Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38271 * 119.94047 * 2 1 4 4 C 1.38144 * 120.05369 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.02786 * 180.02562 * 4 3 2 6 6 C 1.38737 * 119.94632 * 359.97438 * 4 3 2 7 7 O 1.35900 * 120.05554 * 180.02562 * 6 4 3 8 8 C 1.42902 * 116.99718 * 95.55173 * 7 6 4 9 9 C 1.53515 * 114.17242 * 141.84643 * 8 7 6 10 10 N 1.47483 * 87.93116 * 87.80967 * 9 8 7 11 11 C 1.46899 * 110.99512 * 138.70819 * 10 9 8 12 12 C 1.50704 * 109.46696 * 169.99737 * 11 10 9 13 13 H 1.07991 * 120.00311 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99541 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99632 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00116 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47225 * 269.99417 * 16 14 12 18 18 H 1.48497 * 109.47403 * 29.99907 * 16 14 12 19 19 H 1.48504 * 109.47030 * 149.99371 * 16 14 12 20 20 C 1.47478 * 87.83795 * 27.01394 * 10 9 8 21 21 C 1.38729 * 119.88713 * 0.27767 * 6 4 3 22 22 C 1.50701 * 120.02625 * 179.72404 * 21 6 4 23 23 C 1.38145 * 119.94204 * 359.42262 * 21 6 4 24 24 H 1.09002 * 109.47340 * 90.00015 * 1 2 3 25 25 H 1.09000 * 109.46918 * 209.99858 * 1 2 3 26 26 H 1.08994 * 109.47407 * 329.99648 * 1 2 3 27 27 H 1.07992 * 119.97477 * 0.02562 * 3 2 1 28 28 H 1.09006 * 109.46836 * 264.49503 * 5 4 3 29 29 H 1.08999 * 109.46807 * 24.49488 * 5 4 3 30 30 H 1.08996 * 109.47282 * 144.49293 * 5 4 3 31 31 H 1.09000 * 113.25722 * 8.89224 * 8 7 6 32 32 H 1.09002 * 113.46909 * 333.04573 * 9 8 7 33 33 H 1.08996 * 113.47707 * 202.57588 * 9 8 7 34 34 H 1.09000 * 109.47429 * 49.99827 * 11 10 9 35 35 H 1.09004 * 109.46786 * 289.99580 * 11 10 9 36 36 H 0.96996 * 119.99660 * 180.02562 * 15 14 12 37 37 H 1.08998 * 113.47977 * 87.75132 * 20 10 9 38 38 H 1.09006 * 113.47293 * 218.22689 * 20 10 9 39 39 H 1.08997 * 109.47064 * 90.00183 * 22 21 6 40 40 H 1.09000 * 109.46863 * 209.99688 * 22 21 6 41 41 H 1.08992 * 109.47298 * 329.99403 * 22 21 6 42 42 H 1.08006 * 119.97316 * 180.31873 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.3301 2.5072 0.0000 6 6 4.2735 0.0001 -0.0005 7 8 5.6325 0.0002 -0.0005 8 6 6.2812 -0.1229 1.2668 9 6 7.5479 -0.9898 1.2430 10 7 8.3074 0.2240 0.8896 11 6 9.5826 0.2774 1.6170 12 6 10.4343 1.3873 1.0568 13 1 10.0651 1.9927 0.2423 14 6 11.6845 1.6304 1.5849 15 7 12.4276 2.5994 1.0963 16 14 12.3228 0.5837 2.9942 17 1 11.9300 1.2007 4.2865 18 1 11.7427 -0.7800 2.9002 19 1 13.8033 0.4982 2.9163 20 6 7.2694 1.0082 1.5844 21 6 3.5787 -1.2006 -0.0058 22 6 4.3304 -2.5068 -0.0121 23 6 2.1973 -1.1980 0.0010 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6557 2.1326 0.0004 28 1 4.5964 2.7736 -1.0229 29 1 3.7009 3.2882 0.4269 30 1 5.2366 2.4045 0.5965 31 1 5.5950 -0.3576 2.0805 32 1 7.5433 -1.7437 0.4557 33 1 7.8124 -1.3990 2.2180 34 1 10.1046 -0.6729 1.5053 35 1 9.3906 0.4646 2.6735 36 1 13.3073 2.7702 1.4676 37 1 7.4596 1.1320 2.6505 38 1 7.0288 1.9475 1.0864 39 1 4.5120 -2.8264 1.0140 40 1 3.7400 -3.2632 -0.5292 41 1 5.2827 -2.3754 -0.5258 42 1 1.6559 -2.1326 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228407410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = 19.069443 kcal Electronic energy + Delta-G solvation = -21180.320003 eV Core-core repulsion = 18126.673147 eV Total energy + Delta-G solvation = -3053.646855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51901 -39.20325 -36.68562 -33.62530 -32.92614 -32.51448 -29.78094 -28.03395 -26.80966 -26.36221 -25.48009 -25.12125 -21.43725 -20.98887 -20.89939 -19.48560 -17.58736 -16.77324 -16.43817 -15.62453 -15.17074 -14.54201 -14.27069 -14.23100 -14.03408 -13.52379 -13.35255 -13.14990 -13.07976 -12.93608 -12.89206 -12.61798 -12.42402 -12.41595 -12.04450 -11.66520 -11.53152 -11.29075 -11.17229 -10.98956 -10.75082 -10.47865 -9.98943 -9.77646 -9.41867 -9.33786 -8.64945 -8.57358 -8.32634 -7.94702 -6.04052 -4.01212 1.12363 1.27238 3.26267 3.30959 3.34471 3.35429 3.89431 4.41365 4.63281 4.67074 4.71724 4.75679 4.83463 5.13772 5.15723 5.16477 5.26211 5.35292 5.38375 5.39002 5.55930 5.56758 5.64299 5.68391 5.75720 5.78821 5.79855 5.81171 6.02739 6.05651 6.11972 6.24145 6.28600 6.37962 6.44389 6.51351 6.59948 6.68634 6.81741 7.33111 7.69305 7.76866 7.87130 8.64949 9.07825 9.57057 11.09471 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.003722 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.411606 B = 7521.599050 C = 8031.894279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.087 4.087 5 C -0.115 4.115 6 C 0.090 3.910 7 O -0.292 6.292 8 C 0.064 3.936 9 C -0.013 4.013 10 N -0.442 5.442 11 C 0.125 3.875 12 C -0.504 4.504 13 H 0.081 0.919 14 C 0.067 3.933 15 N -0.900 5.900 16 Si 0.875 3.125 17 H -0.277 1.277 18 H -0.268 1.268 19 H -0.285 1.285 20 C -0.006 4.006 21 C -0.097 4.097 22 C -0.114 4.114 23 C -0.119 4.119 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.028 0.972 35 H -0.005 1.005 36 H 0.263 0.737 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.486 -7.292 0.910 24.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.087 4.087 5 C -0.172 4.172 6 C 0.046 3.954 7 O -0.208 6.208 8 C 0.007 3.993 9 C -0.143 4.143 10 N -0.164 5.164 11 C -0.002 4.002 12 C -0.543 4.543 13 H 0.099 0.901 14 C -0.135 4.135 15 N -0.539 5.539 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.193 1.193 19 H -0.211 1.211 20 C -0.135 4.135 21 C -0.097 4.097 22 C -0.170 4.170 23 C -0.137 4.137 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.943 -7.040 0.084 23.998 hybrid contribution 0.384 -0.646 1.812 1.962 sum -22.559 -7.686 1.895 23.908 Atomic orbital electron populations 1.20756 0.91229 1.02600 1.02206 1.19869 0.95968 0.93059 1.00183 1.20788 0.92840 0.97612 1.02398 1.20241 0.93783 0.95392 0.99332 1.20791 1.00306 0.92855 1.03200 1.18483 0.83587 0.91375 1.01977 1.86122 1.14131 1.92530 1.28013 1.23494 0.92718 0.98582 0.84482 1.24188 0.92554 0.96827 1.00728 1.69023 1.01256 1.01898 1.44205 1.20769 0.89072 0.98541 0.91856 1.20967 0.99597 1.14698 1.19009 0.90115 1.24935 0.96650 0.95105 0.96785 1.69899 1.11007 1.30754 1.42273 0.86865 0.78380 0.81447 0.83076 1.20330 1.19282 1.21063 1.24298 0.92074 0.98695 0.98421 1.20249 0.93939 0.95295 1.00227 1.20729 1.00762 0.93229 1.02326 1.20749 0.92853 0.97553 1.02590 0.91267 0.91694 0.91634 0.85892 0.90707 0.91876 0.90500 0.90891 0.89672 0.91141 0.95426 0.98737 0.92672 0.90891 0.89478 0.91370 0.91652 0.90428 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 2 C -0.09 -0.93 5.88 -104.60 -0.62 -1.55 16 3 C -0.12 -1.32 9.33 -39.60 -0.37 -1.69 16 4 C -0.09 -1.14 5.89 -104.47 -0.62 -1.76 16 5 C -0.12 -1.44 9.73 36.01 0.35 -1.09 16 6 C 0.09 1.29 5.54 -39.22 -0.22 1.07 16 7 O -0.29 -4.80 8.38 -19.43 -0.16 -4.97 16 8 C 0.06 1.00 4.37 -26.19 -0.11 0.88 16 9 C -0.01 -0.23 7.52 -7.54 -0.06 -0.29 16 10 N -0.44 -9.61 6.32 -246.08 -1.55 -11.17 16 11 C 0.12 3.08 3.64 -4.97 -0.02 3.06 16 12 C -0.50 -14.82 9.94 -34.44 -0.34 -15.16 16 13 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -28.09 13.96 55.43 0.77 -27.31 16 16 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 C -0.01 -0.10 7.27 -7.54 -0.05 -0.16 16 21 C -0.10 -1.21 5.89 -104.47 -0.62 -1.82 16 22 C -0.11 -1.24 9.65 36.01 0.35 -0.89 16 23 C -0.12 -1.28 9.35 -39.61 -0.37 -1.65 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 26 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 30 H 0.08 1.07 5.48 -51.93 -0.28 0.78 16 31 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 34 H 0.03 0.69 7.14 -51.93 -0.37 0.32 16 35 H -0.01 -0.12 6.73 -51.93 -0.35 -0.47 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.07 1.28 7.42 -51.93 -0.39 0.89 16 38 H 0.09 1.63 6.49 -51.93 -0.34 1.30 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 41 H 0.08 0.95 7.53 -51.93 -0.39 0.56 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -32.53 340.33 -9.66 -42.18 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.74 Total: -1.23 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.43 Total: -19.60 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.78 Total: -38.48 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.16 Total: -4.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.53 -9.66 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228407410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.253 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds