Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38287 * 119.97293 * 2 1 4 4 C 1.38245 * 120.11351 * 179.97438 * 3 2 1 5 5 C 1.38171 * 120.05301 * 359.76986 * 4 3 2 6 6 C 1.50703 * 120.02665 * 180.25172 * 5 4 3 7 7 C 1.38713 * 119.94346 * 0.48641 * 5 4 3 8 8 O 1.35901 * 120.05189 * 179.76494 * 7 5 4 9 9 C 1.42898 * 116.99766 * 269.72062 * 8 7 5 10 10 H 1.08993 * 110.89222 * 333.88804 * 9 8 7 11 11 C 1.55159 * 111.00519 * 210.00104 * 9 8 7 12 12 C 1.54317 * 102.94305 * 206.38942 * 11 9 8 13 13 N 1.47016 * 107.27340 * 22.19881 * 12 11 9 14 14 C 1.36942 * 125.65288 * 181.02187 * 13 12 11 15 15 H 1.07997 * 120.00223 * 189.86021 * 14 13 12 16 16 C 1.38816 * 119.99484 * 9.86482 * 14 13 12 17 17 N 1.31621 * 119.99698 * 208.77250 * 16 14 13 18 18 Si 1.86802 * 120.00167 * 29.04717 * 16 14 13 19 19 H 1.48491 * 109.47398 * 275.03019 * 18 16 14 20 20 H 1.48507 * 109.46925 * 35.03216 * 18 16 14 21 21 H 1.48502 * 109.46776 * 155.02653 * 18 16 14 22 22 C 1.47425 * 108.70453 * 1.28067 * 13 12 11 23 23 C 1.38124 * 119.97289 * 179.97438 * 2 1 3 24 24 C 1.50700 * 120.02644 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.46890 * 270.01742 * 1 2 3 26 26 H 1.08998 * 109.47281 * 30.01996 * 1 2 3 27 27 H 1.09000 * 109.47094 * 150.02175 * 1 2 3 28 28 H 1.08005 * 119.94353 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.97296 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47070 * 270.23362 * 6 5 4 31 31 H 1.09002 * 109.46850 * 30.23536 * 6 5 4 32 32 H 1.09002 * 109.46757 * 150.23407 * 6 5 4 33 33 H 1.09003 * 110.71917 * 88.02706 * 11 9 8 34 34 H 1.09004 * 110.87229 * 324.82458 * 11 9 8 35 35 H 1.09000 * 109.88341 * 262.77490 * 12 11 9 36 36 H 1.09000 * 110.01115 * 141.68373 * 12 11 9 37 37 H 0.96994 * 119.99751 * 5.08830 * 17 16 14 38 38 H 1.09000 * 110.36411 * 94.48484 * 22 13 12 39 39 H 1.08996 * 110.37033 * 216.81256 * 22 13 12 40 40 H 1.08998 * 109.47454 * 270.01876 * 24 23 2 41 41 H 1.09001 * 109.47455 * 30.01924 * 24 23 2 42 42 H 1.09007 * 109.47308 * 150.02114 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0071 0.0059 6 6 5.7822 0.0115 0.0122 7 6 3.5845 -1.1959 0.0005 8 8 4.2658 -2.3718 0.0009 9 6 4.5909 -2.9336 -1.2722 10 1 3.8831 -2.6062 -2.0336 11 6 4.6511 -4.4822 -1.1977 12 6 5.6230 -4.8456 -2.3399 13 7 6.4426 -3.6556 -2.6110 14 6 7.4151 -3.5577 -3.5701 15 1 8.0705 -2.6996 -3.5890 16 6 7.5584 -4.5616 -4.5181 17 7 8.7380 -4.7994 -5.0515 18 14 6.0758 -5.5699 -5.0422 19 1 5.8788 -6.6923 -4.0902 20 1 4.8672 -4.7071 -5.0472 21 1 6.3029 -6.1117 -6.4061 22 6 6.0484 -2.5868 -1.6751 23 6 2.1970 -1.1965 0.0005 24 6 1.4435 -2.5016 0.0017 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6564 2.1325 0.0004 29 1 4.1175 2.1382 0.0010 30 1 6.1498 0.0146 -1.0140 31 1 6.1407 0.9015 0.5294 32 1 6.1459 -0.8785 0.5257 33 1 3.6670 -4.9154 -1.3763 34 1 5.0464 -4.8097 -0.2361 35 1 5.0604 -5.1195 -3.2324 36 1 6.2624 -5.6745 -2.0361 37 1 9.5203 -4.3247 -4.7300 38 1 6.6976 -2.5908 -0.7996 39 1 6.0839 -1.6166 -2.1705 40 1 1.2619 -2.8154 1.0296 41 1 0.4910 -2.3717 -0.5121 42 1 2.0325 -3.2618 -0.5115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225804246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = 6.582244 kcal Electronic energy + Delta-G solvation = -21863.302589 eV Core-core repulsion = 18809.114248 eV Total energy + Delta-G solvation = -3054.188341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35251 -38.21828 -36.31819 -34.28761 -32.53204 -31.30347 -29.57320 -29.43276 -28.02567 -26.78571 -24.75063 -23.91199 -21.91977 -20.92943 -20.35418 -20.13094 -17.52251 -17.32678 -16.38973 -15.57765 -15.42579 -14.94787 -14.37531 -13.92045 -13.60341 -13.45573 -13.23402 -13.14843 -13.03521 -12.93441 -12.76275 -12.68476 -12.29013 -12.00311 -11.88009 -11.63783 -11.35031 -11.24726 -11.16276 -10.95625 -10.86006 -10.55407 -10.15158 -9.63601 -9.44304 -9.16858 -8.51502 -8.45461 -8.33524 -7.09400 -6.37870 -3.18967 1.21608 1.30550 3.39875 3.43155 3.52304 3.70195 4.00803 4.62402 4.70844 4.76630 4.88283 4.98181 5.03788 5.12176 5.16090 5.33667 5.36364 5.38868 5.42027 5.47287 5.56993 5.57120 5.63136 5.72119 5.73931 5.79408 5.83799 5.91542 6.08649 6.09988 6.21242 6.32273 6.40761 6.45724 6.48397 6.52437 6.56770 6.64387 6.76435 6.88382 7.65842 7.83156 8.32789 9.00675 9.56491 10.22985 11.11393 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.004988 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.779095 B = 5612.415582 C = 6147.048922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.113 4.113 5 C -0.099 4.099 6 C -0.117 4.117 7 C 0.104 3.896 8 O -0.323 6.323 9 C 0.077 3.923 10 H 0.071 0.929 11 C -0.124 4.124 12 C 0.120 3.880 13 N -0.607 5.607 14 C -0.333 4.333 15 H 0.078 0.922 16 C -0.012 4.012 17 N -0.911 5.911 18 Si 1.052 2.948 19 H -0.292 1.292 20 H -0.294 1.294 21 H -0.298 1.298 22 C 0.121 3.879 23 C -0.102 4.102 24 C -0.113 4.113 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.028 0.972 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.037 0.963 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.789 9.364 11.993 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.131 4.131 5 C -0.100 4.100 6 C -0.173 4.173 7 C 0.060 3.940 8 O -0.240 6.240 9 C 0.020 3.980 10 H 0.089 0.911 11 C -0.162 4.162 12 C -0.005 4.005 13 N -0.335 5.335 14 C -0.459 4.459 15 H 0.096 0.904 16 C -0.213 4.213 17 N -0.551 5.551 18 Si 0.885 3.115 19 H -0.220 1.220 20 H -0.222 1.222 21 H -0.226 1.226 22 C -0.005 4.005 23 C -0.102 4.102 24 C -0.169 4.169 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.128 8.085 11.024 21.143 hybrid contribution 0.418 1.410 0.853 1.700 sum -15.710 9.495 11.877 21.863 Atomic orbital electron populations 1.20825 0.91243 1.02784 1.02193 1.19587 0.95883 0.92185 1.01052 1.20954 0.94101 0.97285 1.01815 1.20889 0.93993 0.97132 1.01109 1.20261 0.96942 0.92435 1.00320 1.20848 0.90550 1.02974 1.02942 1.18361 0.89216 0.85543 1.00895 1.85986 1.73967 1.34455 1.29582 1.23802 0.97457 0.93753 0.82939 0.91059 1.22699 0.99849 0.93457 1.00234 1.21628 0.92368 0.91872 0.94582 1.44718 1.42648 1.07504 1.38670 1.20022 1.08027 1.09238 1.08616 0.90388 1.25749 1.02120 0.97596 0.95823 1.70890 0.98086 1.39519 1.46563 0.83984 0.75900 0.75824 0.75776 1.22011 1.22173 1.22570 1.22154 0.91819 0.92779 0.93779 1.20027 0.92916 0.95649 1.01620 1.20756 0.99545 0.94186 1.02436 0.91283 0.91705 0.91155 0.86126 0.85867 0.90707 0.91853 0.90506 0.91046 0.90136 0.95425 0.93712 0.92537 0.94564 0.93600 0.91074 0.91410 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.60 36.00 0.35 -0.63 16 2 C -0.09 -1.02 5.88 -104.65 -0.62 -1.63 16 3 C -0.12 -1.39 9.70 -39.56 -0.38 -1.78 16 4 C -0.11 -1.38 9.70 -39.60 -0.38 -1.76 16 5 C -0.10 -1.41 5.89 -104.47 -0.62 -2.03 16 6 C -0.12 -1.59 8.58 36.01 0.31 -1.28 16 7 C 0.10 1.59 5.54 -39.22 -0.22 1.37 16 8 O -0.32 -5.39 8.14 -19.43 -0.16 -5.55 16 9 C 0.08 1.38 2.91 -24.46 -0.07 1.31 16 10 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 11 C -0.12 -2.19 6.68 -24.90 -0.17 -2.36 16 12 C 0.12 2.68 5.00 -3.07 -0.02 2.67 16 13 N -0.61 -15.24 3.28 -169.94 -0.56 -15.80 16 14 C -0.33 -9.63 10.41 -15.06 -0.16 -9.79 16 15 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 16 C -0.01 -0.34 5.41 -17.43 -0.09 -0.44 16 17 N -0.91 -28.54 13.70 55.49 0.76 -27.78 16 18 Si 1.05 26.80 24.74 -169.99 -4.21 22.60 16 19 H -0.29 -6.98 6.76 56.52 0.38 -6.60 16 20 H -0.29 -7.20 6.86 56.52 0.39 -6.81 16 21 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 22 C 0.12 2.53 5.50 -2.41 -0.01 2.52 16 23 C -0.10 -1.37 5.89 -104.47 -0.62 -1.99 16 24 C -0.11 -1.30 9.38 36.01 0.34 -0.97 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.07 0.57 5.95 -51.93 -0.31 0.26 16 28 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.07 1.08 6.70 -51.93 -0.35 0.73 16 31 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.08 1.13 6.84 -51.93 -0.36 0.77 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.03 0.65 3.71 -51.93 -0.19 0.46 16 36 H 0.04 1.03 8.01 -51.93 -0.42 0.62 16 37 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 38 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 39 H 0.05 0.96 6.82 -51.93 -0.35 0.61 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.65 5.95 -51.93 -0.31 0.34 16 42 H 0.07 0.88 6.91 -51.93 -0.36 0.52 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -31.91 324.73 -8.06 -39.97 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.43 Total: -1.55 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.36 Total: -16.78 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: 0.20 Total: -43.58 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.16 Total: -5.55 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.21 Total: 22.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.91 -8.06 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225804246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.553 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds