Wall clock time and date at job start Mon Mar 30 2020 02:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38142 * 119.97212 * 2 1 4 4 C 1.38729 * 119.94601 * 180.02562 * 3 2 1 5 5 O 1.35904 * 120.05805 * 179.97438 * 4 3 2 6 6 C 1.42901 * 116.99740 * 184.03827 * 5 4 3 7 7 H 1.08998 * 110.89309 * 38.10783 * 6 5 4 8 8 C 1.55165 * 111.03217 * 162.01107 * 6 5 4 9 9 C 1.54339 * 103.01795 * 153.39241 * 8 6 5 10 10 N 1.47019 * 107.26713 * 338.13989 * 9 8 6 11 11 C 1.36940 * 125.64753 * 178.84958 * 10 9 8 12 12 H 1.08000 * 119.99540 * 188.38216 * 11 10 9 13 13 C 1.38806 * 119.99993 * 8.38890 * 11 10 9 14 14 N 1.31618 * 120.00050 * 193.13709 * 13 11 10 15 15 Si 1.86799 * 120.00251 * 13.13018 * 13 11 10 16 16 H 1.48502 * 109.47184 * 174.21530 * 15 13 11 17 17 H 1.48508 * 109.46818 * 54.21603 * 15 13 11 18 18 H 1.48502 * 109.47220 * 294.21566 * 15 13 11 19 19 C 1.47426 * 108.70490 * 358.58392 * 10 9 8 20 20 C 1.38738 * 119.88896 * 0.27305 * 4 3 2 21 21 C 1.38149 * 119.94154 * 359.46805 * 20 4 3 22 22 C 1.50693 * 119.97419 * 180.23256 * 21 20 4 23 23 C 1.38268 * 119.97184 * 180.02562 * 2 1 3 24 24 C 1.50698 * 119.94823 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.46952 * 90.00504 * 1 2 3 26 26 H 1.09005 * 109.47482 * 210.00309 * 1 2 3 27 27 H 1.08995 * 109.47298 * 330.00220 * 1 2 3 28 28 H 1.08002 * 120.02593 * 359.97438 * 3 2 1 29 29 H 1.08994 * 110.71827 * 271.94857 * 8 6 5 30 30 H 1.08992 * 110.72063 * 35.22800 * 8 6 5 31 31 H 1.08998 * 109.99274 * 218.66022 * 9 8 6 32 32 H 1.09001 * 109.77728 * 97.49375 * 9 8 6 33 33 H 0.96997 * 119.99837 * 5.03654 * 14 13 11 34 34 H 1.08995 * 110.36753 * 143.19424 * 19 10 9 35 35 H 1.08999 * 110.36905 * 265.41060 * 19 10 9 36 36 H 1.08001 * 120.02914 * 179.72364 * 20 4 3 37 37 H 1.09001 * 109.47553 * 270.28263 * 22 21 20 38 38 H 1.09001 * 109.46886 * 30.28017 * 22 21 20 39 39 H 1.08994 * 109.47487 * 150.27712 * 22 21 20 40 40 H 1.08994 * 109.47354 * 89.99558 * 24 23 2 41 41 H 1.08995 * 109.47544 * 210.00286 * 24 23 2 42 42 H 1.09010 * 109.46773 * 330.00291 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1967 0.0000 4 6 3.5844 1.1960 -0.0005 5 8 4.2656 2.3720 -0.0011 6 6 5.6898 2.2966 -0.0913 7 1 5.9947 1.4985 -0.7681 8 6 6.2929 3.6576 -0.5289 9 6 7.7133 3.6183 0.0735 10 7 7.6926 2.6470 1.1770 11 6 8.7640 2.3023 1.9570 12 1 8.6826 1.4813 2.6539 13 6 9.9546 3.0080 1.8519 14 7 11.0532 2.5302 2.3970 15 14 9.9979 4.6359 0.9367 16 1 11.3405 5.2524 1.0864 17 1 8.9691 5.5474 1.4991 18 1 9.7182 4.4020 -0.5029 19 6 6.3257 2.1105 1.3090 20 6 4.2752 -0.0071 -0.0068 21 6 3.5804 -1.2012 -0.0014 22 6 4.3300 -2.5084 -0.0029 23 6 2.1977 -1.1978 -0.0005 24 6 1.4424 -2.5018 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6570 2.1320 -0.0004 29 1 6.3342 3.7295 -1.6157 30 1 5.7223 4.4854 -0.1080 31 1 7.9851 4.6037 0.4519 32 1 8.4275 3.3008 -0.6863 33 1 11.0481 1.6518 2.8084 34 1 6.3570 1.0537 1.5740 35 1 5.7683 2.6725 2.0584 36 1 5.3552 -0.0102 -0.0117 37 1 4.5101 -2.8229 -1.0309 38 1 5.2832 -2.3812 0.5104 39 1 3.7392 -3.2667 0.5108 40 1 1.2598 -2.8160 -1.0281 41 1 2.0305 -3.2624 0.5129 42 1 0.4903 -2.3702 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234389456.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:49 Heat of formation + Delta-G solvation = -6.983246 kcal Electronic energy + Delta-G solvation = -21362.481782 eV Core-core repulsion = 18307.705197 eV Total energy + Delta-G solvation = -3054.776585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53066 -39.90146 -38.21178 -34.75318 -34.53342 -33.29494 -31.44915 -30.09027 -29.20113 -27.72436 -26.81300 -25.76887 -23.05209 -22.55386 -21.81934 -21.10762 -19.68098 -18.84777 -17.60812 -17.11816 -16.65668 -16.10116 -16.06060 -15.54469 -15.26187 -15.15224 -14.73371 -14.36758 -14.19774 -14.05528 -13.90863 -13.73392 -13.64861 -13.31352 -13.18091 -13.12855 -13.05837 -12.42384 -12.33426 -12.26738 -12.04036 -11.79549 -11.56426 -11.47784 -11.36534 -11.10001 -10.80818 -9.59408 -9.19479 -8.95237 -8.71662 -5.55986 0.32750 0.44138 1.37899 1.48547 1.69883 2.04238 2.51815 2.69411 3.09707 3.23335 3.44721 3.68082 3.79430 3.80085 3.87385 4.04167 4.14618 4.21117 4.27430 4.29868 4.46956 4.56197 4.60837 4.65814 4.69229 4.75575 4.75798 4.78837 4.82789 4.89963 4.95522 5.02861 5.05511 5.07350 5.24338 5.32741 5.41545 5.42754 5.52619 5.74990 5.93527 6.01394 6.42969 6.73846 7.32146 7.97853 8.81174 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.004213 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.037459 B = 6644.001195 C = 7297.216812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.170 4.170 4 C 0.112 3.888 5 O -0.310 6.310 6 C 0.084 3.916 7 H 0.089 0.911 8 C -0.107 4.107 9 C 0.091 3.909 10 N -0.630 5.630 11 C -0.318 4.318 12 H 0.045 0.955 13 C -0.077 4.077 14 N -0.961 5.961 15 Si 1.110 2.890 16 H -0.310 1.310 17 H -0.283 1.283 18 H -0.243 1.243 19 C 0.117 3.883 20 C -0.229 4.229 21 C -0.055 4.055 22 C -0.118 4.118 23 C -0.135 4.135 24 C -0.111 4.111 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.248 0.752 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.380 -6.910 -9.911 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.050 4.050 3 C -0.188 4.188 4 C 0.067 3.933 5 O -0.223 6.223 6 C 0.027 3.973 7 H 0.106 0.894 8 C -0.144 4.144 9 C -0.032 4.032 10 N -0.359 5.359 11 C -0.446 4.446 12 H 0.063 0.937 13 C -0.269 4.269 14 N -0.605 5.605 15 Si 0.937 3.063 16 H -0.239 1.239 17 H -0.211 1.211 18 H -0.168 1.168 19 C -0.008 4.008 20 C -0.247 4.247 21 C -0.055 4.055 22 C -0.174 4.174 23 C -0.136 4.136 24 C -0.167 4.167 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.133 0.867 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.441 -5.507 -10.253 25.279 hybrid contribution 0.036 -1.504 1.231 1.944 sum -22.405 -7.011 -9.022 25.150 Atomic orbital electron populations 1.20927 0.88335 1.04060 1.03593 1.19897 0.97617 0.91035 0.96440 1.20474 0.90145 0.99688 1.08515 1.19264 0.92456 0.84618 0.96916 1.86038 1.19515 1.28635 1.88119 1.23429 0.77443 1.00086 0.96372 0.89351 1.22626 0.93244 0.95802 1.02776 1.22322 0.97734 0.92942 0.90240 1.44731 1.05552 1.49094 1.36529 1.20075 0.91224 1.14418 1.18908 0.93723 1.27225 0.90626 1.07512 1.01567 1.71000 1.28148 1.19434 1.41912 0.83424 0.73386 0.72085 0.77395 1.23882 1.21058 1.16768 1.22044 0.85620 0.97137 0.96047 1.21271 1.00028 0.92648 1.10781 1.19844 0.93942 0.94944 0.96793 1.20931 0.99585 0.93634 1.03278 1.19878 0.92597 0.96526 1.04555 1.20900 1.00102 0.92587 1.03109 0.89621 0.89436 0.90844 0.84491 0.86688 0.88966 0.94310 0.92954 0.94350 0.94386 0.95626 0.86652 0.89840 0.92618 0.89055 0.90301 0.90814 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.60 71.23 0.68 -0.82 16 2 C -0.05 -1.06 5.88 -19.88 -0.12 -1.18 16 3 C -0.17 -4.40 9.64 22.36 0.22 -4.18 16 4 C 0.11 3.47 6.64 22.51 0.15 3.62 16 5 O -0.31 -10.29 9.96 -92.47 -0.92 -11.21 16 6 C 0.08 2.92 2.82 31.99 0.09 3.01 16 7 H 0.09 2.97 6.51 -2.39 -0.02 2.95 16 8 C -0.11 -3.44 6.69 31.79 0.21 -3.22 16 9 C 0.09 3.84 4.64 86.73 0.40 4.24 16 10 N -0.63 -31.84 3.35 -691.96 -2.32 -34.15 16 11 C -0.32 -19.15 10.58 84.03 0.89 -18.26 16 12 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 13 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 14 N -0.96 -62.97 13.70 21.65 0.30 -62.68 16 15 Si 1.11 53.88 24.50 68.60 1.68 55.56 16 16 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 17 H -0.28 -12.98 6.61 99.48 0.66 -12.32 16 18 H -0.24 -10.12 5.44 99.48 0.54 -9.58 16 19 C 0.12 5.07 6.63 86.86 0.58 5.65 16 20 C -0.23 -6.96 8.41 22.37 0.19 -6.77 16 21 C -0.06 -1.40 5.88 -19.88 -0.12 -1.51 16 22 C -0.12 -2.39 9.60 71.23 0.68 -1.71 16 23 C -0.14 -2.91 5.88 -19.85 -0.12 -3.03 16 24 C -0.11 -1.53 9.19 71.24 0.65 -0.87 16 25 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.09 0.89 5.94 -2.38 -0.01 0.88 16 27 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 28 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 30 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 31 H 0.04 1.68 3.90 -2.39 -0.01 1.67 16 32 H 0.05 2.21 6.39 -2.39 -0.02 2.19 16 33 H 0.25 16.31 8.73 -92.71 -0.81 15.50 16 34 H 0.04 1.68 7.38 -2.39 -0.02 1.67 16 35 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.12 3.79 5.39 -2.91 -0.02 3.77 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.05 1.25 8.09 -2.39 -0.02 1.24 16 39 H 0.09 1.44 5.94 -2.39 -0.01 1.43 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.92 5.94 -2.39 -0.01 0.91 16 42 H 0.08 0.88 5.94 -2.38 -0.01 0.86 16 Total: -1.00 -72.75 321.45 4.37 -68.38 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.76 Total: 13.36 kcal Atomic # 6 Polarization: -34.12 SS G_CDS: 4.86 Total: -29.26 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -2.02 Total: -96.83 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.92 Total: -11.21 kcal Atomic # 14 Polarization: 53.88 SS G_CDS: 1.68 Total: 55.56 kcal Total: -72.75 4.37 -68.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234389456.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.395 kcal (2) G-P(sol) polarization free energy of solvation -72.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds