Wall clock time and date at job start Mon Mar 30 2020 01:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86804 * 119.99798 * 2 1 4 4 H 1.48500 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47045 * 300.00011 * 3 2 1 6 6 H 1.48495 * 109.47098 * 60.00400 * 3 2 1 7 7 C 1.39943 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00299 * 163.52305 * 7 2 1 9 9 C 1.41402 * 119.99784 * 343.52202 * 7 2 1 10 10 C 1.40731 * 120.24272 * 334.19021 * 9 7 2 11 11 C 1.37595 * 119.74449 * 179.97438 * 10 9 7 12 12 C 1.38654 * 120.24733 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50241 * 359.68666 * 12 11 10 14 14 C 1.37638 * 120.24840 * 0.59268 * 13 12 11 15 15 C 1.50693 * 120.13091 * 179.70209 * 14 13 12 16 16 N 1.46904 * 109.47354 * 259.72797 * 15 14 13 17 17 C 1.44374 * 110.94963 * 48.10992 * 16 15 14 18 18 C 1.54068 * 111.88683 * 219.37752 * 17 16 15 19 19 C 1.54291 * 112.28619 * 318.90675 * 18 17 16 20 20 C 1.50460 * 113.03251 * 318.30492 * 19 18 17 21 21 H 1.09000 * 109.57465 * 332.35241 * 20 19 18 22 22 O 1.42896 * 109.57323 * 211.96779 * 20 19 18 23 23 C 1.54505 * 108.84483 * 92.15907 * 20 19 18 24 24 C 1.45853 * 111.60076 * 282.79753 * 23 20 19 25 25 H 0.96995 * 120.00364 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.12609 * 359.96152 * 10 9 7 27 27 H 1.08000 * 119.87432 * 180.02562 * 11 10 9 28 28 H 1.08006 * 119.74909 * 179.97438 * 12 11 10 29 29 H 1.08004 * 119.87651 * 180.29954 * 13 12 11 30 30 H 1.08994 * 109.47568 * 139.72622 * 15 14 13 31 31 H 1.09006 * 109.46888 * 19.72645 * 15 14 13 32 32 H 1.09003 * 109.02976 * 98.75704 * 17 16 15 33 33 H 1.09003 * 108.95893 * 339.94673 * 17 16 15 34 34 H 1.08997 * 108.91742 * 198.18506 * 18 17 16 35 35 H 1.08997 * 108.84763 * 79.58534 * 18 17 16 36 36 H 1.09003 * 108.77162 * 197.38422 * 19 18 17 37 37 H 1.09003 * 108.67800 * 79.16249 * 19 18 17 38 38 H 0.96706 * 114.00235 * 60.64245 * 22 20 19 39 39 H 1.09004 * 109.05220 * 162.24540 * 23 20 19 40 40 H 1.09007 * 109.05353 * 43.34409 * 23 20 19 41 41 H 1.09002 * 108.79977 * 182.20987 * 24 23 20 42 42 H 1.09003 * 108.79087 * 300.55130 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8833 2.3965 -1.2126 6 1 1.8834 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0547 -1.2309 -0.2658 9 6 1.3446 -2.4115 0.3463 10 6 0.2136 -2.3796 1.1832 11 6 -0.4243 -3.5530 1.5137 12 6 0.0434 -4.7637 1.0259 13 6 1.1529 -4.8065 0.1961 14 6 1.8102 -3.6457 -0.1431 15 6 3.0201 -3.6960 -1.0400 16 7 4.2385 -3.6029 -0.2246 17 6 4.1844 -4.5182 0.8906 18 6 4.7708 -3.8968 2.1726 19 6 6.0501 -3.0802 1.8948 20 6 6.9749 -3.7500 0.9150 21 1 6.8374 -4.8302 0.9630 22 8 8.3288 -3.4224 1.2339 23 6 6.6423 -3.2485 -0.5081 24 6 5.4414 -3.8866 -1.0352 25 1 -0.4850 0.8400 0.0004 26 1 -0.1519 -1.4377 1.5647 27 1 -1.2927 -3.5310 2.1555 28 1 -0.4633 -5.6800 1.2908 29 1 1.5057 -5.7547 -0.1821 30 1 2.9876 -2.8620 -1.7411 31 1 3.0237 -4.6354 -1.5928 32 1 4.7498 -5.4162 0.6411 33 1 3.1455 -4.7931 1.0731 34 1 5.0070 -4.6951 2.8762 35 1 4.0235 -3.2416 2.6201 36 1 6.5824 -2.9316 2.8343 37 1 5.7633 -2.1066 1.4973 38 1 8.6056 -3.7086 2.1152 39 1 7.4814 -3.4688 -1.1681 40 1 6.4884 -2.1698 -0.4783 41 1 5.2719 -3.5309 -2.0515 42 1 5.5999 -4.9647 -1.0630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235510815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:48 Heat of formation + Delta-G solvation = -47.140042 kcal Electronic energy + Delta-G solvation = -22287.182655 eV Core-core repulsion = 19230.664740 eV Total energy + Delta-G solvation = -3056.517914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72560 -39.28768 -37.43120 -35.45851 -34.14683 -33.38872 -31.63040 -31.08930 -28.01856 -27.00679 -25.44345 -24.97728 -22.79835 -21.60982 -21.41255 -20.37293 -18.94887 -18.14928 -17.19355 -16.93416 -16.57560 -16.24005 -15.77971 -15.45158 -15.30815 -14.91339 -14.42540 -14.38640 -14.25808 -13.89244 -13.49830 -13.35460 -13.10491 -12.84761 -12.71736 -12.57734 -12.36454 -12.23543 -12.10160 -11.99373 -11.65470 -11.45618 -11.30701 -11.21404 -11.04065 -10.93640 -10.70319 -9.18327 -9.15375 -8.96651 -8.55721 -6.20450 1.00801 1.13557 1.39034 1.52123 1.54236 2.24031 2.80641 3.17122 3.32795 3.84089 3.90315 4.07623 4.16689 4.27782 4.34184 4.38331 4.42832 4.48586 4.52404 4.63110 4.68189 4.77202 4.83491 4.91312 5.00035 5.12098 5.17685 5.23860 5.27077 5.30871 5.32254 5.42153 5.45175 5.50621 5.57862 5.82015 6.05652 6.22902 6.27371 6.40024 6.48514 6.52868 6.82999 6.94560 7.09176 7.16420 8.40873 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.007417 C = 0.005648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.174845 B = 3774.246401 C = 4956.031035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.466 4.466 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.193 4.193 11 C -0.114 4.114 12 C -0.243 4.243 13 C -0.089 4.089 14 C -0.197 4.197 15 C 0.132 3.868 16 N -0.529 5.529 17 C 0.044 3.956 18 C -0.099 4.099 19 C -0.133 4.133 20 C 0.118 3.882 21 H 0.061 0.939 22 O -0.584 6.584 23 C -0.102 4.102 24 C 0.057 3.943 25 H 0.283 0.717 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.392 0.608 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 -6.822 1.496 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.495 4.495 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.213 4.213 11 C -0.132 4.132 12 C -0.263 4.263 13 C -0.108 4.108 14 C -0.199 4.199 15 C 0.006 3.994 16 N -0.253 5.253 17 C -0.085 4.085 18 C -0.137 4.137 19 C -0.171 4.171 20 C 0.060 3.940 21 H 0.079 0.921 22 O -0.392 6.392 23 C -0.140 4.140 24 C -0.070 4.070 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.242 0.758 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.566 -5.916 1.045 12.154 hybrid contribution -0.448 0.105 0.367 0.589 sum 10.117 -5.811 1.412 11.752 Atomic orbital electron populations 1.69899 1.08834 1.29898 1.37140 1.26667 0.95268 1.04180 0.91846 0.85377 0.79762 0.77407 0.78530 1.18364 1.19443 1.19518 1.19883 0.98092 0.91299 1.40265 0.89535 1.17684 0.90847 0.92812 0.88631 1.21318 1.00592 0.96655 1.02698 1.20917 0.98939 0.93386 1.00004 1.20655 1.01638 0.96609 1.07366 1.20687 0.95743 0.96481 0.97865 1.19758 1.01016 0.93181 1.05947 1.20583 0.86747 0.98535 0.93531 1.61684 1.01549 1.52849 1.09194 1.22080 1.01641 0.92972 0.91777 1.21771 0.96118 0.99057 0.96791 1.21875 0.95950 0.99931 0.99321 1.21410 0.80655 0.97629 0.94342 0.92090 1.86449 1.28446 1.84347 1.39977 1.20465 0.97059 1.00892 0.95619 1.20959 0.90018 0.98863 0.97159 0.90676 0.88815 0.88046 0.86960 0.87024 0.92344 0.94956 0.93813 0.91353 0.90742 0.94506 0.91144 0.93628 0.75822 0.90000 0.92731 0.90910 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.12 10.97 21.83 0.24 -43.88 16 2 C 0.03 1.74 5.16 85.26 0.44 2.18 16 3 Si 0.97 39.72 29.59 68.60 2.03 41.75 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.47 -24.55 8.18 23.46 0.19 -24.36 16 8 H 0.09 4.53 6.85 -2.91 -0.02 4.51 16 9 C 0.10 5.38 5.56 -21.29 -0.12 5.26 16 10 C -0.19 -10.20 8.68 22.73 0.20 -10.00 16 11 C -0.11 -5.32 10.02 22.22 0.22 -5.09 16 12 C -0.24 -10.33 10.05 22.46 0.23 -10.10 16 13 C -0.09 -3.71 7.88 22.22 0.17 -3.53 16 14 C -0.20 -8.93 4.16 -19.41 -0.08 -9.01 16 15 C 0.13 5.17 4.37 85.55 0.37 5.55 16 16 N -0.53 -18.46 4.10 -916.14 -3.75 -22.21 16 17 C 0.04 1.43 4.88 87.14 0.42 1.85 16 18 C -0.10 -3.01 6.14 31.39 0.19 -2.82 16 19 C -0.13 -3.73 5.15 30.21 0.16 -3.57 16 20 C 0.12 2.94 3.14 30.28 0.10 3.04 16 21 H 0.06 1.39 7.15 -2.39 -0.02 1.37 16 22 O -0.58 -13.56 13.27 -148.98 -1.98 -15.54 16 23 C -0.10 -2.77 5.19 28.92 0.15 -2.62 16 24 C 0.06 1.61 4.93 83.94 0.41 2.02 16 25 H 0.28 13.73 8.30 -92.71 -0.77 12.96 16 26 H 0.09 5.27 6.21 -2.91 -0.02 5.25 16 27 H 0.10 4.25 8.06 -2.91 -0.02 4.23 16 28 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.11 3.97 8.03 -2.91 -0.02 3.94 16 30 H 0.06 2.49 7.34 -2.39 -0.02 2.47 16 31 H 0.03 1.13 7.94 -2.38 -0.02 1.11 16 32 H 0.04 1.22 6.51 -2.39 -0.02 1.21 16 33 H 0.07 2.53 4.43 -2.39 -0.01 2.52 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.68 7.86 -2.39 -0.02 1.66 16 37 H 0.04 1.57 7.38 -2.39 -0.02 1.55 16 38 H 0.39 5.59 8.94 -74.05 -0.66 4.93 16 39 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.05 1.71 7.59 -2.38 -0.02 1.69 16 41 H 0.07 1.99 7.81 -2.39 -0.02 1.97 16 42 H 0.05 1.15 7.24 -2.39 -0.02 1.14 16 Total: -1.00 -59.33 322.86 -0.05 -59.38 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.35 Total: 31.72 kcal Atomic # 6 Polarization: -54.28 SS G_CDS: 3.06 Total: -51.22 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -3.51 Total: -66.09 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -1.98 Total: -15.54 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -59.33 -0.05 -59.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235510815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.240 kcal (2) G-P(sol) polarization free energy of solvation -59.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds