Wall clock time and date at job start Mon Mar 30 2020 01:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47072 * 270.00034 * 3 2 1 5 5 H 1.48508 * 109.47218 * 30.00009 * 3 2 1 6 6 H 1.48498 * 109.47322 * 149.99857 * 3 2 1 7 7 C 1.39945 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00200 * 163.56328 * 7 2 1 9 9 C 1.41396 * 119.99602 * 343.56449 * 7 2 1 10 10 C 1.40734 * 120.24764 * 334.14235 * 9 7 2 11 11 C 1.37595 * 119.74759 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.24978 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.49712 * 0.02562 * 12 11 10 14 14 C 1.37631 * 120.25030 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.12800 * 179.97438 * 14 13 12 16 16 N 1.46898 * 109.47036 * 260.01705 * 15 14 13 17 17 C 1.46853 * 111.00073 * 45.78588 * 16 15 14 18 18 C 1.53037 * 109.52614 * 185.83906 * 17 16 15 19 19 C 1.53120 * 109.27818 * 300.82356 * 18 17 16 20 20 C 1.53119 * 109.16356 * 57.65035 * 19 18 17 21 21 H 1.09007 * 109.50255 * 62.28561 * 20 19 18 22 22 C 1.53000 * 109.54145 * 182.38341 * 20 19 18 23 23 O 1.42894 * 109.47032 * 294.82794 * 22 20 19 24 24 C 1.46847 * 111.00210 * 169.99418 * 16 15 14 25 25 H 0.97001 * 119.99960 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.12381 * 0.04252 * 10 9 7 27 27 H 1.08003 * 119.87563 * 179.72310 * 11 10 9 28 28 H 1.08000 * 119.74545 * 179.97438 * 12 11 10 29 29 H 1.07997 * 119.86869 * 179.97438 * 13 12 11 30 30 H 1.08998 * 109.47206 * 20.01589 * 15 14 13 31 31 H 1.08997 * 109.47177 * 140.01482 * 15 14 13 32 32 H 1.08993 * 109.46213 * 305.85970 * 17 16 15 33 33 H 1.09007 * 109.46055 * 65.82332 * 17 16 15 34 34 H 1.08993 * 109.50347 * 180.88503 * 18 17 16 35 35 H 1.08999 * 109.49869 * 60.76028 * 18 17 16 36 36 H 1.09001 * 109.52295 * 297.74953 * 19 18 17 37 37 H 1.08994 * 109.57991 * 177.58969 * 19 18 17 38 38 H 1.08996 * 109.46451 * 54.82622 * 22 20 19 39 39 H 1.08991 * 109.47162 * 174.82327 * 22 20 19 40 40 H 0.96704 * 113.99986 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.46576 * 294.18437 * 24 16 15 42 42 H 1.09002 * 109.45551 * 54.16183 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4396 2.6527 0.7001 6 1 3.5397 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0549 -1.2311 -0.2641 9 6 1.3443 -2.4113 0.3476 10 6 0.2134 -2.3791 1.1846 11 6 -0.4242 -3.5524 1.5161 12 6 0.0433 -4.7634 1.0284 13 6 1.1562 -4.8070 0.2033 14 6 1.8103 -3.6459 -0.1405 15 6 3.0204 -3.6965 -1.0373 16 7 4.2386 -3.6038 -0.2217 17 6 4.1608 -4.4941 0.9436 18 6 5.3767 -4.2652 1.8443 19 6 6.6548 -4.5451 1.0490 20 6 6.6877 -3.6390 -0.1848 21 1 6.7146 -2.5959 0.1303 22 6 7.9322 -3.9533 -1.0175 23 8 9.1026 -3.6123 -0.2721 24 6 5.4338 -3.8861 -1.0267 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1527 -1.4369 1.5650 27 1 -1.2896 -3.5306 2.1619 28 1 -0.4632 -5.6795 1.2942 29 1 1.5118 -5.7557 -0.1705 30 1 3.0239 -4.6359 -1.5901 31 1 2.9882 -2.8626 -1.7385 32 1 3.2495 -4.2819 1.5026 33 1 4.1475 -5.5312 0.6080 34 1 5.3266 -4.9372 2.7009 35 1 5.3829 -3.2320 2.1913 36 1 6.6671 -5.5888 0.7348 37 1 7.5251 -4.3423 1.6731 38 1 7.9504 -5.0166 -1.2563 39 1 7.9076 -3.3740 -1.9404 40 1 9.9312 -3.7858 -0.7397 41 1 5.4146 -4.9259 -1.3532 42 1 5.4472 -3.2319 -1.8985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235510460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:28 Heat of formation + Delta-G solvation = -59.230131 kcal Electronic energy + Delta-G solvation = -21833.973852 eV Core-core repulsion = 18776.931672 eV Total energy + Delta-G solvation = -3057.042180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53025 -39.16875 -37.48723 -35.45899 -34.74634 -32.37298 -31.68678 -31.15204 -27.54854 -26.76506 -26.29652 -23.81364 -22.80729 -22.64285 -20.95262 -20.56971 -18.96178 -18.20418 -17.22342 -16.76479 -16.35329 -16.09273 -15.83427 -15.65935 -15.23830 -15.02516 -14.61451 -14.33198 -14.28170 -13.89068 -13.47079 -13.34376 -13.17416 -12.92991 -12.79695 -12.72444 -12.56117 -12.32668 -12.07884 -11.94636 -11.60510 -11.32974 -11.27809 -11.23426 -11.01374 -10.92316 -10.76882 -9.22812 -9.19173 -8.93959 -8.55202 -6.20725 1.01729 1.14286 1.39581 1.50266 1.57363 2.24759 2.80437 3.03757 3.56173 3.80472 3.92072 3.95491 4.08087 4.33681 4.35352 4.39649 4.52337 4.55900 4.57848 4.58598 4.63915 4.71909 4.73764 4.84057 4.85761 4.96473 5.11316 5.16038 5.16901 5.23233 5.29407 5.41885 5.43315 5.50983 5.57840 5.81690 6.05049 6.22278 6.26243 6.36464 6.45667 6.49930 6.82212 6.97800 7.08521 7.16023 8.41055 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015092 B = 0.006366 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.809598 B = 4397.559732 C = 5720.753769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.469 4.469 8 H 0.086 0.914 9 C 0.101 3.899 10 C -0.194 4.194 11 C -0.114 4.114 12 C -0.244 4.244 13 C -0.089 4.089 14 C -0.200 4.200 15 C 0.135 3.865 16 N -0.540 5.540 17 C 0.067 3.933 18 C -0.114 4.114 19 C -0.099 4.099 20 C -0.084 4.084 21 H 0.060 0.940 22 C 0.089 3.911 23 O -0.590 6.590 24 C 0.065 3.935 25 H 0.283 0.717 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.396 0.604 41 H 0.040 0.960 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.944 -7.006 -2.119 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.180 4.180 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.099 3.901 10 C -0.213 4.213 11 C -0.133 4.133 12 C -0.263 4.263 13 C -0.107 4.107 14 C -0.202 4.202 15 C 0.008 3.992 16 N -0.265 5.265 17 C -0.061 4.061 18 C -0.152 4.152 19 C -0.136 4.136 20 C -0.103 4.103 21 H 0.078 0.922 22 C 0.011 3.989 23 O -0.399 6.399 24 C -0.062 4.062 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.246 0.754 41 H 0.058 0.942 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.341 -6.196 -1.538 13.895 hybrid contribution -0.031 0.047 -0.609 0.612 sum 12.310 -6.149 -2.147 13.927 Atomic orbital electron populations 1.69898 1.08859 1.30017 1.36885 1.26692 0.95305 1.04242 0.91745 0.85384 0.79192 0.76901 0.79331 1.18798 1.19582 1.18731 1.19861 0.98084 0.91406 1.40563 0.89587 1.17697 0.90957 0.92785 0.88704 1.21321 1.00575 0.96705 1.02712 1.20925 0.99012 0.93354 0.99970 1.20654 1.01569 0.96634 1.07479 1.20667 0.95803 0.96350 0.97901 1.19776 1.01095 0.93260 1.06042 1.20480 0.86814 0.98459 0.93420 1.61833 1.01843 1.53959 1.08830 1.21948 0.98650 0.93206 0.92312 1.21580 0.94231 1.01434 0.97972 1.21462 0.96977 0.98987 0.96210 1.21108 0.92805 1.00388 0.96023 0.92190 1.22072 0.84281 0.99372 0.93214 1.86441 1.17144 1.88944 1.47340 1.21995 0.89251 0.99352 0.95648 0.90613 0.88678 0.87925 0.86980 0.87370 0.95208 0.92195 0.92557 0.95325 0.90614 0.93193 0.91552 0.91436 0.92180 0.92630 0.75388 0.94184 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.31 10.97 21.83 0.24 -44.07 16 2 C 0.03 1.75 5.16 85.26 0.44 2.19 16 3 Si 0.97 39.86 29.59 68.60 2.03 41.89 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.47 -25.15 8.18 23.46 0.19 -24.96 16 8 H 0.09 4.56 6.85 -2.91 -0.02 4.54 16 9 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 10 C -0.19 -10.39 8.69 22.73 0.20 -10.19 16 11 C -0.11 -5.43 10.02 22.22 0.22 -5.20 16 12 C -0.24 -10.65 10.05 22.46 0.23 -10.42 16 13 C -0.09 -3.81 8.62 22.22 0.19 -3.62 16 14 C -0.20 -9.34 3.74 -19.41 -0.07 -9.41 16 15 C 0.13 5.45 4.60 85.56 0.39 5.84 16 16 N -0.54 -19.87 4.54 -900.92 -4.09 -23.96 16 17 C 0.07 2.34 4.81 86.32 0.41 2.76 16 18 C -0.11 -3.46 6.09 30.65 0.19 -3.28 16 19 C -0.10 -2.55 5.16 30.67 0.16 -2.39 16 20 C -0.08 -2.23 2.59 -10.74 -0.03 -2.26 16 21 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 22 C 0.09 1.74 6.43 71.98 0.46 2.21 16 23 O -0.59 -11.79 13.25 -148.98 -1.97 -13.76 16 24 C 0.07 1.88 4.71 86.33 0.41 2.29 16 25 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 26 H 0.10 5.40 6.21 -2.91 -0.02 5.38 16 27 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.11 4.04 8.03 -2.91 -0.02 4.01 16 30 H 0.03 1.09 7.94 -2.39 -0.02 1.07 16 31 H 0.06 2.60 7.34 -2.39 -0.02 2.59 16 32 H 0.06 2.35 6.03 -2.39 -0.01 2.34 16 33 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.40 3.84 9.12 -74.05 -0.68 3.17 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 Total: -1.00 -61.30 331.16 -0.20 -61.50 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.32 Total: 29.58 kcal Atomic # 6 Polarization: -54.44 SS G_CDS: 3.27 Total: -51.17 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: -3.85 Total: -68.03 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.97 Total: -13.76 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -61.30 -0.20 -61.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235510460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.269 kcal (2) G-P(sol) polarization free energy of solvation -61.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds