Wall clock time and date at job start Mon Mar 30 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38257 * 119.94738 * 2 1 4 4 C 1.38145 * 120.05871 * 179.70194 * 3 2 1 5 5 C 1.50704 * 120.03073 * 180.29845 * 4 3 2 6 6 C 1.38730 * 119.94375 * 0.27656 * 4 3 2 7 7 O 1.35897 * 120.06058 * 180.02562 * 6 4 3 8 8 C 1.42894 * 116.99993 * 89.99583 * 7 6 4 9 9 H 1.08995 * 110.64254 * 31.69673 * 8 7 6 10 10 C 1.55165 * 110.71691 * 155.02881 * 8 7 6 11 11 C 1.54914 * 101.58168 * 153.86672 * 10 8 7 12 12 N 1.47435 * 104.82964 * 322.99237 * 11 10 8 13 13 C 1.36938 * 125.64256 * 204.16660 * 12 11 10 14 14 H 1.07997 * 119.99759 * 161.47712 * 13 12 11 15 15 C 1.38806 * 120.00191 * 341.47130 * 13 12 11 16 16 N 1.31627 * 119.99874 * 157.63605 * 15 13 12 17 17 Si 1.86807 * 120.00357 * 337.63999 * 15 13 12 18 18 H 1.48498 * 109.46873 * 84.53385 * 17 15 13 19 19 H 1.48502 * 109.47163 * 204.53631 * 17 15 13 20 20 H 1.48500 * 109.46704 * 324.53185 * 17 15 13 21 21 C 1.47021 * 108.70444 * 24.12474 * 12 11 10 22 22 C 1.38735 * 119.88577 * 0.02562 * 6 4 3 23 23 C 1.50701 * 120.02625 * 179.97438 * 22 6 4 24 24 C 1.38138 * 119.94553 * 359.97438 * 22 6 4 25 25 H 1.09003 * 109.47537 * 89.99890 * 1 2 3 26 26 H 1.09002 * 109.47257 * 210.00113 * 1 2 3 27 27 H 1.09002 * 109.46862 * 330.00169 * 1 2 3 28 28 H 1.08007 * 119.97390 * 359.97438 * 3 2 1 29 29 H 1.08994 * 109.46960 * 89.99873 * 5 4 3 30 30 H 1.08998 * 109.46857 * 210.00197 * 5 4 3 31 31 H 1.09002 * 109.46799 * 329.99650 * 5 4 3 32 32 H 1.09001 * 111.00097 * 271.93499 * 10 8 7 33 33 H 1.08993 * 111.00653 * 35.79546 * 10 8 7 34 34 H 1.08999 * 110.36704 * 204.15165 * 11 10 8 35 35 H 1.09006 * 110.36749 * 81.82470 * 11 10 8 36 36 H 0.97004 * 119.99866 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.87880 * 239.52654 * 21 12 11 38 38 H 1.09000 * 109.87933 * 118.36008 * 21 12 11 39 39 H 1.08995 * 109.47628 * 89.99882 * 23 22 6 40 40 H 1.09006 * 109.46861 * 209.99876 * 23 22 6 41 41 H 1.09000 * 109.47441 * 329.99423 * 23 22 6 42 42 H 1.07999 * 119.97347 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5786 1.2007 0.0062 5 6 4.3302 2.5069 0.0130 6 6 4.2734 -0.0001 0.0067 7 8 5.6324 -0.0002 0.0133 8 6 6.2749 -0.0033 1.2897 9 1 5.6724 -0.5409 2.0218 10 6 7.6968 -0.6159 1.1869 11 6 8.4166 0.0679 2.3761 12 7 7.8755 1.4390 2.4069 13 6 8.5015 2.5320 2.9442 14 1 8.1844 3.5264 2.6668 15 6 9.5434 2.3619 3.8454 16 7 10.4205 3.3263 4.0270 17 14 9.7008 0.7642 4.8005 18 1 10.4262 -0.2357 3.9764 19 1 10.4538 1.0104 6.0566 20 1 8.3475 0.2478 5.1278 21 6 6.5531 1.4385 1.7644 22 6 3.5785 -1.2009 0.0003 23 6 4.3301 -2.5071 0.0002 24 6 2.1972 -1.1981 -0.0059 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6558 2.1326 -0.0004 29 1 4.5068 2.8191 1.0422 30 1 5.2851 2.3792 -0.4969 31 1 3.7424 3.2670 -0.5016 32 1 7.6666 -1.6975 1.3182 33 1 8.1686 -0.3517 0.2406 34 1 9.4932 0.0886 2.2067 35 1 8.1881 -0.4511 3.3071 36 1 11.1489 3.2073 4.6565 37 1 6.5557 2.1160 0.9105 38 1 5.7923 1.7459 2.4819 39 1 4.5067 -2.8248 1.0278 40 1 3.7421 -3.2645 -0.5183 41 1 5.2850 -2.3769 -0.5091 42 1 1.6558 -2.1326 -0.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228407583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:48 Heat of formation + Delta-G solvation = -15.058503 kcal Electronic energy + Delta-G solvation = -21749.189199 eV Core-core repulsion = 18694.062445 eV Total energy + Delta-G solvation = -3055.126754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41322 -39.57186 -37.76149 -34.57169 -34.51033 -33.53411 -31.51861 -29.89373 -28.73553 -27.62132 -27.09913 -25.91078 -22.80186 -22.32810 -21.89852 -21.17152 -19.10498 -18.86375 -17.43305 -17.21033 -16.62512 -16.03044 -15.56930 -15.30667 -15.02729 -14.95284 -14.39107 -14.19163 -14.10673 -13.94992 -13.87548 -13.86201 -13.75198 -13.39726 -13.26566 -13.10839 -12.90199 -12.49015 -12.41862 -12.19417 -12.12414 -11.99823 -11.95126 -11.57161 -11.48226 -10.88033 -10.70276 -9.52854 -9.25439 -9.11018 -8.20994 -5.49293 0.20213 0.38919 1.28811 1.37540 1.46661 2.32962 2.39092 2.91770 3.00845 3.34062 3.65336 3.76070 3.83925 3.87033 3.95301 4.02384 4.26107 4.35835 4.38472 4.44150 4.58016 4.60809 4.68778 4.72353 4.72549 4.77942 4.82581 4.87204 4.89877 4.90809 4.96401 5.01922 5.12304 5.14152 5.30800 5.36557 5.48519 5.61547 5.61919 5.67171 5.92588 6.06165 6.63835 6.70173 7.48348 8.03773 8.98803 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.004690 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.086192 B = 5968.499197 C = 6461.567026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.106 4.106 5 C -0.114 4.114 6 C 0.057 3.943 7 O -0.325 6.325 8 C 0.097 3.903 9 H 0.078 0.922 10 C -0.110 4.110 11 C 0.102 3.898 12 N -0.625 5.625 13 C -0.241 4.241 14 H 0.057 0.943 15 C -0.034 4.034 16 N -0.955 5.955 17 Si 0.947 3.053 18 H -0.262 1.262 19 H -0.305 1.305 20 H -0.270 1.270 21 C 0.112 3.888 22 C -0.103 4.103 23 C -0.111 4.111 24 C -0.123 4.123 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.140 0.860 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.264 0.736 37 H 0.044 0.956 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.895 -12.962 -9.391 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.106 4.106 5 C -0.170 4.170 6 C 0.013 3.987 7 O -0.242 6.242 8 C 0.041 3.959 9 H 0.096 0.904 10 C -0.148 4.148 11 C -0.022 4.022 12 N -0.353 5.353 13 C -0.369 4.369 14 H 0.074 0.926 15 C -0.229 4.229 16 N -0.601 5.601 17 Si 0.775 3.225 18 H -0.188 1.188 19 H -0.233 1.233 20 H -0.196 1.196 21 C -0.013 4.013 22 C -0.103 4.103 23 C -0.167 4.167 24 C -0.140 4.140 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.158 0.842 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.619 -12.838 -9.448 25.278 hybrid contribution 0.604 0.207 0.960 1.153 sum -19.015 -12.631 -8.488 24.355 Atomic orbital electron populations 1.20826 0.88746 1.03774 1.03289 1.20289 0.97786 0.92491 0.98116 1.21053 0.92184 0.99113 1.02044 1.20411 0.94916 0.95105 1.00165 1.20848 1.00035 0.94016 1.02146 1.18690 0.82834 0.92594 1.04554 1.86020 1.16044 1.93755 1.28334 1.23209 0.93841 0.94776 0.84075 0.90417 1.22791 0.92617 1.00819 0.98555 1.22119 0.98076 0.85281 0.96734 1.44785 1.16801 1.04972 1.68789 1.18557 1.12819 0.85809 1.19700 0.92557 1.25644 0.96716 1.00696 0.99827 1.69974 1.14972 1.36391 1.38791 0.85936 0.77719 0.80646 0.78241 1.18785 1.23299 1.19571 1.22126 0.86326 0.97027 0.95810 1.20458 0.94799 0.95177 0.99868 1.20736 1.00248 0.92893 1.02865 1.21105 0.92330 0.98908 1.01704 0.89995 0.90286 0.90846 0.84207 0.91937 0.92257 0.89839 0.87125 0.89964 0.93120 0.95099 0.92684 0.93778 0.95764 0.90784 0.89467 0.91682 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.23 0.71 -0.62 16 2 C -0.09 -1.67 5.88 -19.85 -0.12 -1.79 16 3 C -0.13 -2.83 9.35 22.25 0.21 -2.62 16 4 C -0.11 -2.92 5.89 -19.77 -0.12 -3.04 16 5 C -0.11 -3.22 8.14 71.24 0.58 -2.64 16 6 C 0.06 1.65 5.56 22.51 0.13 1.77 16 7 O -0.32 -10.50 7.93 -92.39 -0.73 -11.24 16 8 C 0.10 3.29 3.47 31.79 0.11 3.40 16 9 H 0.08 2.47 7.97 -2.39 -0.02 2.45 16 10 C -0.11 -3.61 6.81 31.99 0.22 -3.39 16 11 C 0.10 4.37 4.69 86.85 0.41 4.78 16 12 N -0.63 -31.37 3.21 -691.96 -2.22 -33.59 16 13 C -0.24 -14.35 10.57 84.03 0.89 -13.46 16 14 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 15 C -0.03 -2.05 5.43 84.86 0.46 -1.59 16 16 N -0.95 -61.23 13.97 21.65 0.30 -60.93 16 17 Si 0.95 47.11 24.27 68.60 1.66 48.78 16 18 H -0.26 -12.06 6.49 99.48 0.65 -11.41 16 19 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 20 H -0.27 -13.00 6.66 99.48 0.66 -12.34 16 21 C 0.11 4.70 5.45 86.73 0.47 5.17 16 22 C -0.10 -2.45 5.89 -19.77 -0.12 -2.57 16 23 C -0.11 -2.14 9.79 71.24 0.70 -1.45 16 24 C -0.12 -2.41 9.35 22.25 0.21 -2.21 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 27 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 28 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 29 H 0.06 1.91 6.89 -2.39 -0.02 1.89 16 30 H 0.06 1.88 6.36 -2.39 -0.02 1.87 16 31 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 32 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 34 H 0.05 2.30 6.63 -2.39 -0.02 2.28 16 35 H 0.03 1.32 5.58 -2.38 -0.01 1.31 16 36 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 37 H 0.04 1.90 5.76 -2.39 -0.01 1.88 16 38 H 0.02 1.04 7.77 -2.39 -0.02 1.02 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16 41 H 0.06 1.39 7.53 -2.39 -0.02 1.38 16 42 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -70.39 327.81 4.64 -65.74 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.89 Total: 11.48 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 4.74 Total: -20.25 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -1.92 Total: -94.52 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.73 Total: -11.24 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 1.66 Total: 48.78 kcal Total: -70.39 4.64 -65.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228407583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.685 kcal (2) G-P(sol) polarization free energy of solvation -70.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds