 5939.816862 C = 6671.692927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.121 4.121 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.111 4.111 7 C 0.068 3.932 8 O -0.327 6.327 9 C 0.101 3.899 10 H 0.065 0.935 11 C -0.125 4.125 12 C 0.187 3.813 13 N -0.624 5.624 14 C -0.249 4.249 15 H 0.082 0.918 16 C -0.061 4.061 17 N -0.950 5.950 18 Si 0.982 3.018 19 H -0.292 1.292 20 H -0.277 1.277 21 H -0.276 1.276 22 C 0.123 3.877 23 C -0.112 4.112 24 C -0.122 4.122 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.014 0.986 36 H 0.021 0.979 37 H 0.249 0.751 38 H 0.039 0.961 39 H 0.029 0.971 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 16.141 10.207 20.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.133 4.133 5 C -0.123 4.123 6 C -0.167 4.167 7 C 0.024 3.976 8 O -0.243 6.243 9 C 0.044 3.956 10 H 0.084 0.916 11 C -0.163 4.163 12 C 0.062 3.938 13 N -0.352 5.352 14 C -0.378 4.378 15 H 0.100 0.900 16 C -0.255 4.255 17 N -0.598 5.598 18 Si 0.809 3.191 19 H -0.218 1.218 20 H -0.203 1.203 21 H -0.202 1.202 22 C -0.002 4.002 23 C -0.112 4.112 24 C -0.178 4.178 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.545 15.891 10.210 20.339 hybrid contribution 0.084 -0.918 -1.003 1.362 sum -7.460 14.972 9.208 19.095 Atomic orbital electron populations 1.20877 0.89147 1.03674 1.03229 1.19999 0.97562 0.91746 0.99910 1.21372 0.94166 0.98210 1.00153 1.21213 0.94549 0.97319 1.00257 1.20490 0.97599 0.92721 1.01481 1.20715 0.90037 1.03518 1.02438 1.18753 0.90228 0.85346 1.03252 1.85993 1.72451 1.36536 1.29346 1.23275 0.94276 0.94595 0.83434 0.91649 1.22867 0.96398 0.97846 0.99169 1.20923 0.85427 0.95246 0.92184 1.44652 1.03684 1.54450 1.32388 1.19412 0.93227 1.20982 1.04171 0.90035 1.25677 0.95766 1.01719 1.02304 1.70159 1.02167 1.45685 1.41832 0.85115 0.76800 0.78388 0.78792 1.21751 1.20253 1.20169 1.22054 0.93667 0.91981 0.92516 1.20243 0.92708 0.96769 1.01504 1.20921 1.00091 0.93964 1.02821 0.90014 0.89955 0.91244 0.83045 0.83247 0.91509 0.89311 0.92043 0.89164 0.90617 0.96739 0.96111 0.94165 0.94269 0.95363 0.90435 0.90091 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.60 71.24 0.68 -1.16 16 2 C -0.09 -2.11 5.88 -19.88 -0.12 -2.22 16 3 C -0.12 -2.43 9.70 22.28 0.22 -2.22 16 4 C -0.12 -2.48 9.70 22.25 0.22 -2.26 16 5 C -0.12 -3.28 5.89 -19.77 -0.12 -3.39 16 6 C -0.11 -2.59 9.59 71.24 0.68 -1.91 16 7 C 0.07 2.12 5.55 22.51 0.12 2.25 16 8 O -0.33 -11.54 8.11 -92.47 -0.75 -12.29 16 9 C 0.10 3.87 3.38 31.99 0.11 3.97 16 10 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 11 C -0.12 -4.90 6.68 31.79 0.21 -4.69 16 12 C 0.19 9.57 5.38 86.73 0.47 10.03 16 13 N -0.62 -33.50 3.39 -691.97 -2.35 -35.84 16 14 C -0.25 -14.36 10.28 84.03 0.86 -13.50 16 15 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 16 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 17 N -0.95 -57.63 10.31 21.65 0.22 -57.40 16 18 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 C 0.12 5.46 5.30 86.86 0.46 5.92 16 23 C -0.11 -3.18 5.89 -19.77 -0.12 -3.30 16 24 C -0.12 -3.32 9.33 71.24 0.66 -2.65 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 27 H 0.07 1.16 6.05 -2.38 -0.01 1.15 16 28 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 32 H 0.06 1.59 7.53 -2.38 -0.02 1.57 16 33 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 34 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.01 0.82 7.52 -2.39 -0.02 0.80 16 36 H 0.02 1.16 7.37 -2.39 -0.02 1.14 16 37 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 38 H 0.04 1.71 7.99 -2.39 -0.02 1.69 16 39 H 0.03 1.28 7.12 -2.39 -0.02 1.26 16 40 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.08 1.90 6.21 -2.39 -0.01 1.88 16 42 H 0.06 1.90 4.06 -2.39 -0.01 1.89 16 Total: -1.00 -67.53 331.23 4.96 -62.56 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 1.00 Total: 13.06 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 4.82 Total: -18.20 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -2.13 Total: -93.25 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.75 Total: -12.29 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -67.53 4.96 -62.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225804245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.847 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds