Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38146 * 119.97185 * 2 1 4 4 C 1.38729 * 119.94655 * 179.97438 * 3 2 1 5 5 O 1.35898 * 120.05688 * 179.97438 * 4 3 2 6 6 C 1.42900 * 116.99989 * 354.68357 * 5 4 3 7 7 H 1.08995 * 110.88973 * 321.83701 * 6 5 4 8 8 C 1.55158 * 111.00643 * 197.95781 * 6 5 4 9 9 C 1.54368 * 102.92050 * 206.45565 * 8 6 5 10 10 N 1.47025 * 107.29232 * 22.13910 * 9 8 6 11 11 C 1.36926 * 125.64979 * 181.06120 * 10 9 8 12 12 H 1.08007 * 119.99914 * 180.02562 * 11 10 9 13 13 C 1.38818 * 120.00462 * 0.03665 * 11 10 9 14 14 N 1.31618 * 119.99294 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00260 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46923 * 89.99984 * 15 13 11 17 17 H 1.48500 * 109.46908 * 209.99618 * 15 13 11 18 18 H 1.48497 * 109.47252 * 330.00252 * 15 13 11 19 19 C 1.47426 * 108.69811 * 1.08999 * 10 9 8 20 20 C 1.38732 * 119.88839 * 0.27535 * 4 3 2 21 21 C 1.38143 * 119.94144 * 359.47154 * 20 4 3 22 22 C 1.50699 * 119.97318 * 180.27554 * 21 20 4 23 23 C 1.38265 * 119.97573 * 179.97438 * 2 1 3 24 24 C 1.50696 * 119.94253 * 0.02562 * 23 2 1 25 25 H 1.08992 * 109.47023 * 90.00356 * 1 2 3 26 26 H 1.09002 * 109.46632 * 210.00296 * 1 2 3 27 27 H 1.09000 * 109.47254 * 330.00008 * 1 2 3 28 28 H 1.08006 * 120.02620 * 359.95740 * 3 2 1 29 29 H 1.09007 * 110.71713 * 324.78638 * 8 6 5 30 30 H 1.08990 * 110.72349 * 88.06116 * 8 6 5 31 31 H 1.08998 * 109.84472 * 262.72587 * 9 8 6 32 32 H 1.09006 * 109.90399 * 141.57521 * 9 8 6 33 33 H 0.97006 * 119.99258 * 179.97438 * 14 13 11 34 34 H 1.09005 * 110.36764 * 217.03271 * 19 10 9 35 35 H 1.09001 * 110.45796 * 94.76268 * 19 10 9 36 36 H 1.07997 * 120.03076 * 179.71803 * 20 4 3 37 37 H 1.09001 * 109.47238 * 270.23005 * 22 21 20 38 38 H 1.09003 * 109.47156 * 30.22739 * 22 21 20 39 39 H 1.09004 * 109.47319 * 150.23010 * 22 21 20 40 40 H 1.09005 * 109.47443 * 89.99425 * 24 23 2 41 41 H 1.09003 * 109.47270 * 209.99311 * 24 23 2 42 42 H 1.09000 * 109.47201 * 329.99676 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1967 0.0000 4 6 3.5845 1.1961 0.0005 5 8 4.2656 2.3720 0.0000 6 6 3.4938 3.5688 -0.1191 7 1 2.6639 3.4287 -0.8116 8 6 4.3838 4.7637 -0.5521 9 6 3.6275 5.9822 0.0192 10 7 2.7764 5.4941 1.1142 11 6 1.9288 6.2606 1.8685 12 1 1.3438 5.8053 2.6540 13 6 1.8211 7.6228 1.6236 14 7 2.5343 8.1775 0.6666 15 14 0.6653 8.6684 2.6531 16 1 1.3931 9.1911 3.8374 17 1 0.1667 9.8047 1.8373 18 1 -0.4826 7.8408 3.1032 19 6 2.9874 4.0430 1.2660 20 6 4.2752 -0.0070 -0.0047 21 6 3.5805 -1.2010 0.0006 22 6 4.3302 -2.5083 0.0012 23 6 2.1978 -1.1977 0.0005 24 6 1.4425 -2.5017 0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6571 2.1321 -0.0007 29 1 5.3771 4.6848 -0.1102 30 1 4.4474 4.8234 -1.6385 31 1 3.0099 6.4321 -0.7581 32 1 4.3387 6.7148 0.4009 33 1 2.4588 9.1294 0.4952 34 1 2.0494 3.5475 1.5170 35 1 3.7369 3.8450 2.0322 36 1 5.3552 -0.0101 -0.0089 37 1 4.5110 -2.8239 -1.0263 38 1 5.2830 -2.3805 0.5150 39 1 3.7389 -3.2660 0.5153 40 1 1.2607 -2.8163 -1.0272 41 1 2.0303 -3.2621 0.5147 42 1 0.4901 -2.3699 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234389457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = -14.022794 kcal Electronic energy + Delta-G solvation = -21275.220358 eV Core-core repulsion = 18220.138515 eV Total energy + Delta-G solvation = -3055.081843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45645 -39.73603 -37.95435 -34.59736 -34.37263 -33.16329 -31.19110 -29.49251 -29.08584 -27.59244 -26.89272 -26.19563 -22.79371 -22.24179 -21.68338 -21.02058 -19.02771 -18.74792 -17.31356 -16.83937 -16.49091 -16.25231 -15.77190 -15.57773 -15.11892 -14.68066 -14.53616 -14.20701 -14.04298 -14.02571 -13.83497 -13.61892 -13.49036 -13.14638 -13.06997 -12.94731 -12.73784 -12.34762 -12.26614 -12.19736 -12.06269 -11.98673 -11.87011 -11.76758 -11.46962 -11.28110 -10.76530 -9.55606 -9.02003 -8.89940 -7.90677 -5.28622 0.36642 0.48203 1.44770 1.47125 1.55929 2.12393 2.47868 2.73677 3.28214 3.57673 3.63152 3.85186 3.86060 3.89140 3.96791 4.11333 4.20883 4.31481 4.36789 4.52079 4.61315 4.65403 4.70231 4.75104 4.79745 4.81634 4.83362 4.90114 4.94664 5.01033 5.06765 5.09144 5.27650 5.36427 5.37315 5.46699 5.53743 5.56588 5.65602 5.78413 5.98173 6.11172 6.49639 7.02559 7.66778 8.31217 9.19840 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027124 B = 0.004054 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.040524 B = 6905.382668 C = 7634.007247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.054 4.054 3 C -0.227 4.227 4 C 0.112 3.888 5 O -0.315 6.315 6 C 0.087 3.913 7 H 0.082 0.918 8 C -0.122 4.122 9 C 0.187 3.813 10 N -0.623 5.623 11 C -0.251 4.251 12 H 0.082 0.918 13 C -0.061 4.061 14 N -0.949 5.949 15 Si 0.983 3.017 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.268 1.268 19 C 0.120 3.880 20 C -0.172 4.172 21 C -0.050 4.050 22 C -0.113 4.113 23 C -0.136 4.136 24 C -0.110 4.110 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.250 0.750 34 H 0.045 0.955 35 H 0.021 0.979 36 H 0.134 0.866 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -22.454 -3.582 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.054 4.054 3 C -0.246 4.246 4 C 0.067 3.933 5 O -0.228 6.228 6 C 0.029 3.971 7 H 0.100 0.900 8 C -0.160 4.160 9 C 0.062 3.938 10 N -0.351 5.351 11 C -0.380 4.380 12 H 0.100 0.900 13 C -0.254 4.254 14 N -0.597 5.597 15 Si 0.811 3.189 16 H -0.212 1.212 17 H -0.217 1.217 18 H -0.193 1.193 19 C -0.006 4.006 20 C -0.191 4.191 21 C -0.050 4.050 22 C -0.169 4.169 23 C -0.136 4.136 24 C -0.166 4.166 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.152 0.848 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.157 -22.219 -3.555 22.503 hybrid contribution -0.510 1.591 0.511 1.747 sum -0.668 -20.628 -3.044 20.862 Atomic orbital electron populations 1.20935 0.89610 1.03575 1.03249 1.19856 0.97169 0.91692 0.96685 1.21288 0.93188 0.99469 1.10654 1.19306 0.91091 0.86125 0.96809 1.86044 1.36280 1.12578 1.87885 1.23413 0.94261 0.82388 0.97002 0.89975 1.22861 0.98941 0.92313 1.01871 1.20959 0.91520 0.92020 0.89291 1.44619 1.48649 1.03036 1.38767 1.19446 1.16514 0.90321 1.11672 0.90027 1.25695 1.01768 0.97755 1.00184 1.70160 1.44605 1.10830 1.34143 0.85018 0.78386 0.78054 0.77481 1.21191 1.21651 1.19280 1.22013 0.98039 0.85171 0.95369 1.20472 1.00548 0.89312 1.08760 1.19891 0.93363 0.95261 0.96528 1.20923 0.99954 0.92463 1.03530 1.19873 0.93293 0.95805 1.04629 1.20896 1.00006 0.92654 1.03065 0.89990 0.88968 0.92299 0.86549 0.90334 0.88726 0.95751 0.96431 0.94065 0.93676 0.96074 0.84775 0.89734 0.90933 0.89313 0.90402 0.89949 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.60 71.24 0.68 -1.69 16 2 C -0.05 -1.40 5.88 -19.88 -0.12 -1.51 16 3 C -0.23 -7.21 8.38 22.37 0.19 -7.02 16 4 C 0.11 3.68 6.64 22.51 0.15 3.83 16 5 O -0.31 -11.52 9.96 -92.40 -0.92 -12.44 16 6 C 0.09 3.36 2.82 31.99 0.09 3.45 16 7 H 0.08 3.13 6.60 -2.39 -0.02 3.11 16 8 C -0.12 -4.81 6.69 31.80 0.21 -4.60 16 9 C 0.19 9.53 5.37 86.74 0.47 9.99 16 10 N -0.62 -33.53 3.39 -691.87 -2.35 -35.88 16 11 C -0.25 -14.48 10.28 84.04 0.86 -13.61 16 12 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 13 C -0.06 -3.49 5.49 84.86 0.47 -3.03 16 14 N -0.95 -57.34 10.31 21.65 0.22 -57.11 16 15 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C 0.12 5.40 6.61 86.86 0.57 5.98 16 20 C -0.17 -4.78 9.64 22.37 0.22 -4.56 16 21 C -0.05 -1.13 5.88 -19.88 -0.12 -1.25 16 22 C -0.11 -1.61 9.60 71.24 0.68 -0.93 16 23 C -0.14 -3.01 5.88 -19.85 -0.12 -3.13 16 24 C -0.11 -1.55 9.19 71.23 0.65 -0.90 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.43 5.94 -2.39 -0.01 1.41 16 27 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 28 H 0.12 3.97 5.32 -2.91 -0.02 3.95 16 29 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.02 1.35 7.38 -2.39 -0.02 1.33 16 32 H 0.02 0.99 7.51 -2.38 -0.02 0.97 16 33 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 34 H 0.04 1.98 7.27 -2.38 -0.02 1.96 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 39 H 0.09 0.96 5.94 -2.38 -0.01 0.94 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.08 0.90 5.94 -2.39 -0.01 0.88 16 42 H 0.07 0.94 5.94 -2.39 -0.01 0.92 16 Total: -1.00 -67.76 329.53 4.89 -62.87 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.01 Total: 13.45 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 4.90 Total: -18.95 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -2.13 Total: -92.99 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.92 Total: -12.44 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -67.76 4.89 -62.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234389457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.851 kcal (2) G-P(sol) polarization free energy of solvation -67.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds