Wall clock time and date at job start Mon Mar 30 2020 02:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38265 * 119.94446 * 2 1 4 4 C 1.38144 * 120.05233 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.02836 * 180.25130 * 4 3 2 6 6 C 1.38735 * 119.94607 * 359.97438 * 4 3 2 7 7 O 1.35898 * 120.05254 * 179.97438 * 6 4 3 8 8 C 1.42908 * 116.99710 * 90.00117 * 7 6 4 9 9 H 1.08992 * 110.88624 * 327.57246 * 8 7 6 10 10 C 1.55159 * 111.00239 * 203.64341 * 8 7 6 11 11 C 1.54324 * 102.94245 * 206.42332 * 10 8 7 12 12 N 1.47031 * 107.26910 * 22.19786 * 11 10 8 13 13 C 1.36933 * 125.64607 * 181.09599 * 12 11 10 14 14 H 1.08002 * 119.99760 * 179.97438 * 13 12 11 15 15 C 1.38813 * 119.99920 * 359.95267 * 13 12 11 16 16 N 1.31614 * 120.00317 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99856 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47164 * 60.00321 * 17 15 13 19 19 H 1.48499 * 109.47130 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47036 * 300.00255 * 17 15 13 21 21 C 1.47420 * 108.70430 * 1.05665 * 12 11 10 22 22 C 1.38727 * 119.88551 * 359.97438 * 6 4 3 23 23 C 1.50702 * 120.02556 * 180.02562 * 22 6 4 24 24 C 1.38142 * 119.95078 * 0.02562 * 22 6 4 25 25 H 1.09001 * 109.46841 * 270.04594 * 1 2 3 26 26 H 1.09003 * 109.46722 * 30.04008 * 1 2 3 27 27 H 1.08996 * 109.47584 * 150.04247 * 1 2 3 28 28 H 1.08001 * 119.97320 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47390 * 269.73251 * 5 4 3 30 30 H 1.09000 * 109.46441 * 29.72833 * 5 4 3 31 31 H 1.09000 * 109.47102 * 149.72773 * 5 4 3 32 32 H 1.08994 * 110.72379 * 324.79090 * 10 8 7 33 33 H 1.08994 * 110.71740 * 88.06139 * 10 8 7 34 34 H 1.08994 * 109.88485 * 262.77885 * 11 10 8 35 35 H 1.08996 * 110.00961 * 141.68022 * 11 10 8 36 36 H 0.97006 * 120.00243 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.36793 * 217.03465 * 21 12 11 38 38 H 1.09000 * 110.45901 * 94.75785 * 21 12 11 39 39 H 1.08997 * 109.46996 * 90.00121 * 23 22 6 40 40 H 1.08997 * 109.47596 * 210.00062 * 23 22 6 41 41 H 1.08999 * 109.47236 * 330.00175 * 23 22 6 42 42 H 1.07992 * 119.97487 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.3303 2.5069 0.0063 6 6 4.2734 -0.0001 0.0016 7 8 5.6324 -0.0001 0.0016 8 6 6.2811 0.0010 1.2750 9 1 5.6916 0.5477 2.0109 10 6 7.7159 0.5819 1.1676 11 6 8.4514 -0.0944 2.3437 12 7 7.7073 -1.3174 2.6786 13 6 8.0218 -2.1931 3.6833 14 1 7.4090 -3.0666 3.8498 15 6 9.1286 -1.9581 4.4875 16 7 9.8755 -0.8935 4.2846 17 14 9.5582 -3.1531 5.8576 18 1 9.8131 -4.4973 5.2802 19 1 10.7748 -2.6788 6.5647 20 1 8.4278 -3.2328 6.8173 21 6 6.5658 -1.4443 1.7543 22 6 3.5785 -1.2008 0.0027 23 6 4.3301 -2.5071 0.0044 24 6 2.1971 -1.1982 0.0021 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3634 -0.8903 -0.5131 28 1 1.6558 2.1326 -0.0004 29 1 4.5161 2.8237 -1.0200 30 1 3.7378 3.2647 0.5188 31 1 5.2806 2.3769 0.5241 32 1 8.1733 0.3068 0.2173 33 1 7.7038 1.6647 1.2918 34 1 8.4702 0.5753 3.2035 35 1 9.4697 -0.3489 2.0499 36 1 10.6487 -0.7292 4.8468 37 1 5.6984 -1.8488 2.2760 38 1 6.8292 -2.0796 0.9086 39 1 4.5108 -2.8208 1.0325 40 1 3.7401 -3.2664 -0.5088 41 1 5.2829 -2.3788 -0.5091 42 1 1.6558 -2.1326 0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228407584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:52 Heat of formation + Delta-G solvation = -16.952309 kcal Electronic energy + Delta-G solvation = -21679.203664 eV Core-core repulsion = 18623.994788 eV Total energy + Delta-G solvation = -3055.208876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.36477 -39.40668 -37.62951 -34.55294 -34.38128 -33.43651 -31.14778 -29.41663 -28.63472 -27.62496 -27.05328 -26.12475 -22.45144 -22.00332 -21.86050 -21.27375 -19.06839 -18.80161 -17.33028 -16.83139 -16.34470 -16.21062 -15.35885 -15.25588 -14.82661 -14.70728 -14.37786 -14.15702 -14.09563 -13.90250 -13.87599 -13.67830 -13.44946 -13.34275 -13.07156 -12.94393 -12.68065 -12.46744 -12.26351 -12.08768 -12.04078 -12.01744 -11.95567 -11.74624 -11.47865 -10.74962 -10.68113 -9.51691 -9.23797 -8.95532 -7.87593 -5.24912 0.21691 0.39878 1.45321 1.49031 1.55390 2.34500 2.50717 2.95960 3.31200 3.67682 3.78100 3.84675 3.86430 3.96104 3.99660 4.07885 4.36246 4.40356 4.45213 4.56288 4.59825 4.67706 4.73151 4.77762 4.78047 4.80425 4.88231 4.89705 4.97224 5.01483 5.03510 5.12484 5.31649 5.36254 5.40458 5.49107 5.57857 5.63013 5.68109 5.68848 5.94240 6.14651 6.66894 7.05784 7.71295 8.35955 9.22693 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.004465 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.013309 B = 6269.399594 C = 6834.519930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.106 4.106 5 C -0.109 4.109 6 C 0.056 3.944 7 O -0.326 6.326 8 C 0.098 3.902 9 H 0.064 0.936 10 C -0.123 4.123 11 C 0.187 3.813 12 N -0.626 5.626 13 C -0.249 4.249 14 H 0.082 0.918 15 C -0.062 4.062 16 N -0.950 5.950 17 Si 0.982 3.018 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.276 1.276 21 C 0.122 3.878 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.125 4.125 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.148 0.852 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.020 0.980 35 H 0.015 0.985 36 H 0.249 0.751 37 H 0.040 0.960 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.049 4.246 -10.100 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.166 4.166 6 C 0.013 3.987 7 O -0.243 6.243 8 C 0.042 3.958 9 H 0.082 0.918 10 C -0.161 4.161 11 C 0.062 3.938 12 N -0.353 5.353 13 C -0.378 4.378 14 H 0.100 0.900 15 C -0.255 4.255 16 N -0.599 5.599 17 Si 0.809 3.191 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.202 1.202 21 C -0.004 4.004 22 C -0.106 4.106 23 C -0.170 4.170 24 C -0.143 4.143 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.166 0.834 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.774 4.227 -10.108 20.879 hybrid contribution 0.833 -0.656 1.017 1.469 sum -16.941 3.572 -9.091 19.555 Atomic orbital electron populations 1.20822 0.88638 1.03933 1.03160 1.20300 0.97842 0.92469 0.98171 1.21084 0.92190 0.99012 1.01797 1.20462 0.94930 0.95167 1.00076 1.20719 0.99678 0.93148 1.03043 1.18725 0.82900 0.92713 1.04381 1.86007 1.15976 1.93838 1.28479 1.23307 0.93104 0.95959 0.83468 0.91797 1.22838 0.93195 1.00624 0.99414 1.20924 0.93177 0.86776 0.92923 1.44671 1.29250 1.25761 1.35667 1.19412 1.08869 1.02754 1.06727 0.90028 1.25681 0.97746 0.99944 1.02159 1.70158 1.18786 1.28993 1.41915 0.85116 0.77148 0.78143 0.78690 1.20233 1.21765 1.20179 1.22165 0.89939 0.95748 0.92502 1.20430 0.94945 0.95141 1.00050 1.20826 1.00097 0.93774 1.02268 1.21070 0.92160 0.99117 1.01951 0.90390 0.90195 0.90472 0.83401 0.90202 0.89754 0.92708 0.90533 0.89144 0.96215 0.96666 0.94175 0.94220 0.95293 0.91802 0.89562 0.92231 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 2 C -0.09 -1.81 5.88 -19.85 -0.12 -1.92 16 3 C -0.12 -2.68 9.35 22.25 0.21 -2.47 16 4 C -0.11 -2.83 5.89 -19.77 -0.12 -2.94 16 5 C -0.11 -2.52 9.79 71.24 0.70 -1.82 16 6 C 0.06 1.77 5.57 22.51 0.13 1.89 16 7 O -0.33 -11.53 8.18 -92.40 -0.76 -12.28 16 8 C 0.10 3.78 2.83 31.99 0.09 3.87 16 9 H 0.06 2.49 7.99 -2.39 -0.02 2.47 16 10 C -0.12 -4.83 6.69 31.78 0.21 -4.62 16 11 C 0.19 9.58 5.38 86.73 0.47 10.04 16 12 N -0.63 -33.66 3.39 -691.98 -2.35 -36.01 16 13 C -0.25 -14.36 10.28 84.03 0.86 -13.50 16 14 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 15 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 16 N -0.95 -57.73 10.31 21.65 0.22 -57.50 16 17 Si 0.98 46.16 29.55 68.60 2.03 48.18 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 C 0.12 5.39 5.26 86.86 0.46 5.84 16 22 C -0.11 -3.03 5.89 -19.77 -0.12 -3.14 16 23 C -0.11 -3.16 8.32 71.24 0.59 -2.57 16 24 C -0.13 -2.91 9.35 22.25 0.21 -2.71 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 27 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 28 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 31 H 0.05 1.45 6.90 -2.39 -0.02 1.43 16 32 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.02 1.10 7.38 -2.39 -0.02 1.09 16 35 H 0.02 0.86 7.50 -2.39 -0.02 0.84 16 36 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 37 H 0.04 1.73 6.92 -2.39 -0.02 1.71 16 38 H 0.03 1.30 7.09 -2.39 -0.02 1.28 16 39 H 0.06 1.91 6.49 -2.39 -0.02 1.90 16 40 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 41 H 0.06 1.85 6.66 -2.39 -0.02 1.83 16 42 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -67.57 332.83 4.89 -62.68 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.99 Total: 12.80 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 4.75 Total: -17.88 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -2.13 Total: -93.51 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.76 Total: -12.28 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -67.57 4.89 -62.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228407584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.732 kcal (2) G-P(sol) polarization free energy of solvation -67.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds