Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 119.94738 * 2 1 4 4 C 1.38145 * 120.05871 * 179.70194 * 3 2 1 5 5 C 1.50704 * 120.03073 * 180.29845 * 4 3 2 6 6 C 1.38730 * 119.94375 * 0.27656 * 4 3 2 7 7 O 1.35897 * 120.06058 * 180.02562 * 6 4 3 8 8 C 1.42894 * 116.99993 * 89.99583 * 7 6 4 9 9 H 1.08995 * 110.64254 * 31.69673 * 8 7 6 10 10 C 1.55165 * 110.71691 * 155.02881 * 8 7 6 11 11 C 1.54914 * 101.58168 * 153.86672 * 10 8 7 12 12 N 1.47435 * 104.82964 * 322.99237 * 11 10 8 13 13 C 1.36938 * 125.64256 * 204.16660 * 12 11 10 14 14 H 1.07997 * 119.99759 * 161.47712 * 13 12 11 15 15 C 1.38806 * 120.00191 * 341.47130 * 13 12 11 16 16 N 1.31627 * 119.99874 * 157.63605 * 15 13 12 17 17 Si 1.86807 * 120.00357 * 337.63999 * 15 13 12 18 18 H 1.48498 * 109.46873 * 84.53385 * 17 15 13 19 19 H 1.48502 * 109.47163 * 204.53631 * 17 15 13 20 20 H 1.48500 * 109.46704 * 324.53185 * 17 15 13 21 21 C 1.47021 * 108.70444 * 24.12474 * 12 11 10 22 22 C 1.38735 * 119.88577 * 0.02562 * 6 4 3 23 23 C 1.50701 * 120.02625 * 179.97438 * 22 6 4 24 24 C 1.38138 * 119.94553 * 359.97438 * 22 6 4 25 25 H 1.09003 * 109.47537 * 89.99890 * 1 2 3 26 26 H 1.09002 * 109.47257 * 210.00113 * 1 2 3 27 27 H 1.09002 * 109.46862 * 330.00169 * 1 2 3 28 28 H 1.08007 * 119.97390 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.46960 * 89.99873 * 5 4 3 30 30 H 1.08998 * 109.46857 * 210.00197 * 5 4 3 31 31 H 1.09002 * 109.46799 * 329.99650 * 5 4 3 32 32 H 1.09001 * 111.00097 * 271.93499 * 10 8 7 33 33 H 1.08993 * 111.00653 * 35.79546 * 10 8 7 34 34 H 1.08999 * 110.36704 * 204.15165 * 11 10 8 35 35 H 1.09006 * 110.36749 * 81.82470 * 11 10 8 36 36 H 0.97004 * 119.99866 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.87880 * 239.52654 * 21 12 11 38 38 H 1.09000 * 109.87933 * 118.36008 * 21 12 11 39 39 H 1.08995 * 109.47628 * 89.99882 * 23 22 6 40 40 H 1.09006 * 109.46861 * 209.99876 * 23 22 6 41 41 H 1.09000 * 109.47441 * 329.99423 * 23 22 6 42 42 H 1.07999 * 119.97347 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.3302 2.5069 0.0130 6 6 4.2734 -0.0001 0.0067 7 8 5.6324 -0.0002 0.0133 8 6 6.2749 -0.0033 1.2897 9 1 5.6724 -0.5409 2.0218 10 6 7.6968 -0.6159 1.1869 11 6 8.4166 0.0679 2.3761 12 7 7.8755 1.4390 2.4069 13 6 8.5015 2.5320 2.9442 14 1 8.1844 3.5264 2.6668 15 6 9.5434 2.3619 3.8454 16 7 10.4205 3.3263 4.0270 17 14 9.7008 0.7642 4.8005 18 1 10.4262 -0.2357 3.9764 19 1 10.4538 1.0104 6.0566 20 1 8.3475 0.2478 5.1278 21 6 6.5531 1.4385 1.7644 22 6 3.5785 -1.2009 0.0003 23 6 4.3301 -2.5071 0.0002 24 6 2.1972 -1.1981 -0.0059 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6558 2.1326 -0.0004 29 1 4.5068 2.8191 1.0422 30 1 5.2851 2.3792 -0.4969 31 1 3.7424 3.2670 -0.5016 32 1 7.6666 -1.6975 1.3182 33 1 8.1686 -0.3517 0.2406 34 1 9.4932 0.0886 2.2067 35 1 8.1881 -0.4511 3.3071 36 1 11.1489 3.2073 4.6565 37 1 6.5557 2.1160 0.9105 38 1 5.7923 1.7459 2.4819 39 1 4.5067 -2.8248 1.0278 40 1 3.7421 -3.2645 -0.5183 41 1 5.2850 -2.3769 -0.5091 42 1 1.6558 -2.1326 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228407583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = 3.246104 kcal Electronic energy + Delta-G solvation = -21748.395452 eV Core-core repulsion = 18694.062445 eV Total energy + Delta-G solvation = -3054.333007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.32200 -38.22395 -36.32699 -33.59716 -32.85727 -32.16102 -29.70651 -28.41106 -27.77616 -26.67555 -25.95625 -24.10058 -21.15098 -20.98421 -20.92473 -19.90363 -17.74393 -17.01613 -16.33878 -15.36972 -15.22705 -14.59694 -14.43612 -13.95116 -13.81733 -13.46157 -13.22067 -13.05602 -13.02762 -12.95567 -12.75533 -12.60240 -12.24989 -12.13726 -11.93847 -11.61371 -11.51866 -11.18721 -11.09461 -11.02802 -10.89969 -10.58596 -10.11375 -9.96058 -9.51944 -9.40807 -8.68058 -8.58492 -8.26728 -7.05334 -5.94842 -3.25443 1.19249 1.33464 3.33678 3.39052 3.47421 3.49689 4.04703 4.54285 4.70866 4.74007 4.80336 4.94081 5.10295 5.19620 5.21659 5.31340 5.35733 5.42177 5.43757 5.44598 5.51570 5.59789 5.63202 5.71023 5.74547 5.83165 5.86129 5.94326 6.09020 6.11545 6.22240 6.34550 6.41476 6.48165 6.50138 6.54261 6.58642 6.65918 6.73281 6.90252 7.69130 7.82536 8.30815 8.82438 9.68076 10.15920 11.21243 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.004690 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.086192 B = 5968.499197 C = 6461.567026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.088 4.088 5 C -0.119 4.119 6 C 0.093 3.907 7 O -0.322 6.322 8 C 0.083 3.917 9 H 0.067 0.933 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.606 5.606 13 C -0.241 4.241 14 H 0.093 0.907 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 0.881 3.119 18 H -0.284 1.284 19 H -0.301 1.301 20 H -0.277 1.277 21 C 0.113 3.887 22 C -0.097 4.097 23 C -0.112 4.112 24 C -0.120 4.120 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.051 0.949 38 H 0.030 0.970 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 -9.866 -8.924 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.135 4.135 4 C -0.088 4.088 5 C -0.176 4.176 6 C 0.049 3.951 7 O -0.238 6.238 8 C 0.027 3.973 9 H 0.085 0.915 10 C -0.162 4.162 11 C -0.014 4.014 12 N -0.334 5.334 13 C -0.368 4.368 14 H 0.110 0.890 15 C -0.176 4.176 16 N -0.552 5.552 17 Si 0.712 3.288 18 H -0.211 1.211 19 H -0.229 1.229 20 H -0.203 1.203 21 C -0.012 4.012 22 C -0.098 4.098 23 C -0.169 4.169 24 C -0.138 4.138 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.137 -9.712 -8.950 21.636 hybrid contribution -0.004 -0.844 0.919 1.248 sum -17.141 -10.556 -8.031 21.673 Atomic orbital electron populations 1.20753 0.91258 1.02633 1.02118 1.19853 0.95943 0.93049 1.00273 1.20791 0.92911 0.97616 1.02228 1.20279 0.93850 0.95499 0.99202 1.20947 1.00545 0.92921 1.03156 1.18390 0.83515 0.91346 1.01806 1.86016 1.14704 1.93785 1.29334 1.23470 0.93317 0.97468 0.83044 0.91496 1.22863 0.93623 0.98971 1.00727 1.21987 0.98400 0.86478 0.94567 1.44694 1.15011 1.04724 1.68994 1.18640 1.12837 0.85542 1.19773 0.88968 1.24984 0.96945 0.96883 0.98797 1.69846 1.13942 1.33720 1.37652 0.86992 0.77394 0.84415 0.80032 1.21088 1.22931 1.20344 1.22033 0.88341 0.94292 0.96579 1.20182 0.93890 0.95164 1.00553 1.20697 1.00568 0.93285 1.02307 1.20731 0.92824 0.97538 1.02698 0.91337 0.91710 0.91607 0.85897 0.90430 0.90213 0.91831 0.91112 0.89881 0.91652 0.95580 0.92677 0.93096 0.95166 0.91406 0.91734 0.90647 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.09 -1.02 5.88 -104.60 -0.62 -1.63 16 3 C -0.12 -1.43 9.35 -39.61 -0.37 -1.80 16 4 C -0.09 -1.24 5.89 -104.47 -0.62 -1.86 16 5 C -0.12 -1.64 8.14 36.01 0.29 -1.35 16 6 C 0.09 1.41 5.56 -39.22 -0.22 1.19 16 7 O -0.32 -5.33 7.93 -19.42 -0.15 -5.48 16 8 C 0.08 1.45 3.47 -24.89 -0.09 1.36 16 9 H 0.07 1.13 7.97 -51.93 -0.41 0.72 16 10 C -0.12 -2.16 6.81 -24.58 -0.17 -2.33 16 11 C 0.11 2.44 4.69 -2.52 -0.01 2.43 16 12 N -0.61 -15.00 3.21 -170.06 -0.55 -15.55 16 13 C -0.24 -6.93 10.57 -15.06 -0.16 -7.09 16 14 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 15 C 0.02 0.66 5.43 -17.43 -0.09 0.56 16 16 N -0.91 -28.16 13.97 55.49 0.78 -27.38 16 17 Si 0.88 22.66 24.27 -169.99 -4.13 18.54 16 18 H -0.28 -6.97 6.49 56.52 0.37 -6.60 16 19 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 20 H -0.28 -7.06 6.66 56.52 0.38 -6.68 16 21 C 0.11 2.33 5.45 -3.06 -0.02 2.31 16 22 C -0.10 -1.28 5.89 -104.47 -0.62 -1.90 16 23 C -0.11 -1.25 9.79 36.01 0.35 -0.90 16 24 C -0.12 -1.38 9.35 -39.61 -0.37 -1.75 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 29 H 0.08 1.13 6.89 -51.93 -0.36 0.77 16 30 H 0.08 1.20 6.36 -51.93 -0.33 0.87 16 31 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 34 H 0.07 1.52 6.63 -51.93 -0.34 1.17 16 35 H 0.03 0.59 5.58 -51.93 -0.29 0.30 16 36 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 37 H 0.05 1.05 5.76 -51.93 -0.30 0.75 16 38 H 0.03 0.63 7.77 -51.93 -0.40 0.23 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -31.62 327.81 -8.11 -39.73 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.66 Total: -1.52 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.34 Total: -13.27 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.23 Total: -42.93 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.15 Total: -5.48 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.13 Total: 18.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.62 -8.11 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228407583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.974 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds