Wall clock time and date at job start Mon Mar 30 2020 02:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38271 * 119.94047 * 2 1 4 4 C 1.38144 * 120.05369 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.02786 * 180.02562 * 4 3 2 6 6 C 1.38737 * 119.94632 * 359.97438 * 4 3 2 7 7 O 1.35900 * 120.05554 * 180.02562 * 6 4 3 8 8 C 1.42902 * 116.99718 * 95.55173 * 7 6 4 9 9 C 1.53515 * 114.17242 * 141.84643 * 8 7 6 10 10 N 1.47483 * 87.93116 * 87.80967 * 9 8 7 11 11 C 1.46899 * 110.99512 * 138.70819 * 10 9 8 12 12 C 1.50704 * 109.46696 * 169.99737 * 11 10 9 13 13 H 1.07991 * 120.00311 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99541 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99632 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00116 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47225 * 269.99417 * 16 14 12 18 18 H 1.48497 * 109.47403 * 29.99907 * 16 14 12 19 19 H 1.48504 * 109.47030 * 149.99371 * 16 14 12 20 20 C 1.47478 * 87.83795 * 27.01394 * 10 9 8 21 21 C 1.38729 * 119.88713 * 0.27767 * 6 4 3 22 22 C 1.50701 * 120.02625 * 179.72404 * 21 6 4 23 23 C 1.38145 * 119.94204 * 359.42262 * 21 6 4 24 24 H 1.09002 * 109.47340 * 90.00015 * 1 2 3 25 25 H 1.09000 * 109.46918 * 209.99858 * 1 2 3 26 26 H 1.08994 * 109.47407 * 329.99648 * 1 2 3 27 27 H 1.07992 * 119.97477 * 0.02562 * 3 2 1 28 28 H 1.09006 * 109.46836 * 264.49503 * 5 4 3 29 29 H 1.08999 * 109.46807 * 24.49488 * 5 4 3 30 30 H 1.08996 * 109.47282 * 144.49293 * 5 4 3 31 31 H 1.09000 * 113.25722 * 8.89224 * 8 7 6 32 32 H 1.09002 * 113.46909 * 333.04573 * 9 8 7 33 33 H 1.08996 * 113.47707 * 202.57588 * 9 8 7 34 34 H 1.09000 * 109.47429 * 49.99827 * 11 10 9 35 35 H 1.09004 * 109.46786 * 289.99580 * 11 10 9 36 36 H 0.96996 * 119.99660 * 180.02562 * 15 14 12 37 37 H 1.08998 * 113.47977 * 87.75132 * 20 10 9 38 38 H 1.09006 * 113.47293 * 218.22689 * 20 10 9 39 39 H 1.08997 * 109.47064 * 90.00183 * 22 21 6 40 40 H 1.09000 * 109.46863 * 209.99688 * 22 21 6 41 41 H 1.08992 * 109.47298 * 329.99403 * 22 21 6 42 42 H 1.08006 * 119.97316 * 180.31873 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5785 1.2009 -0.0005 5 6 4.3301 2.5072 0.0000 6 6 4.2735 0.0001 -0.0005 7 8 5.6325 0.0002 -0.0005 8 6 6.2812 -0.1229 1.2668 9 6 7.5479 -0.9898 1.2430 10 7 8.3074 0.2240 0.8896 11 6 9.5826 0.2774 1.6170 12 6 10.4343 1.3873 1.0568 13 1 10.0651 1.9927 0.2423 14 6 11.6845 1.6304 1.5849 15 7 12.4276 2.5994 1.0963 16 14 12.3228 0.5837 2.9942 17 1 11.9300 1.2007 4.2865 18 1 11.7427 -0.7800 2.9002 19 1 13.8033 0.4982 2.9163 20 6 7.2694 1.0082 1.5844 21 6 3.5787 -1.2006 -0.0058 22 6 4.3304 -2.5068 -0.0121 23 6 2.1973 -1.1980 0.0010 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6557 2.1326 0.0004 28 1 4.5964 2.7736 -1.0229 29 1 3.7009 3.2882 0.4269 30 1 5.2366 2.4045 0.5965 31 1 5.5950 -0.3576 2.0805 32 1 7.5433 -1.7437 0.4557 33 1 7.8124 -1.3990 2.2180 34 1 10.1046 -0.6729 1.5053 35 1 9.3906 0.4646 2.6735 36 1 13.3073 2.7702 1.4676 37 1 7.4596 1.1320 2.6505 38 1 7.0288 1.9475 1.0864 39 1 4.5120 -2.8264 1.0140 40 1 3.7400 -3.2632 -0.5292 41 1 5.2827 -2.3754 -0.5258 42 1 1.6559 -2.1326 0.0021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228407410.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:21 Heat of formation + Delta-G solvation = -2.373104 kcal Electronic energy + Delta-G solvation = -21181.249821 eV Core-core repulsion = 18126.673147 eV Total energy + Delta-G solvation = -3054.576674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66765 -40.40799 -37.84267 -34.96594 -34.51792 -33.52715 -31.63170 -28.84886 -27.72376 -27.67147 -26.83426 -26.52588 -23.28455 -21.93875 -21.88209 -20.71818 -18.98699 -18.70868 -17.40687 -17.12151 -16.58068 -15.98566 -15.61149 -15.34929 -15.19888 -14.72886 -14.54368 -14.36194 -14.12923 -14.04161 -13.91374 -13.84170 -13.52229 -13.49430 -13.21462 -13.10315 -12.86411 -12.49553 -12.28033 -12.17041 -11.91699 -11.87369 -11.74804 -11.53642 -11.48677 -10.81619 -10.63913 -9.58562 -9.51956 -9.23481 -8.31100 -6.35857 0.21184 0.39623 1.31970 1.35446 1.46236 2.32117 2.32947 2.85889 3.01050 3.36566 3.41520 3.83506 3.86740 3.88295 3.95959 4.27969 4.36655 4.39675 4.43799 4.51112 4.56198 4.57796 4.64178 4.68828 4.73127 4.74969 4.76557 4.81708 4.88241 4.88906 4.94337 5.02652 5.13564 5.32252 5.36832 5.46904 5.49400 5.62724 5.68116 5.71781 5.93275 5.98997 6.55741 6.70180 6.70769 7.27472 8.86525 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035327 B = 0.003722 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.411606 B = 7521.599050 C = 8031.894279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.103 4.103 5 C -0.113 4.113 6 C 0.055 3.945 7 O -0.313 6.313 8 C 0.086 3.914 9 C -0.008 4.008 10 N -0.483 5.483 11 C 0.137 3.863 12 C -0.520 4.520 13 H 0.025 0.975 14 C 0.003 3.997 15 N -0.951 5.951 16 Si 0.955 3.045 17 H -0.262 1.262 18 H -0.246 1.246 19 H -0.281 1.281 20 C -0.011 4.011 21 C -0.104 4.104 22 C -0.111 4.111 23 C -0.121 4.121 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.143 0.857 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.009 0.991 36 H 0.268 0.732 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.002 -9.573 2.772 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.104 4.104 5 C -0.170 4.170 6 C 0.012 3.988 7 O -0.229 6.229 8 C 0.030 3.970 9 C -0.137 4.137 10 N -0.206 5.206 11 C 0.009 3.991 12 C -0.559 4.559 13 H 0.044 0.956 14 C -0.194 4.194 15 N -0.591 5.591 16 Si 0.778 3.222 17 H -0.187 1.187 18 H -0.170 1.170 19 H -0.206 1.206 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.168 4.168 23 C -0.139 4.139 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.161 0.839 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.493 -9.327 1.934 27.215 hybrid contribution 1.034 0.145 1.098 1.515 sum -24.460 -9.182 3.032 26.302 Atomic orbital electron populations 1.20825 0.88731 1.03878 1.03201 1.20296 0.97781 0.92498 0.98148 1.21059 0.92049 0.99100 1.01924 1.20381 0.94836 0.94973 1.00183 1.20753 0.99956 0.93884 1.02375 1.18779 0.82697 0.92718 1.04610 1.86104 1.15840 1.92585 1.28406 1.23263 0.92520 0.95916 0.85326 1.24256 0.92093 0.95444 1.01941 1.68921 1.01098 1.05356 1.45186 1.20532 0.89958 0.96289 0.92333 1.21219 1.00930 1.15769 1.17955 0.95625 1.25993 0.96662 0.96547 1.00169 1.70076 1.11700 1.32963 1.44409 0.85596 0.77649 0.80120 0.78856 1.18706 1.16995 1.20612 1.24374 0.92339 0.98841 0.98499 1.20466 0.94870 0.95113 1.00013 1.20734 0.99935 0.93121 1.03003 1.21087 0.92230 0.98944 1.01653 0.90255 0.90279 0.90598 0.83942 0.91689 0.89709 0.92546 0.88160 0.89338 0.88826 0.95295 0.97378 0.92335 0.89812 0.91210 0.90278 0.89658 0.92472 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 2 C -0.09 -1.54 5.88 -19.85 -0.12 -1.66 16 3 C -0.12 -2.51 9.33 22.26 0.21 -2.31 16 4 C -0.10 -2.67 5.89 -19.77 -0.12 -2.78 16 5 C -0.11 -2.91 9.73 71.24 0.69 -2.22 16 6 C 0.06 1.56 5.54 22.51 0.12 1.69 16 7 O -0.31 -10.44 8.38 -92.42 -0.77 -11.21 16 8 C 0.09 2.65 4.37 30.94 0.14 2.78 16 9 C -0.01 -0.28 7.52 83.58 0.63 0.35 16 10 N -0.48 -21.37 6.32 -932.85 -5.89 -27.26 16 11 C 0.14 6.74 3.64 85.56 0.31 7.05 16 12 C -0.52 -31.79 9.94 25.60 0.25 -31.54 16 13 H 0.03 1.78 8.06 -2.92 -0.02 1.76 16 14 C 0.00 0.19 5.47 84.66 0.46 0.65 16 15 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 16 Si 0.96 44.46 27.47 68.60 1.88 46.34 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 C -0.01 -0.42 7.27 83.58 0.61 0.19 16 21 C -0.10 -2.42 5.89 -19.77 -0.12 -2.54 16 22 C -0.11 -2.21 9.65 71.24 0.69 -1.52 16 23 C -0.12 -2.26 9.35 22.25 0.21 -2.05 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 26 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 28 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.08 1.71 8.05 -2.39 -0.02 1.70 16 30 H 0.06 1.66 5.48 -2.39 -0.01 1.65 16 31 H 0.10 2.53 7.92 -2.39 -0.02 2.51 16 32 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.09 2.66 7.91 -2.39 -0.02 2.64 16 34 H 0.03 1.41 7.14 -2.39 -0.02 1.39 16 35 H 0.01 0.39 6.73 -2.38 -0.02 0.38 16 36 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 37 H 0.08 2.90 7.42 -2.39 -0.02 2.88 16 38 H 0.07 2.79 6.49 -2.38 -0.02 2.78 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 41 H 0.06 1.37 7.53 -2.39 -0.02 1.35 16 42 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -74.00 340.33 1.14 -72.86 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.93 Total: 14.73 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.68 Total: -34.36 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -5.59 Total: -88.36 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.77 Total: -11.21 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -74.00 1.14 -72.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228407410.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.489 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds