Wall clock time and date at job start Mon Mar 30 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 119.94446 * 2 1 4 4 C 1.38144 * 120.05233 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.02836 * 180.25130 * 4 3 2 6 6 C 1.38735 * 119.94607 * 359.97438 * 4 3 2 7 7 O 1.35898 * 120.05254 * 179.97438 * 6 4 3 8 8 C 1.42908 * 116.99710 * 90.00117 * 7 6 4 9 9 H 1.08992 * 110.88624 * 327.57246 * 8 7 6 10 10 C 1.55159 * 111.00239 * 203.64341 * 8 7 6 11 11 C 1.54324 * 102.94245 * 206.42332 * 10 8 7 12 12 N 1.47031 * 107.26910 * 22.19786 * 11 10 8 13 13 C 1.36933 * 125.64607 * 181.09599 * 12 11 10 14 14 H 1.08002 * 119.99760 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99920 * 359.95267 * 13 12 11 16 16 N 1.31614 * 120.00317 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99856 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47164 * 60.00321 * 17 15 13 19 19 H 1.48499 * 109.47130 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47036 * 300.00255 * 17 15 13 21 21 C 1.47420 * 108.70430 * 1.05665 * 12 11 10 22 22 C 1.38727 * 119.88551 * 359.97438 * 6 4 3 23 23 C 1.50702 * 120.02556 * 180.02562 * 22 6 4 24 24 C 1.38142 * 119.95078 * 0.02562 * 22 6 4 25 25 H 1.09001 * 109.46841 * 270.04594 * 1 2 3 26 26 H 1.09003 * 109.46722 * 30.04008 * 1 2 3 27 27 H 1.08996 * 109.47584 * 150.04247 * 1 2 3 28 28 H 1.08001 * 119.97320 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47390 * 269.73251 * 5 4 3 30 30 H 1.09000 * 109.46441 * 29.72833 * 5 4 3 31 31 H 1.09000 * 109.47102 * 149.72773 * 5 4 3 32 32 H 1.08994 * 110.72379 * 324.79090 * 10 8 7 33 33 H 1.08994 * 110.71740 * 88.06139 * 10 8 7 34 34 H 1.08994 * 109.88485 * 262.77885 * 11 10 8 35 35 H 1.08996 * 110.00961 * 141.68022 * 11 10 8 36 36 H 0.97006 * 120.00243 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.36793 * 217.03465 * 21 12 11 38 38 H 1.09000 * 110.45901 * 94.75785 * 21 12 11 39 39 H 1.08997 * 109.46996 * 90.00121 * 23 22 6 40 40 H 1.08997 * 109.47596 * 210.00062 * 23 22 6 41 41 H 1.08999 * 109.47236 * 330.00175 * 23 22 6 42 42 H 1.07992 * 119.97487 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.3303 2.5069 0.0063 6 6 4.2734 -0.0001 0.0016 7 8 5.6324 -0.0001 0.0016 8 6 6.2811 0.0010 1.2750 9 1 5.6916 0.5477 2.0109 10 6 7.7159 0.5819 1.1676 11 6 8.4514 -0.0944 2.3437 12 7 7.7073 -1.3174 2.6786 13 6 8.0218 -2.1931 3.6833 14 1 7.4090 -3.0666 3.8498 15 6 9.1286 -1.9581 4.4875 16 7 9.8755 -0.8935 4.2846 17 14 9.5582 -3.1531 5.8576 18 1 9.8131 -4.4973 5.2802 19 1 10.7748 -2.6788 6.5647 20 1 8.4278 -3.2328 6.8173 21 6 6.5658 -1.4443 1.7543 22 6 3.5785 -1.2008 0.0027 23 6 4.3301 -2.5071 0.0044 24 6 2.1971 -1.1982 0.0021 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3634 -0.8903 -0.5131 28 1 1.6558 2.1326 -0.0004 29 1 4.5161 2.8237 -1.0200 30 1 3.7378 3.2647 0.5188 31 1 5.2806 2.3769 0.5241 32 1 8.1733 0.3068 0.2173 33 1 7.7038 1.6647 1.2918 34 1 8.4702 0.5753 3.2035 35 1 9.4697 -0.3489 2.0499 36 1 10.6487 -0.7292 4.8468 37 1 5.6984 -1.8488 2.2760 38 1 6.8292 -2.0796 0.9086 39 1 4.5108 -2.8208 1.0325 40 1 3.7401 -3.2664 -0.5088 41 1 5.2829 -2.3788 -0.5091 42 1 1.6558 -2.1326 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228407584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:53 Heat of formation + Delta-G solvation = -1.050633 kcal Electronic energy + Delta-G solvation = -21678.514115 eV Core-core repulsion = 18623.994788 eV Total energy + Delta-G solvation = -3054.519327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.20100 -37.97592 -36.05151 -33.51740 -32.78418 -32.02530 -29.24216 -28.07028 -27.38160 -26.59672 -25.76546 -24.29184 -21.01922 -20.86605 -20.11366 -19.97857 -17.60017 -16.97804 -16.21786 -15.11787 -14.73722 -14.59528 -14.25190 -13.95441 -13.57210 -13.29546 -13.04375 -13.01715 -12.93697 -12.84903 -12.59252 -12.40773 -12.18617 -11.85062 -11.69637 -11.46771 -11.18483 -11.00254 -10.90656 -10.83500 -10.66272 -10.27585 -10.13756 -9.81752 -9.71664 -9.25735 -8.60403 -8.50808 -8.17470 -6.84900 -5.71884 -3.05969 1.28476 1.40939 3.40752 3.44435 3.45950 3.51415 4.16047 4.50975 4.78357 4.80592 4.88166 5.24812 5.27451 5.37219 5.43011 5.45002 5.48276 5.51957 5.58638 5.66980 5.71063 5.73207 5.76685 5.78827 5.84495 5.90435 5.95073 6.18493 6.27474 6.39549 6.45837 6.50262 6.51613 6.57865 6.65368 6.68131 6.74443 6.99563 7.53721 7.59079 7.78816 7.96970 8.24609 9.20455 9.80622 10.46001 11.39790 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.004465 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.013309 B = 6269.399594 C = 6834.519930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.098 4.098 5 C -0.110 4.110 6 C 0.098 3.902 7 O -0.325 6.325 8 C 0.079 3.921 9 H 0.067 0.933 10 C -0.137 4.137 11 C 0.178 3.822 12 N -0.604 5.604 13 C -0.229 4.229 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.923 5.923 17 Si 0.913 3.087 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.119 3.881 22 C -0.090 4.090 23 C -0.118 4.118 24 C -0.118 4.118 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.121 0.879 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.253 0.747 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 4.081 -9.612 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.098 4.098 5 C -0.167 4.167 6 C 0.054 3.946 7 O -0.242 6.242 8 C 0.023 3.977 9 H 0.085 0.915 10 C -0.175 4.175 11 C 0.054 3.946 12 N -0.332 5.332 13 C -0.357 4.357 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.212 1.212 21 C -0.007 4.007 22 C -0.091 4.091 23 C -0.174 4.174 24 C -0.136 4.136 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.092 4.068 -9.592 18.339 hybrid contribution 0.148 -0.598 0.930 1.116 sum -14.944 3.469 -8.662 17.618 Atomic orbital electron populations 1.20744 0.91319 1.02466 1.02161 1.19836 0.95889 0.93066 1.00558 1.20720 0.92835 0.97502 1.02648 1.20195 0.93881 0.95247 1.00524 1.20687 1.00311 0.93260 1.02396 1.18393 0.83734 0.91277 1.01228 1.86006 1.14430 1.93813 1.29958 1.23722 0.93277 0.98258 0.82466 0.91482 1.23021 0.93442 0.99591 1.01472 1.21182 0.93975 0.87273 0.92189 1.44364 1.27787 1.25659 1.35349 1.19009 1.08587 1.02117 1.06036 0.90456 1.24803 0.97756 0.98102 0.99665 1.69937 1.18590 1.27368 1.41098 0.86185 0.77565 0.80208 0.81716 1.21113 1.21543 1.21161 1.22097 0.91395 0.93794 0.93421 1.20254 0.93824 0.95480 0.99519 1.20892 1.00478 0.92964 1.03064 1.20767 0.92923 0.97544 1.02351 0.91339 0.91761 0.91709 0.86097 0.91138 0.91871 0.90993 0.91256 0.91711 0.93311 0.93372 0.93641 0.94299 0.95199 0.90526 0.91978 0.90411 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.09 -1.11 5.88 -104.60 -0.62 -1.72 16 3 C -0.12 -1.47 9.35 -39.61 -0.37 -1.84 16 4 C -0.10 -1.39 5.89 -104.47 -0.62 -2.01 16 5 C -0.11 -1.36 9.79 36.01 0.35 -1.01 16 6 C 0.10 1.57 5.57 -39.22 -0.22 1.35 16 7 O -0.33 -5.76 8.18 -19.42 -0.16 -5.92 16 8 C 0.08 1.50 2.83 -24.58 -0.07 1.43 16 9 H 0.07 1.30 7.99 -51.93 -0.41 0.88 16 10 C -0.14 -2.68 6.69 -24.90 -0.17 -2.84 16 11 C 0.18 4.40 5.38 -3.06 -0.02 4.38 16 12 N -0.60 -15.76 3.39 -170.07 -0.58 -16.34 16 13 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 14 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 16 N -0.92 -27.15 10.31 55.49 0.57 -26.58 16 17 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.12 2.58 5.26 -2.53 -0.01 2.57 16 22 C -0.09 -1.34 5.89 -104.48 -0.62 -1.96 16 23 C -0.12 -1.66 8.32 36.01 0.30 -1.36 16 24 C -0.12 -1.51 9.35 -39.60 -0.37 -1.88 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.07 0.99 6.90 -51.93 -0.36 0.63 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.05 1.31 7.38 -51.93 -0.38 0.92 16 35 H 0.05 1.30 7.50 -51.93 -0.39 0.91 16 36 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.04 0.83 6.92 -51.93 -0.36 0.47 16 38 H 0.03 0.65 7.09 -51.93 -0.37 0.28 16 39 H 0.08 1.14 6.49 -51.93 -0.34 0.80 16 40 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 41 H 0.08 1.19 6.66 -51.93 -0.35 0.84 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 332.83 15.07 5.02 5.02 Total: -1.00 -30.60 332.83 -9.20 -39.80 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.72 Total: -0.75 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -2.31 Total: -12.37 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.01 Total: -42.92 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.16 Total: -5.92 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.60 -9.20 -39.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228407584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.752 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds