Wall clock time and date at job start Mon Mar 30 2020 01:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86804 * 119.99798 * 2 1 4 4 H 1.48500 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47045 * 300.00011 * 3 2 1 6 6 H 1.48495 * 109.47098 * 60.00400 * 3 2 1 7 7 C 1.39943 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 163.52305 * 7 2 1 9 9 C 1.41402 * 119.99784 * 343.52202 * 7 2 1 10 10 C 1.40731 * 120.24272 * 334.19021 * 9 7 2 11 11 C 1.37595 * 119.74449 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.24733 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50241 * 359.68666 * 12 11 10 14 14 C 1.37638 * 120.24840 * 0.59268 * 13 12 11 15 15 C 1.50693 * 120.13091 * 179.70209 * 14 13 12 16 16 N 1.46904 * 109.47354 * 259.72797 * 15 14 13 17 17 C 1.44374 * 110.94963 * 48.10992 * 16 15 14 18 18 C 1.54068 * 111.88683 * 219.37752 * 17 16 15 19 19 C 1.54291 * 112.28619 * 318.90675 * 18 17 16 20 20 C 1.50460 * 113.03251 * 318.30492 * 19 18 17 21 21 H 1.09000 * 109.57465 * 332.35241 * 20 19 18 22 22 O 1.42896 * 109.57323 * 211.96779 * 20 19 18 23 23 C 1.54505 * 108.84483 * 92.15907 * 20 19 18 24 24 C 1.45853 * 111.60076 * 282.79753 * 23 20 19 25 25 H 0.96995 * 120.00364 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12609 * 359.96152 * 10 9 7 27 27 H 1.08000 * 119.87432 * 180.02562 * 11 10 9 28 28 H 1.08006 * 119.74909 * 179.97438 * 12 11 10 29 29 H 1.08004 * 119.87651 * 180.29954 * 13 12 11 30 30 H 1.08994 * 109.47568 * 139.72622 * 15 14 13 31 31 H 1.09006 * 109.46888 * 19.72645 * 15 14 13 32 32 H 1.09003 * 109.02976 * 98.75704 * 17 16 15 33 33 H 1.09003 * 108.95893 * 339.94673 * 17 16 15 34 34 H 1.08997 * 108.91742 * 198.18506 * 18 17 16 35 35 H 1.08997 * 108.84763 * 79.58534 * 18 17 16 36 36 H 1.09003 * 108.77162 * 197.38422 * 19 18 17 37 37 H 1.09003 * 108.67800 * 79.16249 * 19 18 17 38 38 H 0.96706 * 114.00235 * 60.64245 * 22 20 19 39 39 H 1.09004 * 109.05220 * 162.24540 * 23 20 19 40 40 H 1.09007 * 109.05353 * 43.34409 * 23 20 19 41 41 H 1.09002 * 108.79977 * 182.20987 * 24 23 20 42 42 H 1.09003 * 108.79087 * 300.55130 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8833 2.3965 -1.2126 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0547 -1.2309 -0.2658 9 6 1.3446 -2.4115 0.3463 10 6 0.2136 -2.3796 1.1832 11 6 -0.4243 -3.5530 1.5137 12 6 0.0434 -4.7637 1.0259 13 6 1.1529 -4.8065 0.1961 14 6 1.8102 -3.6457 -0.1431 15 6 3.0201 -3.6960 -1.0400 16 7 4.2385 -3.6029 -0.2246 17 6 4.1844 -4.5182 0.8906 18 6 4.7708 -3.8968 2.1726 19 6 6.0501 -3.0802 1.8948 20 6 6.9749 -3.7500 0.9150 21 1 6.8374 -4.8302 0.9630 22 8 8.3288 -3.4224 1.2339 23 6 6.6423 -3.2485 -0.5081 24 6 5.4414 -3.8866 -1.0352 25 1 -0.4850 0.8400 0.0004 26 1 -0.1519 -1.4377 1.5647 27 1 -1.2927 -3.5310 2.1555 28 1 -0.4633 -5.6800 1.2908 29 1 1.5057 -5.7547 -0.1821 30 1 2.9876 -2.8620 -1.7411 31 1 3.0237 -4.6354 -1.5928 32 1 4.7498 -5.4162 0.6411 33 1 3.1455 -4.7931 1.0731 34 1 5.0070 -4.6951 2.8762 35 1 4.0235 -3.2416 2.6201 36 1 6.5824 -2.9316 2.8343 37 1 5.7633 -2.1066 1.4973 38 1 8.6056 -3.7086 2.1152 39 1 7.4814 -3.4688 -1.1681 40 1 6.4884 -2.1698 -0.4783 41 1 5.2719 -3.5309 -2.0515 42 1 5.5999 -4.9647 -1.0630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235510815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:49 Heat of formation + Delta-G solvation = -30.937500 kcal Electronic energy + Delta-G solvation = -22286.480060 eV Core-core repulsion = 19230.664740 eV Total energy + Delta-G solvation = -3055.815319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.37136 -37.72361 -36.15582 -33.61615 -32.81850 -32.13269 -29.95173 -29.34334 -26.54268 -25.23526 -24.24128 -23.47149 -20.97406 -20.30962 -19.93895 -18.92212 -17.09498 -17.08997 -15.65541 -15.52285 -15.12654 -14.66351 -14.26557 -13.91713 -13.79594 -13.49860 -13.16852 -13.01391 -12.62199 -12.54703 -12.03506 -11.60570 -11.54808 -11.22274 -11.15601 -11.01721 -10.91079 -10.80777 -10.52949 -10.45111 -10.30014 -10.20481 -10.03016 -9.57517 -9.49637 -9.25350 -9.11547 -7.64715 -7.33687 -7.30568 -6.71620 -4.28979 2.78286 2.94198 3.11769 3.18853 3.25996 3.98599 4.31332 4.48472 4.70253 4.98552 5.23931 5.40321 5.52300 5.56864 5.64001 5.69296 5.78622 5.79738 5.94520 6.09085 6.12637 6.20298 6.24575 6.34312 6.40808 6.46695 6.49200 6.51906 6.64968 6.72463 6.75022 6.88569 7.15107 7.27987 7.40143 7.63680 7.72407 7.75016 7.79164 7.98127 8.09396 8.17109 8.33885 8.71640 8.97081 9.03162 10.22947 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.007417 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.174845 B = 3774.246401 C = 4956.031035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.443 4.443 8 H 0.093 0.907 9 C 0.131 3.869 10 C -0.163 4.163 11 C -0.106 4.106 12 C -0.247 4.247 13 C -0.087 4.087 14 C -0.200 4.200 15 C 0.124 3.876 16 N -0.513 5.513 17 C 0.042 3.958 18 C -0.102 4.102 19 C -0.140 4.140 20 C 0.110 3.890 21 H 0.048 0.952 22 O -0.574 6.574 23 C -0.103 4.103 24 C 0.055 3.945 25 H 0.278 0.722 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.014 0.986 32 H 0.022 0.978 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.372 0.628 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -5.107 1.506 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.472 4.472 8 H 0.111 0.889 9 C 0.128 3.872 10 C -0.182 4.182 11 C -0.124 4.124 12 C -0.266 4.266 13 C -0.106 4.106 14 C -0.202 4.202 15 C -0.001 4.001 16 N -0.237 5.237 17 C -0.086 4.086 18 C -0.141 4.141 19 C -0.178 4.178 20 C 0.052 3.948 21 H 0.065 0.935 22 O -0.379 6.379 23 C -0.141 4.141 24 C -0.073 4.073 25 H 0.089 0.911 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.219 0.781 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.866 -4.187 1.041 9.860 hybrid contribution 0.069 -0.285 0.328 0.440 sum 8.935 -4.472 1.369 10.085 Atomic orbital electron populations 1.69840 1.07623 1.28951 1.35797 1.25972 0.94626 1.01377 0.92407 0.86351 0.81397 0.81230 0.78340 1.18118 1.20243 1.19959 1.19810 0.98308 0.90314 1.38813 0.88865 1.17374 0.90327 0.91530 0.87975 1.21360 0.99212 0.96587 1.01076 1.20673 0.98500 0.93473 0.99778 1.20277 1.01807 0.96132 1.08398 1.20364 0.96197 0.95661 0.98387 1.19417 1.00414 0.93700 1.06677 1.20751 0.86771 0.98477 0.94132 1.61778 1.01408 1.51828 1.08683 1.22100 1.02579 0.92280 0.91672 1.21812 0.96516 0.98810 0.96926 1.21942 0.96031 1.01691 0.98098 1.21567 0.80571 0.97272 0.95423 0.93450 1.86485 1.29181 1.84062 1.38221 1.20491 0.96829 1.02277 0.94492 1.20924 0.91144 0.97739 0.97447 0.91128 0.86618 0.89749 0.89853 0.89965 0.90430 0.96783 0.96030 0.89126 0.93345 0.91241 0.93042 0.90421 0.78096 0.91564 0.90571 0.91177 0.95365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.34 10.97 55.55 0.61 -19.73 16 2 C 0.07 1.81 5.16 -17.35 -0.09 1.72 16 3 Si 0.90 18.77 29.59 -169.99 -5.03 13.74 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.44 -11.23 8.18 -37.74 -0.31 -11.54 16 8 H 0.09 2.34 6.85 -52.49 -0.36 1.98 16 9 C 0.13 3.32 5.56 -106.82 -0.59 2.72 16 10 C -0.16 -4.16 8.68 -38.87 -0.34 -4.49 16 11 C -0.11 -2.46 10.02 -39.66 -0.40 -2.86 16 12 C -0.25 -5.44 10.05 -39.29 -0.39 -5.84 16 13 C -0.09 -1.89 7.88 -39.66 -0.31 -2.20 16 14 C -0.20 -4.54 4.16 -103.92 -0.43 -4.97 16 15 C 0.12 2.47 4.37 -4.98 -0.02 2.44 16 16 N -0.51 -9.19 4.10 -240.92 -0.99 -10.17 16 17 C 0.04 0.73 4.88 -4.62 -0.02 0.70 16 18 C -0.10 -1.62 6.14 -25.50 -0.16 -1.77 16 19 C -0.14 -2.06 5.15 -27.32 -0.14 -2.20 16 20 C 0.11 1.52 3.14 -27.21 -0.09 1.43 16 21 H 0.05 0.64 7.15 -51.93 -0.37 0.27 16 22 O -0.57 -7.52 13.27 -35.23 -0.47 -7.99 16 23 C -0.10 -1.49 5.19 -29.32 -0.15 -1.64 16 24 C 0.06 0.83 4.93 -6.71 -0.03 0.80 16 25 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 26 H 0.12 3.08 6.21 -52.49 -0.33 2.75 16 27 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.08 1.65 8.06 -52.48 -0.42 1.23 16 29 H 0.08 1.60 8.03 -52.48 -0.42 1.17 16 30 H 0.08 1.62 7.34 -51.93 -0.38 1.24 16 31 H 0.01 0.26 7.94 -51.93 -0.41 -0.15 16 32 H 0.02 0.34 6.51 -51.93 -0.34 0.00 16 33 H 0.09 1.74 4.43 -51.93 -0.23 1.51 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 0.67 7.86 -51.93 -0.41 0.26 16 37 H 0.08 1.33 7.38 -51.93 -0.38 0.95 16 38 H 0.37 3.29 8.94 45.56 0.41 3.70 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 1.21 7.59 -51.92 -0.39 0.81 16 41 H 0.07 1.01 7.81 -51.93 -0.41 0.61 16 42 H 0.03 0.40 7.24 -51.93 -0.38 0.03 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -26.96 322.86 -10.14 -37.09 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.65 Total: 9.88 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -3.48 Total: -27.69 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: -0.38 Total: -29.90 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.47 Total: -7.99 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.96 -10.14 -37.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235510815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.155 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds