Wall clock time and date at job start Mon Mar 30 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38287 * 119.97293 * 2 1 4 4 C 1.38245 * 120.11351 * 179.97438 * 3 2 1 5 5 C 1.38171 * 120.05301 * 359.76986 * 4 3 2 6 6 C 1.50703 * 120.02665 * 180.25172 * 5 4 3 7 7 C 1.38713 * 119.94346 * 0.48641 * 5 4 3 8 8 O 1.35901 * 120.05189 * 179.76494 * 7 5 4 9 9 C 1.42898 * 116.99766 * 269.72062 * 8 7 5 10 10 H 1.08993 * 110.89222 * 333.88804 * 9 8 7 11 11 C 1.55159 * 111.00519 * 210.00104 * 9 8 7 12 12 C 1.54317 * 102.94305 * 206.38942 * 11 9 8 13 13 N 1.47016 * 107.27340 * 22.19881 * 12 11 9 14 14 C 1.36942 * 125.65288 * 181.02187 * 13 12 11 15 15 H 1.07997 * 120.00223 * 189.86021 * 14 13 12 16 16 C 1.38816 * 119.99484 * 9.86482 * 14 13 12 17 17 N 1.31621 * 119.99698 * 208.77250 * 16 14 13 18 18 Si 1.86802 * 120.00167 * 29.04717 * 16 14 13 19 19 H 1.48491 * 109.47398 * 275.03019 * 18 16 14 20 20 H 1.48507 * 109.46925 * 35.03216 * 18 16 14 21 21 H 1.48502 * 109.46776 * 155.02653 * 18 16 14 22 22 C 1.47425 * 108.70453 * 1.28067 * 13 12 11 23 23 C 1.38124 * 119.97289 * 179.97438 * 2 1 3 24 24 C 1.50700 * 120.02644 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.46890 * 270.01742 * 1 2 3 26 26 H 1.08998 * 109.47281 * 30.01996 * 1 2 3 27 27 H 1.09000 * 109.47094 * 150.02175 * 1 2 3 28 28 H 1.08005 * 119.94353 * 0.02562 * 3 2 1 29 29 H 1.07996 * 119.97296 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47070 * 270.23362 * 6 5 4 31 31 H 1.09002 * 109.46850 * 30.23536 * 6 5 4 32 32 H 1.09002 * 109.46757 * 150.23407 * 6 5 4 33 33 H 1.09003 * 110.71917 * 88.02706 * 11 9 8 34 34 H 1.09004 * 110.87229 * 324.82458 * 11 9 8 35 35 H 1.09000 * 109.88341 * 262.77490 * 12 11 9 36 36 H 1.09000 * 110.01115 * 141.68373 * 12 11 9 37 37 H 0.96994 * 119.99751 * 5.08830 * 17 16 14 38 38 H 1.09000 * 110.36411 * 94.48484 * 22 13 12 39 39 H 1.08996 * 110.37033 * 216.81256 * 22 13 12 40 40 H 1.08998 * 109.47454 * 270.01876 * 24 23 2 41 41 H 1.09001 * 109.47455 * 30.01924 * 24 23 2 42 42 H 1.09007 * 109.47308 * 150.02114 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0071 0.0059 6 6 5.7822 0.0115 0.0122 7 6 3.5845 -1.1959 0.0005 8 8 4.2658 -2.3718 0.0009 9 6 4.5909 -2.9336 -1.2722 10 1 3.8831 -2.6062 -2.0336 11 6 4.6511 -4.4822 -1.1977 12 6 5.6230 -4.8456 -2.3399 13 7 6.4426 -3.6556 -2.6110 14 6 7.4151 -3.5577 -3.5701 15 1 8.0705 -2.6996 -3.5890 16 6 7.5584 -4.5616 -4.5181 17 7 8.7380 -4.7994 -5.0515 18 14 6.0758 -5.5699 -5.0422 19 1 5.8788 -6.6923 -4.0902 20 1 4.8672 -4.7071 -5.0472 21 1 6.3029 -6.1117 -6.4061 22 6 6.0484 -2.5868 -1.6751 23 6 2.1970 -1.1965 0.0005 24 6 1.4435 -2.5016 0.0017 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6564 2.1325 0.0004 29 1 4.1175 2.1382 0.0010 30 1 6.1498 0.0146 -1.0140 31 1 6.1407 0.9015 0.5294 32 1 6.1459 -0.8785 0.5257 33 1 3.6670 -4.9154 -1.3763 34 1 5.0464 -4.8097 -0.2361 35 1 5.0604 -5.1195 -3.2324 36 1 6.2624 -5.6745 -2.0361 37 1 9.5203 -4.3247 -4.7300 38 1 6.6976 -2.5908 -0.7996 39 1 6.0839 -1.6166 -2.1705 40 1 1.2619 -2.8154 1.0296 41 1 0.4910 -2.3717 -0.5121 42 1 2.0325 -3.2618 -0.5115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225804246.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:45 Heat of formation + Delta-G solvation = -12.150538 kcal Electronic energy + Delta-G solvation = -21864.114903 eV Core-core repulsion = 18809.114248 eV Total energy + Delta-G solvation = -3055.000655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44431 -39.60238 -37.77800 -35.23113 -34.61265 -32.38314 -31.31655 -30.44591 -29.50548 -27.83502 -25.84595 -25.63489 -23.05926 -22.62803 -21.80212 -21.26607 -19.61986 -18.55780 -17.51411 -17.21068 -16.61405 -16.16617 -15.81439 -15.34610 -15.24298 -14.74692 -14.55732 -14.45170 -14.22137 -14.08932 -13.80838 -13.65960 -13.53851 -13.29157 -13.11456 -13.09884 -12.78218 -12.58545 -12.40699 -12.24802 -12.07265 -11.88119 -11.80855 -11.54015 -11.22332 -10.75503 -10.62983 -9.48684 -9.31374 -9.18904 -8.73071 -5.46355 0.20246 0.36213 1.38889 1.50053 1.70226 2.30482 2.51643 2.87141 2.97195 3.41626 3.61254 3.75531 3.81761 3.89125 3.95319 4.04484 4.17653 4.21531 4.28891 4.40377 4.53395 4.60276 4.64494 4.71713 4.73881 4.77488 4.82203 4.82749 4.85541 4.93370 4.95056 5.00156 5.11302 5.13827 5.20442 5.41686 5.47543 5.51516 5.57334 5.68215 5.91593 6.05552 6.60506 6.76187 7.40461 8.06155 8.77823 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.004988 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.779095 B = 5612.415582 C = 6147.048922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.112 4.112 7 C 0.067 3.933 8 O -0.324 6.324 9 C 0.094 3.906 10 H 0.071 0.929 11 C -0.112 4.112 12 C 0.110 3.890 13 N -0.628 5.628 14 C -0.329 4.329 15 H 0.045 0.955 16 C -0.065 4.065 17 N -0.944 5.944 18 Si 1.097 2.903 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.302 1.302 22 C 0.121 3.879 23 C -0.112 4.112 24 C -0.112 4.112 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.251 0.749 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.569 9.837 13.191 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.168 4.168 7 C 0.024 3.976 8 O -0.240 6.240 9 C 0.037 3.963 10 H 0.089 0.911 11 C -0.149 4.149 12 C -0.014 4.014 13 N -0.356 5.356 14 C -0.457 4.457 15 H 0.063 0.937 16 C -0.260 4.260 17 N -0.586 5.586 18 Si 0.923 3.077 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.231 1.231 22 C -0.005 4.005 23 C -0.112 4.112 24 C -0.169 4.169 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.169 0.831 29 H 0.161 0.839 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.932 8.578 12.271 24.929 hybrid contribution 1.615 1.458 0.578 2.251 sum -18.317 10.035 12.848 24.522 Atomic orbital electron populations 1.20894 0.88769 1.03877 1.03342 1.20025 0.97719 0.91647 0.99675 1.21378 0.93853 0.98563 1.00011 1.21186 0.94800 0.97142 1.00491 1.20430 0.96973 0.93224 1.01417 1.20768 0.90960 1.03185 1.01900 1.18692 0.90258 0.85142 1.03492 1.85991 1.74350 1.35349 1.28310 1.23416 0.94781 0.94146 0.83912 0.91142 1.22664 1.00404 0.93030 0.98834 1.21810 0.92703 0.90532 0.96352 1.44772 1.42619 1.10036 1.38215 1.19904 1.08359 1.07930 1.09535 0.93694 1.26994 1.03616 0.99276 0.96114 1.70994 0.98526 1.40963 1.48153 0.83407 0.73051 0.75625 0.75577 1.19119 1.20370 1.23065 1.22199 0.94332 0.91398 0.92550 1.20311 0.92312 0.97290 1.01333 1.20803 1.00020 0.92919 1.03115 0.89960 0.90180 0.90561 0.83121 0.83851 0.92360 0.89689 0.92243 0.87445 0.89047 0.95344 0.94702 0.93991 0.95019 0.94496 0.90219 0.89373 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.60 71.23 0.68 -0.78 16 2 C -0.09 -1.83 5.88 -19.88 -0.12 -1.95 16 3 C -0.12 -2.32 9.70 22.28 0.22 -2.10 16 4 C -0.12 -2.63 9.70 22.26 0.22 -2.42 16 5 C -0.12 -3.33 5.89 -19.77 -0.12 -3.45 16 6 C -0.11 -3.08 8.58 71.24 0.61 -2.47 16 7 C 0.07 1.99 5.54 22.51 0.12 2.12 16 8 O -0.32 -10.49 8.14 -92.43 -0.75 -11.24 16 9 C 0.09 3.28 2.91 32.07 0.09 3.38 16 10 H 0.07 2.47 7.93 -2.39 -0.02 2.46 16 11 C -0.11 -3.67 6.68 31.78 0.21 -3.45 16 12 C 0.11 4.77 5.00 86.73 0.43 5.20 16 13 N -0.63 -31.89 3.28 -691.56 -2.27 -34.16 16 14 C -0.33 -19.74 10.41 84.03 0.87 -18.86 16 15 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 16 C -0.06 -3.92 5.41 84.86 0.46 -3.46 16 17 N -0.94 -61.15 13.70 21.65 0.30 -60.85 16 18 Si 1.10 53.96 24.74 68.60 1.70 55.66 16 19 H -0.27 -11.82 6.76 99.48 0.67 -11.14 16 20 H -0.28 -12.75 6.86 99.48 0.68 -12.07 16 21 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 22 C 0.12 5.15 5.50 86.93 0.48 5.62 16 23 C -0.11 -2.76 5.89 -19.77 -0.12 -2.88 16 24 C -0.11 -2.27 9.38 71.24 0.67 -1.60 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 27 H 0.08 0.92 5.95 -2.39 -0.01 0.90 16 28 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.06 1.76 6.70 -2.38 -0.02 1.74 16 31 H 0.08 1.88 8.09 -2.39 -0.02 1.86 16 32 H 0.06 1.80 6.84 -2.39 -0.02 1.79 16 33 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 35 H 0.03 1.26 3.71 -2.39 -0.01 1.25 16 36 H 0.03 1.57 8.01 -2.39 -0.02 1.55 16 37 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 38 H 0.03 1.38 7.60 -2.39 -0.02 1.36 16 39 H 0.04 1.61 6.82 -2.39 -0.02 1.60 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.38 5.95 -2.39 -0.01 1.36 16 42 H 0.06 1.31 6.91 -2.38 -0.02 1.29 16 Total: -1.00 -71.16 324.73 4.60 -66.56 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.91 Total: 11.14 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 4.72 Total: -27.10 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -1.97 Total: -95.01 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.75 Total: -11.24 kcal Atomic # 14 Polarization: 53.96 SS G_CDS: 1.70 Total: 55.66 kcal Total: -71.16 4.60 -66.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225804246.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.411 kcal (2) G-P(sol) polarization free energy of solvation -71.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds