Wall clock time and date at job start Mon Mar 30 2020 02:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38151 * 119.97635 * 2 1 4 4 C 1.38729 * 119.94130 * 180.29470 * 3 2 1 5 5 O 1.35902 * 120.05061 * 179.75181 * 4 3 2 6 6 C 1.42905 * 116.99867 * 186.05370 * 5 4 3 7 7 C 1.53931 * 113.73557 * 255.89718 * 6 5 4 8 8 N 1.48185 * 86.10126 * 221.95800 * 7 6 5 9 9 C 1.46900 * 111.07261 * 137.51919 * 8 7 6 10 10 C 1.50695 * 109.46952 * 70.56603 * 9 8 7 11 11 H 1.07998 * 120.00576 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99854 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00310 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00081 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47348 * 59.99850 * 14 12 10 16 16 H 1.48500 * 109.47030 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46577 * 299.99899 * 14 12 10 18 18 C 1.47963 * 90.79915 * 24.60000 * 8 7 6 19 19 C 1.38733 * 119.89354 * 359.72737 * 4 3 2 20 20 C 1.38146 * 119.94062 * 0.02562 * 19 4 3 21 21 C 1.50697 * 119.97076 * 180.02562 * 20 19 4 22 22 C 1.38265 * 119.96998 * 179.75319 * 2 1 3 23 23 C 1.50695 * 119.94633 * 359.97398 * 22 2 1 24 24 H 1.08999 * 109.47551 * 270.25331 * 1 2 3 25 25 H 1.09010 * 109.47153 * 30.24857 * 1 2 3 26 26 H 1.08998 * 109.47499 * 150.24507 * 1 2 3 27 27 H 1.08000 * 120.02620 * 0.03007 * 3 2 1 28 28 H 1.09001 * 112.93416 * 27.46014 * 6 5 4 29 29 H 1.09006 * 113.75835 * 336.23291 * 7 6 5 30 30 H 1.08991 * 113.76100 * 107.60216 * 7 6 5 31 31 H 1.09002 * 109.47120 * 190.56633 * 9 8 7 32 32 H 1.08997 * 109.47372 * 310.56500 * 9 8 7 33 33 H 0.97002 * 120.00672 * 179.97438 * 13 12 10 34 34 H 1.09000 * 113.75638 * 221.08876 * 18 8 7 35 35 H 1.08998 * 113.86134 * 89.73889 * 18 8 7 36 36 H 1.07999 * 120.02678 * 179.97438 * 19 4 3 37 37 H 1.09000 * 109.47269 * 269.97851 * 21 20 19 38 38 H 1.09003 * 109.47266 * 29.97612 * 21 20 19 39 39 H 1.08992 * 109.47228 * 149.97814 * 21 20 19 40 40 H 1.09005 * 109.47233 * 269.73383 * 23 22 2 41 41 H 1.09007 * 109.47592 * 149.72837 * 23 22 2 42 42 H 1.09004 * 109.47146 * 29.73123 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1967 0.0000 4 6 3.5845 1.1959 -0.0062 5 8 4.2657 2.3718 -0.0113 6 6 5.6860 2.2982 -0.1518 7 6 6.4518 2.5388 1.1616 8 7 7.3856 3.3541 0.3497 9 6 7.7510 4.5928 1.0496 10 6 8.6418 4.2645 2.2199 11 1 8.9095 3.2382 2.4236 12 6 9.1152 5.2743 3.0306 13 7 8.7897 6.5241 2.7823 14 14 10.2200 4.8674 4.4809 15 1 11.4497 4.1932 3.9925 16 1 10.5893 6.1196 5.1885 17 1 9.4988 3.9658 5.4148 18 6 6.3274 3.6044 -0.6537 19 6 4.2752 -0.0073 -0.0066 20 6 3.5803 -1.2013 -0.0015 21 6 4.3299 -2.5086 -0.0014 22 6 2.1976 -1.1978 0.0052 23 6 1.4423 -2.5017 0.0114 24 1 -0.3634 0.0045 1.0276 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3634 -0.8921 -0.5100 27 1 1.6573 2.1320 0.0005 28 1 6.0137 1.4116 -0.6946 29 1 5.8913 3.1156 1.8975 30 1 6.9021 1.6382 1.5788 31 1 8.2805 5.2547 0.3644 32 1 6.8482 5.0876 1.4078 33 1 9.1224 7.2345 3.3528 34 1 6.6785 3.5534 -1.6843 35 1 5.7296 4.4932 -0.4517 36 1 5.3552 -0.0105 -0.0119 37 1 4.5065 -2.8262 -1.0290 38 1 5.2848 -2.3799 0.5083 39 1 3.7407 -3.2652 0.5166 40 1 1.2647 -2.8138 1.0406 41 1 2.0279 -3.2634 -0.5035 42 1 0.4877 -2.3711 -0.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234388279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:05 Heat of formation + Delta-G solvation = 10.313570 kcal Electronic energy + Delta-G solvation = -20788.863961 eV Core-core repulsion = 17734.837423 eV Total energy + Delta-G solvation = -3054.026539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47357 -39.15591 -37.05085 -33.70587 -32.93269 -32.24144 -29.30553 -28.46083 -26.99660 -25.94092 -25.67496 -24.88628 -22.15193 -20.94633 -20.42905 -19.23033 -17.66547 -16.55615 -16.30239 -15.46267 -15.25859 -14.81622 -14.60788 -14.34250 -14.19460 -13.53585 -13.34595 -13.14339 -13.08934 -12.89575 -12.81063 -12.65362 -12.16649 -12.12123 -11.85400 -11.66943 -11.53214 -11.25790 -11.16061 -10.90781 -10.70399 -10.69422 -10.27263 -9.98809 -9.70622 -9.20904 -8.63177 -8.51903 -7.93193 -7.86093 -6.07101 -4.09520 1.31565 1.45264 3.31678 3.35397 3.36703 3.39924 3.68818 4.39713 4.63358 4.65616 4.76186 4.85940 4.93701 5.03318 5.07336 5.19486 5.28351 5.29039 5.31835 5.35758 5.46093 5.56380 5.64411 5.67876 5.72141 5.73536 5.77647 5.92354 6.03306 6.11655 6.16258 6.30274 6.36187 6.45163 6.49000 6.58397 6.65361 6.88310 7.17643 7.58049 7.66117 7.82540 8.05267 8.36492 8.96955 9.54964 11.04129 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026947 B = 0.003420 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.811729 B = 8186.176379 C = 8501.391937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.162 4.162 4 C 0.142 3.858 5 O -0.305 6.305 6 C 0.044 3.956 7 C 0.008 3.992 8 N -0.473 5.473 9 C 0.163 3.837 10 C -0.513 4.513 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.008 3.992 19 C -0.211 4.211 20 C -0.044 4.044 21 C -0.117 4.117 22 C -0.135 4.135 23 C -0.110 4.110 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.127 0.873 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.002 0.998 33 H 0.263 0.737 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.264 -16.309 -6.963 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.180 4.180 4 C 0.097 3.903 5 O -0.218 6.218 6 C -0.013 4.013 7 C -0.121 4.121 8 N -0.198 5.198 9 C 0.037 3.963 10 C -0.552 4.552 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.121 4.121 19 C -0.229 4.229 20 C -0.044 4.044 21 C -0.173 4.173 22 C -0.136 4.136 23 C -0.167 4.167 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.658 -16.162 -7.074 22.937 hybrid contribution 0.208 0.415 1.162 1.251 sum -14.450 -15.747 -5.911 22.175 Atomic orbital electron populations 1.20851 0.91114 1.02797 1.02433 1.19454 0.95666 0.91759 0.97898 1.20257 0.91066 0.98360 1.08335 1.19015 0.91668 0.85198 0.94468 1.86206 1.21231 1.27703 1.86627 1.24929 0.76491 1.00393 0.99466 1.24258 0.93271 0.99689 0.94901 1.68620 1.24297 1.18276 1.08624 1.20213 0.96003 0.86191 0.93862 1.21036 1.29810 0.93704 1.10625 0.92017 1.24992 0.96569 0.94899 0.98019 1.69943 1.45309 0.99220 1.39151 0.86530 0.80971 0.77562 0.82198 1.20089 1.21247 1.20214 1.24143 0.93083 0.95489 0.99405 1.21178 1.00441 0.91629 1.09699 1.19502 0.92917 0.94731 0.97245 1.20842 1.00015 0.94178 1.02303 1.19416 0.92912 0.94800 1.06442 1.20779 0.99705 0.94281 1.01888 0.91027 0.91521 0.91109 0.85480 0.88150 0.90429 0.89968 0.94695 0.98066 0.92743 0.89427 0.90764 0.85138 0.91102 0.91365 0.91279 0.91689 0.91776 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.60 36.00 0.35 -0.62 16 2 C -0.05 -0.56 5.88 -104.65 -0.62 -1.17 16 3 C -0.16 -2.20 9.64 -39.43 -0.38 -2.58 16 4 C 0.14 2.17 6.68 -39.22 -0.26 1.90 16 5 O -0.31 -5.19 10.16 -19.43 -0.20 -5.38 16 6 C 0.04 0.73 3.78 -25.80 -0.10 0.64 16 7 C 0.01 0.16 7.32 -2.64 -0.02 0.14 16 8 N -0.47 -10.42 6.25 -239.79 -1.50 -11.92 16 9 C 0.16 4.33 4.58 -4.98 -0.02 4.30 16 10 C -0.51 -14.65 8.84 -34.44 -0.30 -14.96 16 11 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 14 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.01 0.14 7.81 -2.76 -0.02 0.12 16 19 C -0.21 -2.92 8.66 -39.43 -0.34 -3.26 16 20 C -0.04 -0.53 5.88 -104.65 -0.62 -1.14 16 21 C -0.12 -1.07 9.19 36.00 0.33 -0.74 16 22 C -0.14 -1.53 5.88 -104.60 -0.62 -2.15 16 23 C -0.11 -0.89 8.79 36.00 0.32 -0.58 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 26 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 27 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.10 1.51 6.10 -51.93 -0.32 1.19 16 29 H 0.08 1.66 7.79 -51.93 -0.40 1.26 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.00 0.04 7.70 -51.93 -0.40 -0.36 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 34 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.41 7.80 -51.93 -0.40 1.00 16 36 H 0.13 1.74 5.97 -52.49 -0.31 1.43 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 39 H 0.07 0.54 6.69 -51.93 -0.35 0.19 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 42 H 0.07 0.46 5.93 -51.93 -0.31 0.15 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -31.07 338.34 -9.78 -40.85 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.49 Total: -0.74 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -2.40 Total: -18.55 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.76 Total: -38.07 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.20 Total: -5.38 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.07 -9.78 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234388279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.160 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds