Wall clock time and date at job start Mon Mar 30 2020 02:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38142 * 119.97212 * 2 1 4 4 C 1.38729 * 119.94601 * 180.02562 * 3 2 1 5 5 O 1.35904 * 120.05805 * 179.97438 * 4 3 2 6 6 C 1.42901 * 116.99740 * 184.03827 * 5 4 3 7 7 H 1.08998 * 110.89309 * 38.10783 * 6 5 4 8 8 C 1.55165 * 111.03217 * 162.01107 * 6 5 4 9 9 C 1.54339 * 103.01795 * 153.39241 * 8 6 5 10 10 N 1.47019 * 107.26713 * 338.13989 * 9 8 6 11 11 C 1.36940 * 125.64753 * 178.84958 * 10 9 8 12 12 H 1.08000 * 119.99540 * 188.38216 * 11 10 9 13 13 C 1.38806 * 119.99993 * 8.38890 * 11 10 9 14 14 N 1.31618 * 120.00050 * 193.13709 * 13 11 10 15 15 Si 1.86799 * 120.00251 * 13.13018 * 13 11 10 16 16 H 1.48502 * 109.47184 * 174.21530 * 15 13 11 17 17 H 1.48508 * 109.46818 * 54.21603 * 15 13 11 18 18 H 1.48502 * 109.47220 * 294.21566 * 15 13 11 19 19 C 1.47426 * 108.70490 * 358.58392 * 10 9 8 20 20 C 1.38738 * 119.88896 * 0.27305 * 4 3 2 21 21 C 1.38149 * 119.94154 * 359.46805 * 20 4 3 22 22 C 1.50693 * 119.97419 * 180.23256 * 21 20 4 23 23 C 1.38268 * 119.97184 * 180.02562 * 2 1 3 24 24 C 1.50698 * 119.94823 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.46952 * 90.00504 * 1 2 3 26 26 H 1.09005 * 109.47482 * 210.00309 * 1 2 3 27 27 H 1.08995 * 109.47298 * 330.00220 * 1 2 3 28 28 H 1.08002 * 120.02593 * 359.97438 * 3 2 1 29 29 H 1.08994 * 110.71827 * 271.94857 * 8 6 5 30 30 H 1.08992 * 110.72063 * 35.22800 * 8 6 5 31 31 H 1.08998 * 109.99274 * 218.66022 * 9 8 6 32 32 H 1.09001 * 109.77728 * 97.49375 * 9 8 6 33 33 H 0.96997 * 119.99837 * 5.03654 * 14 13 11 34 34 H 1.08995 * 110.36753 * 143.19424 * 19 10 9 35 35 H 1.08999 * 110.36905 * 265.41060 * 19 10 9 36 36 H 1.08001 * 120.02914 * 179.72364 * 20 4 3 37 37 H 1.09001 * 109.47553 * 270.28263 * 22 21 20 38 38 H 1.09001 * 109.46886 * 30.28017 * 22 21 20 39 39 H 1.08994 * 109.47487 * 150.27712 * 22 21 20 40 40 H 1.08994 * 109.47354 * 89.99558 * 24 23 2 41 41 H 1.08995 * 109.47544 * 210.00286 * 24 23 2 42 42 H 1.09010 * 109.46773 * 330.00291 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1967 0.0000 4 6 3.5844 1.1960 -0.0005 5 8 4.2656 2.3720 -0.0011 6 6 5.6898 2.2966 -0.0913 7 1 5.9947 1.4985 -0.7681 8 6 6.2929 3.6576 -0.5289 9 6 7.7133 3.6183 0.0735 10 7 7.6926 2.6470 1.1770 11 6 8.7640 2.3023 1.9570 12 1 8.6826 1.4813 2.6539 13 6 9.9546 3.0080 1.8519 14 7 11.0532 2.5302 2.3970 15 14 9.9979 4.6359 0.9367 16 1 11.3405 5.2524 1.0864 17 1 8.9691 5.5474 1.4991 18 1 9.7182 4.4020 -0.5029 19 6 6.3257 2.1105 1.3090 20 6 4.2752 -0.0071 -0.0068 21 6 3.5804 -1.2012 -0.0014 22 6 4.3300 -2.5084 -0.0029 23 6 2.1977 -1.1978 -0.0005 24 6 1.4424 -2.5018 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6570 2.1320 -0.0004 29 1 6.3342 3.7295 -1.6157 30 1 5.7223 4.4854 -0.1080 31 1 7.9851 4.6037 0.4519 32 1 8.4275 3.3008 -0.6863 33 1 11.0481 1.6518 2.8084 34 1 6.3570 1.0537 1.5740 35 1 5.7683 2.6725 2.0584 36 1 5.3552 -0.0102 -0.0117 37 1 4.5101 -2.8229 -1.0309 38 1 5.2832 -2.3812 0.5104 39 1 3.7392 -3.2667 0.5108 40 1 1.2598 -2.8160 -1.0281 41 1 2.0305 -3.2624 0.5129 42 1 0.4903 -2.3702 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234389456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:50 Heat of formation + Delta-G solvation = 12.670786 kcal Electronic energy + Delta-G solvation = -21361.629519 eV Core-core repulsion = 18307.705197 eV Total energy + Delta-G solvation = -3053.924322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38163 -38.61649 -36.67770 -33.68250 -32.76618 -32.07512 -29.65479 -28.63026 -28.26428 -26.69709 -25.83173 -23.91501 -21.67748 -20.95585 -20.59286 -19.86434 -17.64459 -17.54217 -16.36644 -15.59113 -15.38421 -14.82319 -14.72479 -14.14889 -13.87509 -13.62897 -13.51929 -13.33290 -13.07640 -12.95838 -12.71164 -12.50201 -12.40825 -12.21408 -12.09917 -11.59333 -11.50314 -11.27590 -11.11127 -11.10586 -10.90086 -10.45835 -10.14841 -9.93677 -9.34099 -9.01754 -8.82180 -8.59969 -7.89144 -7.07944 -6.34019 -3.26232 1.34040 1.47430 3.30819 3.38527 3.47141 3.69783 3.71337 4.59148 4.67810 4.72948 4.91201 4.93806 5.01648 5.05394 5.09482 5.21320 5.27934 5.33512 5.35332 5.39100 5.46318 5.47590 5.61131 5.65971 5.69390 5.73795 5.76759 5.83464 5.90538 5.96813 6.11210 6.19272 6.28182 6.38138 6.41429 6.52015 6.54313 6.67483 6.69227 6.91023 7.55771 7.67120 8.29274 9.00398 9.50396 10.16427 11.17005 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.004213 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.037459 B = 6644.001195 C = 7297.216812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.161 4.161 4 C 0.142 3.858 5 O -0.305 6.305 6 C 0.067 3.933 7 H 0.083 0.917 8 C -0.119 4.119 9 C 0.102 3.898 10 N -0.610 5.610 11 C -0.323 4.323 12 H 0.080 0.920 13 C -0.022 4.022 14 N -0.928 5.928 15 Si 1.073 2.927 16 H -0.300 1.300 17 H -0.297 1.297 18 H -0.285 1.285 19 C 0.119 3.881 20 C -0.209 4.209 21 C -0.043 4.043 22 C -0.120 4.120 23 C -0.135 4.135 24 C -0.112 4.112 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.280 -7.005 -7.853 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.180 4.180 4 C 0.096 3.904 5 O -0.218 6.218 6 C 0.010 3.990 7 H 0.101 0.899 8 C -0.156 4.156 9 C -0.022 4.022 10 N -0.339 5.339 11 C -0.450 4.450 12 H 0.098 0.902 13 C -0.221 4.221 14 N -0.569 5.569 15 Si 0.907 3.093 16 H -0.229 1.229 17 H -0.226 1.226 18 H -0.213 1.213 19 C -0.007 4.007 20 C -0.228 4.228 21 C -0.043 4.043 22 C -0.176 4.176 23 C -0.135 4.135 24 C -0.168 4.168 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.150 0.850 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.280 -5.577 -8.176 21.672 hybrid contribution -0.788 -1.303 0.505 1.604 sum -20.069 -6.880 -7.671 22.559 Atomic orbital electron populations 1.20841 0.91113 1.02845 1.02308 1.19431 0.95628 0.91738 0.98096 1.20199 0.90893 0.98313 1.08566 1.18976 0.91605 0.85004 0.94807 1.86069 1.20482 1.27729 1.87510 1.23759 0.76700 0.99425 0.99124 0.89897 1.22631 0.96325 0.95958 1.00732 1.22136 0.94586 0.94178 0.91337 1.44693 1.05205 1.47990 1.36028 1.20195 0.89595 1.15811 1.19390 0.90238 1.25838 0.91073 1.04464 1.00709 1.70892 1.26747 1.19673 1.39637 0.83830 0.73530 0.76103 0.75867 1.22869 1.22553 1.21274 1.21977 0.87051 0.98212 0.93510 1.21274 1.00672 0.91645 1.09165 1.19509 0.92903 0.94786 0.97067 1.20891 1.00128 0.94174 1.02401 1.19419 0.92910 0.94827 1.06341 1.20814 0.99718 0.94375 1.01866 0.91124 0.91084 0.91546 0.85526 0.90420 0.90195 0.94247 0.92873 0.92837 0.93290 0.94797 0.84980 0.91047 0.91310 0.91081 0.91711 0.91542 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.60 36.00 0.35 -0.63 16 2 C -0.05 -0.58 5.88 -104.65 -0.62 -1.20 16 3 C -0.16 -2.20 9.64 -39.44 -0.38 -2.58 16 4 C 0.14 2.22 6.64 -39.22 -0.26 1.96 16 5 O -0.31 -5.20 9.96 -19.44 -0.19 -5.39 16 6 C 0.07 1.19 2.82 -24.58 -0.07 1.12 16 7 H 0.08 1.41 6.51 -51.93 -0.34 1.07 16 8 C -0.12 -2.07 6.69 -24.88 -0.17 -2.24 16 9 C 0.10 2.24 4.64 -3.06 -0.01 2.23 16 10 N -0.61 -15.28 3.35 -170.06 -0.57 -15.85 16 11 C -0.32 -9.39 10.58 -15.06 -0.16 -9.55 16 12 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 13 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 14 N -0.93 -29.36 13.70 55.49 0.76 -28.60 16 15 Si 1.07 26.93 24.50 -169.99 -4.16 22.77 16 16 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 17 H -0.30 -7.19 6.61 56.52 0.37 -6.82 16 18 H -0.29 -6.48 5.44 56.52 0.31 -6.17 16 19 C 0.12 2.52 6.63 -2.52 -0.02 2.50 16 20 C -0.21 -3.16 8.41 -39.43 -0.33 -3.49 16 21 C -0.04 -0.56 5.88 -104.65 -0.62 -1.17 16 22 C -0.12 -1.27 9.60 36.00 0.35 -0.93 16 23 C -0.13 -1.60 5.88 -104.60 -0.62 -2.22 16 24 C -0.11 -0.97 9.19 36.00 0.33 -0.64 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.51 5.94 -51.93 -0.31 0.21 16 27 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.04 0.91 3.90 -51.93 -0.20 0.71 16 32 H 0.05 1.19 6.39 -51.93 -0.33 0.86 16 33 H 0.26 8.17 8.73 -40.82 -0.36 7.82 16 34 H 0.05 1.03 7.38 -51.93 -0.38 0.65 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.13 2.07 5.39 -52.49 -0.28 1.79 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.07 0.64 5.94 -51.93 -0.31 0.33 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.53 5.94 -51.93 -0.31 0.22 16 42 H 0.07 0.49 5.94 -51.92 -0.31 0.18 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -32.34 321.45 -7.91 -40.25 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.27 Total: -0.47 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.32 Total: -17.56 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.19 Total: -44.45 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.19 Total: -5.39 kcal Atomic # 14 Polarization: 26.93 SS G_CDS: -4.16 Total: 22.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.34 -7.91 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234389456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.924 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds